Rh4DG109400

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018250
Physical Location & Seq
Reverse (-)
16902928 .. 16903245
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG109400.1

Sequence Viewer

Length: 318 bp
ATGAAGATCAATATTGGGTCGCCGAGTTTCGGGGATCAGAGCTTGACGGTGAGTTCAAGAAAGTTGGAGGTGGAGGCTCTGTCTAAGTACATGAGTGATATTCAGACGAGGCATCATTGGAGACGGTTGTCGGCGACGCAGGCGACAGCTTTGACCTCCCTCACCTTCCGCCTCCATATCCCGGCCATCGCCAACCGGTTCAAGTCCATATCGCCTCAGCCGAAGAGTCCGAACCTGATTCTCGCCCACGCCTCTTTAGACAACCCGGAAAGGTGGCCCCATTCTGATAAAGTTGGCCCAAGACACCATCACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

105

Amino Acids

11.87

Weight (kDa)

10.63

Isoelectric Point (pI)

65.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 169
AclWI GGATC 1 cut(s) 42
AcoI YGGCCR 1 cut(s) 183
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 29, 181
AgeI ACCGGT 1 cut(s) 195
AgsI TTSAA 2 cut(s) 57, 202
AluBI AGCT 2 cut(s) 42, 149
AluI AGCT 2 cut(s) 42, 149
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 42
AoxI GGCC 3 cut(s) 183, 275, 295
AsiGI ACCGGT 1 cut(s) 195
AspS9I GGNCC 2 cut(s) 276, 296
AsuC2I CCSGG 2 cut(s) 182, 266
AsuHPI GGTGA 3 cut(s) 61, 154, 302
BbvCI CCTCAGC 1 cut(s) 216
BccI CCATC 2 cut(s) 194, 315
BcnI CCSGG 2 cut(s) 182, 266
BcoDI GTCTC 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 182, 266
BmgT120I GGNCC 2 cut(s) 276, 296
BmiI GGNNCC 1 cut(s) 278
BmrFI CCNGG 2 cut(s) 182, 266
BmsI GCATC 1 cut(s) 121
BoxI GACNNNNGTC 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 216
BpuMI CCSGG 2 cut(s) 182, 266
BsaWI WCCGGW 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 181
Bse118I RCCGGY 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 29, 181
BseMII CTCAG 1 cut(s) 230
BshFI GGCC 3 cut(s) 185, 277, 297
BshTI ACCGGT 1 cut(s) 195
BsiSI CCGG 3 cut(s) 182, 196, 266
BslI CCNNNNNNNGG 2 cut(s) 29, 181
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsnI GGCC 3 cut(s) 185, 277, 297
Bsp143I GATC 2 cut(s) 6, 34
BspACI CCGC 1 cut(s) 169
BspANI GGCC 3 cut(s) 185, 277, 297
BspCNI CTCAG 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 278
BspPI GGATC 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 195
BssMI GATC 2 cut(s) 6, 34
Bst4CI ACNGT 2 cut(s) 49, 126
Bst6I CTCTTC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 84, 216
BstKTI GATC 2 cut(s) 9, 37
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 2 cut(s) 6, 34
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstPAI GACNNNNGTC 1 cut(s) 127
BstSCI CCNGG 2 cut(s) 180, 264
BsuRI GGCC 3 cut(s) 185, 277, 297
BtgZI GCGATG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 195
Cfr13I GGNCC 2 cut(s) 276, 296
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 88
CspAI ACCGGT 1 cut(s) 195
CviAII CATG 1 cut(s) 91
CviJI RGCY 7 cut(s) 42, 77, 149, 185, 220, 277, 297
CviKI_1 RGCY 7 cut(s) 42, 77, 149, 185, 220, 277, 297
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 2 cut(s) 84, 216
DpnI GATC 2 cut(s) 8, 36
DpnII GATC 2 cut(s) 6, 34
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
EciI GGCGGA 1 cut(s) 158
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 1 cut(s) 94
FaiI YATR 3 cut(s) 92, 177, 209
FatI CATG 1 cut(s) 90
HaeIII GGCC 3 cut(s) 185, 277, 297
HapII CCGG 3 cut(s) 182, 196, 266
HgaI GACGC 1 cut(s) 145
Hin1II CATG 1 cut(s) 94
HinfI GANTC 2 cut(s) 226, 238
HpaII CCGG 3 cut(s) 182, 196, 266
HphI GGTGA 3 cut(s) 61, 154, 302
Hpy188I TCNGA 5 cut(s) 39, 105, 231, 286, 317
Hpy188III TCNNGA 1 cut(s) 57
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 2 cut(s) 49, 126
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 2 cut(s) 84, 216
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 2 cut(s) 6, 34
LpnPI CCDG 5 cut(s) 125, 195, 209, 248, 279
LweI GCATC 1 cut(s) 121
MalI GATC 2 cut(s) 8, 36
MboI GATC 2 cut(s) 6, 34
MboII GAAGA 2 cut(s) 16, 235
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 8 cut(s) 61, 67, 102, 166, 170, 182, 225, 262
MspI CCGG 3 cut(s) 182, 196, 266
MspR9I CCNGG 2 cut(s) 182, 266
MwoI GCNNNNNNNGC 1 cut(s) 140
NciI CCSGG 2 cut(s) 182, 266
NdeII GATC 2 cut(s) 6, 34
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 278
NmeAIII GCCGAG 1 cut(s) 48
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PfeI GAWTC 1 cut(s) 238
PinAI ACCGGT 1 cut(s) 195
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
PshAI GACNNNNGTC 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 278
PspPI GGNCC 2 cut(s) 276, 296
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
Sau3AI GATC 2 cut(s) 6, 34
Sau96I GGNCC 2 cut(s) 276, 296
SchI GAGTC 1 cut(s) 235
ScrFI CCNGG 2 cut(s) 182, 266
SetI ASST 8 cut(s) 44, 72, 151, 158, 167, 237, 275, 315
SfaNI GCATC 1 cut(s) 121
SsiI CCGC 1 cut(s) 169
SspI AATATT 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 180, 264
TaaI ACNGT 2 cut(s) 49, 126
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.