Rh1AG295400

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018250
Physical Location & Seq
Forward (+)
52643859 .. 52644338
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG295400.1

Sequence Viewer

Length: 480 bp
ATGGATCAGTCTCACAAACCCAAAAGACCCAAAACTCATCTCGACGATTCAACCTTCATCCGAGGAGGACTATGGCCATCTTCAACAATTCCTTCCATGAAGAACTTCGACTCTCTAGTAGTCCATCTCAAAATTGAGAGAATCAAAGACTGTATTGATGTCGGTTCTGGCACAAAGATCAATATCGGGTTGCCGAGTTTCGGGGTTAAGAGCTCGACGGCGAGTTTGAGAAAGTTGGGGGTGGAGGTTCTGTCCAAGTACATGAGTGATATTCAGACGAGGCATCATTGGAGACAGACGTCAGCGACGGCGGTTACGACCTCCCTCACCTTCCTCCTCCAGATCCCGGTCAAGTCCATATCGCCTCAGCCGGAAAGTCCGAATTTGATTCTCACTGACACCTCGCTCAACAACCCAGAAGGGTGGCCCGCTTCTGATAAAGCTGGCCGGGGACACCATCGCCTCCGGCGAAGGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

159

Amino Acids

17.69

Weight (kDa)

10.19

Isoelectric Point (pI)

64.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 302
AciI CCGC 2 cut(s) 311, 429
AclWI GGATC 2 cut(s) 12, 337
AcoI YGGCCR 2 cut(s) 74, 445
AcsI RAATTY 1 cut(s) 382
AcyI GRCGYC 1 cut(s) 299
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 200, 346
AgsI TTSAA 2 cut(s) 51, 84
AluBI AGCT 2 cut(s) 213, 443
AluI AGCT 2 cut(s) 213, 443
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 15, 286
AlwI GGATC 2 cut(s) 12, 337
AoxI GGCC 4 cut(s) 74, 425, 445, 473
ApoI RAATTY 1 cut(s) 382
ArsI GACNNNNNNTTYG 2 cut(s) 208, 240
Asp700I GAANNNNTTC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 426, 474
AsuC2I CCSGG 2 cut(s) 347, 449
AsuHPI GGTGA 1 cut(s) 319
BalI TGGCCA 1 cut(s) 76
BanII GRGCYC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 215
BbvCI CCTCAGC 1 cut(s) 366
BccI CCATC 3 cut(s) 85, 132, 465
BceAI ACGGC 2 cut(s) 234, 324
BcnI CCSGG 2 cut(s) 347, 449
BcoDI GTCTC 2 cut(s) 15, 286
BfaI CTAG 1 cut(s) 116
Bme1390I CCNGG 2 cut(s) 347, 449
BmgT120I GGNCC 2 cut(s) 426, 474
BmrFI CCNGG 2 cut(s) 347, 449
BmsI GCATC 1 cut(s) 292
BoxI GACNNNNGTC 1 cut(s) 298
BpmI CTGGAG 1 cut(s) 323
Bpu10I CCTNAGC 1 cut(s) 366
BpuMI CCSGG 2 cut(s) 347, 449
BsaBI GATNNNNATC 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 61, 448
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 346
Bse8I GATNNNNATC 1 cut(s) 182
BseDI CCNNGG 2 cut(s) 61, 448
BseGI GGATG 1 cut(s) 57
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 2 cut(s) 200, 346
BseMII CTCAG 1 cut(s) 380
BseRI GAGGAG 2 cut(s) 78, 326
BshFI GGCC 4 cut(s) 76, 427, 447, 475
BsiHKAI GWGCWC 1 cut(s) 215
BsiSI CCGG 4 cut(s) 347, 371, 448, 466
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 2 cut(s) 200, 346
BsmAI GTCTC 2 cut(s) 15, 286
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 4 cut(s) 76, 427, 447, 475
Bsp1286I GDGCHC 1 cut(s) 215
Bsp143I GATC 3 cut(s) 4, 177, 342
BspACI CCGC 2 cut(s) 311, 429
BspANI GGCC 4 cut(s) 76, 427, 447, 475
BspCNI CTCAG 1 cut(s) 379
BspPI GGATC 2 cut(s) 12, 337
BssECI CCNNGG 2 cut(s) 61, 448
BssMI GATC 3 cut(s) 4, 177, 342
BssNI GRCGYC 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 429, 445
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 3 cut(s) 7, 180, 345
BstMAI GTCTC 2 cut(s) 15, 286
BstMBI GATC 3 cut(s) 4, 177, 342
BstPAI GACNNNNGTC 1 cut(s) 298
BstSCI CCNGG 2 cut(s) 345, 447
BstX2I RGATCY 1 cut(s) 342
BstXI CCANNNNNNTGG 1 cut(s) 423
BstYI RGATCY 1 cut(s) 342
BsuRI GGCC 4 cut(s) 76, 427, 447, 475
BtgZI GCGATG 1 cut(s) 443
BtsCI GGATG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 393
Cac8I GCNNGC 2 cut(s) 429, 445
Cfr13I GGNCC 2 cut(s) 426, 474
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 97, 262
CviJI RGCY 7 cut(s) 76, 213, 370, 427, 443, 447, 475
CviKI_1 RGCY 7 cut(s) 76, 213, 370, 427, 443, 447, 475
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 366
DpnI GATC 3 cut(s) 6, 179, 344
DpnII GATC 3 cut(s) 4, 177, 342
EaeI YGGCCR 2 cut(s) 74, 445
Ecl136II GAGCTC 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 474
EcoT38I GRGCYC 1 cut(s) 215
FaeI CATG 2 cut(s) 100, 265
FaiI YATR 4 cut(s) 73, 98, 263, 359
FaqI GGGAC 1 cut(s) 465
FatI CATG 2 cut(s) 96, 261
FauI CCCGC 1 cut(s) 436
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 215
FspBI CTAG 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 4 cut(s) 76, 427, 447, 475
HapII CCGG 4 cut(s) 347, 371, 448, 466
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 2 cut(s) 100, 265
HinfI GANTC 4 cut(s) 47, 110, 141, 388
HpaII CCGG 4 cut(s) 347, 371, 448, 466
HphI GGTGA 1 cut(s) 319
Hpy188I TCNGA 4 cut(s) 62, 276, 381, 436
Hpy188III TCNNGA 2 cut(s) 41, 340
Hpy99I CGWCG 3 cut(s) 47, 220, 310
HpyAV CCTTC 5 cut(s) 64, 102, 340, 413, 465
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 299
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 299
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 2 cut(s) 100, 265
Kzo9I GATC 3 cut(s) 4, 177, 342
LpnPI CCDG 7 cut(s) 153, 353, 360, 384, 429, 429, 461
LweI GCATC 1 cut(s) 292
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 313
MalI GATC 3 cut(s) 6, 179, 344
MboI GATC 3 cut(s) 4, 177, 342
MboII GAAGA 2 cut(s) 72, 112
MflI RGATCY 1 cut(s) 342
MhlI GDGCHC 1 cut(s) 215
MlsI TGGCCA 1 cut(s) 76
MluCI AATT 3 cut(s) 87, 132, 382
MluNI TGGCCA 1 cut(s) 76
MlyI GAGTC 1 cut(s) 104
Mox20I TGGCCA 1 cut(s) 76
MroXI GAANNNNTTC 1 cut(s) 104
MscI TGGCCA 1 cut(s) 76
MseI TTAA 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 76
MspI CCGG 4 cut(s) 347, 371, 448, 466
MspR9I CCNGG 2 cut(s) 347, 449
NciI CCSGG 2 cut(s) 347, 449
NdeII GATC 3 cut(s) 4, 177, 342
NlaIII CATG 2 cut(s) 100, 265
NmeAIII GCCGAG 1 cut(s) 219
PcsI WCGNNNNNNNCGW 2 cut(s) 314, 466
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 3 cut(s) 47, 141, 388
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PshAI GACNNNNGTC 1 cut(s) 298
Psp124BI GAGCTC 1 cut(s) 215
PspPI GGNCC 2 cut(s) 426, 474
PsuI RGATCY 1 cut(s) 342
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SacI GAGCTC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 3 cut(s) 4, 177, 342
Sau96I GGNCC 2 cut(s) 426, 474
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 347, 449
SduI GDGCHC 1 cut(s) 215
SetI ASST 8 cut(s) 56, 215, 249, 302, 323, 332, 404, 445
SfaNI GCATC 1 cut(s) 292
Sse9I AATT 3 cut(s) 87, 132, 382
SsiI CCGC 2 cut(s) 311, 429
SspMI CTAG 1 cut(s) 116
SstI GAGCTC 1 cut(s) 215
StyD4I CCNGG 2 cut(s) 345, 447
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 302
TaqI TCGA 3 cut(s) 42, 108, 215
TasI AATT 3 cut(s) 87, 132, 382
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 3 cut(s) 47, 141, 388
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 46, 113
TspRI CASTG 1 cut(s) 400
XapI RAATTY 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 1 cut(s) 116
ZraI GACGTC 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.