RLG00000034364

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018616
Physical Location & Seq
Reverse (-)
41511812 .. 41516517
4706 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034364

Sequence Viewer

Length: 387 bp
ATGATGATATCAACGTGTCTCCTCGACGAGCTCATTGTCGAGATCTTCCGGCCACTCAACTCTAAGCCCAACCACAACTCTCCAGTTTCGGTGGCTTCGGTTTCGGCTGCCCTCGATTCTCCACCTTACGACGCCGTTTGGATCTTCTCTAGGTCAGGTTCTTCTGGTGAGACTCGGTGCTGTCCCTCTCCACTGCTGAGTCCATCGACGACGGTGGAGCCGCAACAGCGCTGGAGTAGAATGTTTGAAGATCGAGGGCTTGTCCGACGCGCAAAAGCAGAAACTCACTGTGGTGTCGTCTCCAGCCTCTCGGCCTCGTCGTCTCCGTTCTCTAAGGCGCTGAAGGAGTCGCGGGTGGCAGCGGGCCTTGATGGAGCTGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.74

Weight (kDa)

6.09

Isoelectric Point (pI)

70.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018616)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0045481
rosa_laevigata RLG00000034364
rosa_samantha Rh5AG264400 Rh5AG304300 Rh5BG269400 Rh5BG312500 Rh5CG303000 Rh5CG339400 Rh5CG342500
rosa_wichuraiana Rw5G028250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 270, 352
AciI CCGC 3 cut(s) 221, 352, 362
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 362
AcyI GRCGYC 1 cut(s) 132
AfeI AGCGCT 1 cut(s) 230
AflIII ACRYGT 1 cut(s) 14
AgsI TTSAA 1 cut(s) 248
AleI CACNNNNGTG 1 cut(s) 291
AluBI AGCT 2 cut(s) 31, 377
AluI AGCT 2 cut(s) 31, 377
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 4 cut(s) 23, 164, 304, 327
AlwI GGATC 1 cut(s) 149
Aor51HI AGCGCT 1 cut(s) 230
AoxI GGCC 3 cut(s) 50, 312, 364
ApeKI GCWGC 2 cut(s) 107, 359
AspLEI GCGC 3 cut(s) 231, 272, 340
AspS9I GGNCC 1 cut(s) 364
AsuHPI GGTGA 1 cut(s) 179
BanII GRGCYC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 94, 371
BccI CCATC 2 cut(s) 211, 365
BceAI ACGGC 1 cut(s) 119
BcoDI GTCTC 4 cut(s) 23, 164, 304, 327
BfaI CTAG 1 cut(s) 150
BfoI RGCGCY 2 cut(s) 232, 341
BglII AGATCT 1 cut(s) 42
BisI GCNGC 3 cut(s) 108, 221, 360
BlsI GCNGC 3 cut(s) 109, 222, 361
BmgT120I GGNCC 1 cut(s) 364
BmiI GGNNCC 1 cut(s) 219
BpmI CTGGAG 3 cut(s) 66, 253, 286
BsaHI GRCGYC 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 2 cut(s) 94, 371
Bsh1236I CGCG 2 cut(s) 270, 352
BshFI GGCC 3 cut(s) 52, 314, 366
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 168
BsmAI GTCTC 4 cut(s) 23, 164, 304, 327
BsmBI CGTCTC 2 cut(s) 304, 327
BsmFI GGGAC 1 cut(s) 168
BsnI GGCC 3 cut(s) 52, 314, 366
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 3 cut(s) 42, 141, 250
BspACI CCGC 3 cut(s) 221, 352, 362
BspANI GGCC 3 cut(s) 52, 314, 366
BspCNI CTCAG 1 cut(s) 189
BspFNI CGCG 2 cut(s) 270, 352
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 83
BssMI GATC 3 cut(s) 42, 141, 250
BssNI GRCGYC 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 214, 290
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 3 cut(s) 63, 197, 333
BstFNI CGCG 2 cut(s) 270, 352
BstH2I RGCGCY 2 cut(s) 232, 341
BstHHI GCGC 3 cut(s) 231, 272, 340
BstKTI GATC 3 cut(s) 45, 144, 253
BstMAI GTCTC 4 cut(s) 23, 164, 304, 327
BstMBI GATC 3 cut(s) 42, 141, 250
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstUI CGCG 2 cut(s) 270, 352
BstV1I GCAGC 2 cut(s) 94, 371
BstX2I RGATCY 2 cut(s) 42, 141
BstYI RGATCY 2 cut(s) 42, 141
BsuRI GGCC 3 cut(s) 52, 314, 366
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 2 cut(s) 191, 286
Cac8I GCNNGC 1 cut(s) 364
CfoI GCGC 3 cut(s) 231, 272, 340
Cfr13I GGNCC 1 cut(s) 364
CseI GACGC 2 cut(s) 140, 276
DdeI CTNAG 3 cut(s) 63, 197, 333
DpnI GATC 3 cut(s) 44, 143, 252
DpnII GATC 3 cut(s) 42, 141, 250
EaeI YGGCCR 1 cut(s) 50
Ecl136II GAGCTC 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 33
Eco32I GATATC 1 cut(s) 9
Eco47III AGCGCT 1 cut(s) 230
Eco53kI GAGCTC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 362
EcoICRI GAGCTC 1 cut(s) 31
EcoRV GATATC 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 33
Esp3I CGTCTC 2 cut(s) 304, 327
FaqI GGGAC 1 cut(s) 168
FauI CCCGC 2 cut(s) 345, 355
Fnu4HI GCNGC 3 cut(s) 108, 221, 360
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 3 cut(s) 108, 221, 360
FspBI CTAG 1 cut(s) 150
GlaI GCGC 3 cut(s) 230, 271, 339
GluI GCNGC 3 cut(s) 108, 221, 360
GsuI CTGGAG 3 cut(s) 66, 253, 286
HaeII RGCGCY 2 cut(s) 232, 341
HaeIII GGCC 3 cut(s) 52, 314, 366
HapII CCGG 1 cut(s) 49
HgaI GACGC 2 cut(s) 140, 276
HhaI GCGC 3 cut(s) 231, 272, 340
Hin1I GRCGYC 1 cut(s) 132
Hin6I GCGC 3 cut(s) 229, 270, 338
HinP1I GCGC 3 cut(s) 229, 270, 338
HinfI GANTC 4 cut(s) 116, 172, 199, 347
HpaII CCGG 1 cut(s) 49
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 266
Hpy188III TCNNGA 1 cut(s) 40
Hpy99I CGWCG 6 cut(s) 29, 134, 211, 214, 270, 322
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 2 cut(s) 214, 290
HpyCH4IV ACGT 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpyF3I CTNAG 3 cut(s) 63, 197, 333
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 1 cut(s) 132
HspAI GCGC 3 cut(s) 229, 270, 338
Kzo9I GATC 3 cut(s) 42, 141, 250
LmnI GCTCC 2 cut(s) 217, 374
LpnPI CCDG 6 cut(s) 62, 96, 141, 150, 217, 316
Lsp1109I GCAGC 2 cut(s) 94, 371
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 14
MalI GATC 3 cut(s) 44, 143, 252
MboI GATC 3 cut(s) 42, 141, 250
MboII GAAGA 4 cut(s) 37, 136, 153, 260
MflI RGATCY 2 cut(s) 42, 141
MhlI GDGCHC 1 cut(s) 33
MlyI GAGTC 3 cut(s) 166, 208, 356
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 6 cut(s) 32, 122, 196, 248, 317, 325
MslI CAYNNNNRTG 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 1 cut(s) 49
MvnI CGCG 2 cut(s) 270, 352
MwoI GCNNNNNNNGC 1 cut(s) 226
NdeII GATC 3 cut(s) 42, 141, 250
NlaIV GGNNCC 1 cut(s) 219
NmeAIII GCCGAG 1 cut(s) 290
OliI CACNNNNGTG 1 cut(s) 291
PcsI WCGNNNNNNNCGW 2 cut(s) 317, 323
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 3 cut(s) 109, 222, 361
PleI GAGTC 3 cut(s) 166, 207, 355
PpsI GAGTC 3 cut(s) 166, 207, 355
Psp124BI GAGCTC 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 364
PsuI RGATCY 2 cut(s) 42, 141
RseI CAYNNNNRTG 1 cut(s) 291
SacI GAGCTC 1 cut(s) 33
SatI GCNGC 3 cut(s) 108, 221, 360
Sau3AI GATC 3 cut(s) 42, 141, 250
Sau96I GGNCC 1 cut(s) 364
SchI GAGTC 3 cut(s) 166, 208, 356
SduI GDGCHC 1 cut(s) 33
SetI ASST 6 cut(s) 17, 33, 127, 155, 160, 379
SmiMI CAYNNNNRTG 1 cut(s) 291
SsiI CCGC 3 cut(s) 221, 352, 362
SspMI CTAG 1 cut(s) 150
SstI GAGCTC 1 cut(s) 33
TaaI ACNGT 2 cut(s) 214, 290
TaiI ACGT 1 cut(s) 17
TaqI TCGA 5 cut(s) 24, 39, 114, 206, 253
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 1 cut(s) 116
TscAI CASTG 2 cut(s) 198, 293
TseI GCWGC 2 cut(s) 107, 359
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 2 cut(s) 198, 293
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.