Rh5AG304300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018616
Physical Location & Seq
Reverse (-)
43384679 .. 43385002
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG304300.1

Sequence Viewer

Length: 324 bp
ATGATCATATCAACGTGTCTCCTAGACGAGCTCATCGTCAAGATGTTCCGGCCACTCAACTCCAAGCCCAACCACAACTCTCCAGTTTCGGTGGCTTTGGTTTCGGCTGCCGTGGTTCTTCTCGCGGAGCTCGGTTCTCCACCTTACGACGCCGTTTGGATCTTCTCTAGGTCAGGTTCTTCTGGTGCGACTCGGTGTTGTCCCTCTCCACCACCGAGTCCATCGACGACGGTGGAGCCGCAACAGCACTGGAGTAGAATGTTTGAAGATCGAGGGCTTGGTAATCGAGAAGCTTCTGAGCTTTCGATTATCTCAGTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.55

Weight (kDa)

6.05

Isoelectric Point (pI)

65.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018616)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0045481
rosa_laevigata RLG00000034364
rosa_samantha Rh5AG264400 Rh5AG304300 Rh5BG269400 Rh5BG312500 Rh5CG303000 Rh5CG339400 Rh5CG342500
rosa_wichuraiana Rw5G028250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 125
AciI CCGC 2 cut(s) 125, 239
AclWI GGATC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 150
AflIII ACRYGT 1 cut(s) 14
AgsI TTSAA 1 cut(s) 266
AluBI AGCT 4 cut(s) 31, 130, 293, 301
AluI AGCT 4 cut(s) 31, 130, 293, 301
Alw21I GWGCWC 2 cut(s) 33, 132
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 1 cut(s) 167
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 33, 132
Bbv12I GWGCWC 2 cut(s) 33, 132
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 229
BceAI ACGGC 2 cut(s) 95, 137
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 2 cut(s) 23, 168
BisI GCNGC 2 cut(s) 108, 239
BlsI GCNGC 2 cut(s) 109, 240
BmiI GGNNCC 1 cut(s) 237
BpmI CTGGAG 2 cut(s) 66, 271
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 111
Bse1I ACTGG 2 cut(s) 83, 254
BseDI CCNNGG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 2 cut(s) 83, 254
BseXI GCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 52
BsiHKAI GWGCWC 2 cut(s) 33, 132
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 1 cut(s) 52
Bsp1286I GDGCHC 2 cut(s) 33, 132
Bsp143I GATC 3 cut(s) 3, 159, 268
BspACI CCGC 2 cut(s) 125, 239
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 289
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 1 cut(s) 167
BsrI ACTGG 2 cut(s) 83, 254
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 3 cut(s) 3, 159, 268
BssNI GRCGYC 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 232
BstACI GRCGYC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 297, 313
BstDSI CCRYGG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 3 cut(s) 6, 162, 271
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 3 cut(s) 3, 159, 268
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
BsuRI GGCC 1 cut(s) 52
BtgI CCRYGG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 247
CseI GACGC 1 cut(s) 158
DdeI CTNAG 2 cut(s) 297, 313
DpnI GATC 3 cut(s) 5, 161, 270
DpnII GATC 3 cut(s) 3, 159, 268
EaeI YGGCCR 1 cut(s) 50
Ecl136II GAGCTC 2 cut(s) 31, 130
Eco24I GRGCYC 2 cut(s) 33, 132
Eco53kI GAGCTC 2 cut(s) 31, 130
EcoICRI GAGCTC 2 cut(s) 31, 130
EcoT38I GRGCYC 2 cut(s) 33, 132
FaiI YATR 1 cut(s) 8
FaqI GGGAC 1 cut(s) 186
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 108, 239
FriOI GRGCYC 2 cut(s) 33, 132
Fsp4HI GCNGC 2 cut(s) 108, 239
FspBI CTAG 2 cut(s) 23, 168
GluI GCNGC 2 cut(s) 108, 239
GsuI CTGGAG 2 cut(s) 66, 271
HaeIII GGCC 1 cut(s) 52
HapII CCGG 1 cut(s) 49
HgaI GACGC 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 2 cut(s) 190, 217
HpaII CCGG 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 2 cut(s) 40, 287
Hpy99I CGWCG 3 cut(s) 152, 229, 232
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpyF3I CTNAG 2 cut(s) 297, 313
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 159, 268
LmnI GCTCC 2 cut(s) 127, 235
LpnPI CCDG 5 cut(s) 62, 96, 159, 168, 235
Lsp1109I GCAGC 1 cut(s) 94
MaeI CTAG 2 cut(s) 23, 168
MaeII ACGT 1 cut(s) 14
MalI GATC 3 cut(s) 5, 161, 270
MboI GATC 3 cut(s) 3, 159, 268
MboII GAAGA 4 cut(s) 110, 154, 171, 278
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 2 cut(s) 33, 132
MlyI GAGTC 2 cut(s) 184, 226
MnlI CCTC 2 cut(s) 214, 266
MspI CCGG 1 cut(s) 49
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 244
NdeII GATC 3 cut(s) 3, 159, 268
NlaIV GGNNCC 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PkrI GCNGC 2 cut(s) 109, 240
PleI GAGTC 2 cut(s) 184, 225
PpsI GAGTC 2 cut(s) 184, 225
Psp124BI GAGCTC 2 cut(s) 33, 132
PspN4I GGNNCC 1 cut(s) 237
PsuI RGATCY 1 cut(s) 159
SacI GAGCTC 2 cut(s) 33, 132
SatI GCNGC 2 cut(s) 108, 239
Sau3AI GATC 3 cut(s) 3, 159, 268
SchI GAGTC 2 cut(s) 184, 226
SduI GDGCHC 2 cut(s) 33, 132
SetI ASST 8 cut(s) 17, 33, 132, 145, 173, 178, 295, 303
SsiI CCGC 2 cut(s) 125, 239
SspMI CTAG 2 cut(s) 23, 168
SstI GAGCTC 2 cut(s) 33, 132
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 1 cut(s) 17
TaqI TCGA 4 cut(s) 224, 271, 286, 305
TauI GCSGC 1 cut(s) 241
TscAI CASTG 1 cut(s) 254
TseI GCWGC 1 cut(s) 107
TspRI CASTG 1 cut(s) 254
XspI CTAG 2 cut(s) 23, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.