Rh5CG303000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018616
Physical Location & Seq
Reverse (-)
33341609 .. 33341887
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG303000.1

Sequence Viewer

Length: 279 bp
ATGAGTATCGGACTTGACTCCAAGCCCGGTCACGACTTTCCAGTTTCGGCGGTTTTGTTTTCGGCAGCCGTGGGCGGTTCTTCTCGTGGAGCTCGGTTCTCCACCTTACCACGCCGTTTTAAATCTTCTGGTGAGACTCGGTGCTGTCGCTCTCCACCGTCGAGTCTATTGACGACCGCAAGATCTACTTGGAGCAGGCGAAACTCCGGCGATGCAAGATCTACTAGGAGCTGGCGAAAGAGGCGAGGACAAACCAATCCGATCGATGACATGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.09

Weight (kDa)

11.61

Isoelectric Point (pI)

74.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018616)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0045481
rosa_laevigata RLG00000034364
rosa_samantha Rh5AG264400 Rh5AG304300 Rh5BG269400 Rh5BG312500 Rh5CG303000 Rh5CG339400 Rh5CG342500
rosa_wichuraiana Rw5G028250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 50, 75, 177
AluBI AGCT 2 cut(s) 92, 231
AluI AGCT 2 cut(s) 92, 231
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 65
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 143
BanII GRGCYC 1 cut(s) 94
BauI CACGAG 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 77
BceAI ACGGC 2 cut(s) 53, 99
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 225
BglII AGATCT 2 cut(s) 182, 218
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 77
Bsh1285I CGRYCG 2 cut(s) 177, 264
BshVI ATCGAT 1 cut(s) 264
BsiEI CGRYCG 2 cut(s) 177, 264
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 2 cut(s) 27, 207
BsmAI GTCTC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 3 cut(s) 182, 218, 261
BspACI CCGC 3 cut(s) 50, 75, 177
BspDI ATCGAT 1 cut(s) 264
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 3 cut(s) 182, 218, 261
BssSI CACGAG 1 cut(s) 84
Bst2BI CACGAG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 197, 233
BstDSI CCRYGG 1 cut(s) 69
BstKTI GATC 3 cut(s) 185, 221, 264
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 3 cut(s) 182, 218, 261
BstMCI CGRYCG 2 cut(s) 177, 264
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 77
BstX2I RGATCY 2 cut(s) 182, 218
BstYI RGATCY 2 cut(s) 182, 218
Bsu15I ATCGAT 1 cut(s) 264
BsuTUI ATCGAT 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 197, 233
ClaI ATCGAT 1 cut(s) 264
CviAII CATG 1 cut(s) 271
CviJI RGCY 4 cut(s) 25, 68, 92, 231
CviKI_1 RGCY 4 cut(s) 25, 68, 92, 231
DpnI GATC 3 cut(s) 184, 220, 263
DpnII GATC 3 cut(s) 182, 218, 261
DraI TTTAAA 1 cut(s) 121
Ecl136II GAGCTC 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 94
FaeI CATG 1 cut(s) 274
FaiI YATR 1 cut(s) 272
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FatI CATG 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 66
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 225
GluI GCNGC 1 cut(s) 66
HapII CCGG 2 cut(s) 27, 207
Hin1II CATG 1 cut(s) 274
HinfI GANTC 3 cut(s) 17, 136, 163
HpaII CCGG 2 cut(s) 27, 207
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 2 cut(s) 11, 261
Hpy188III TCNNGA 1 cut(s) 32
Hpy99I CGWCG 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
Hsp92II CATG 1 cut(s) 274
Kzo9I GATC 3 cut(s) 182, 218, 261
LmnI GCTCC 3 cut(s) 89, 192, 228
LpnPI CCDG 6 cut(s) 40, 54, 114, 181, 217, 220
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 202
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 29
MalI GATC 3 cut(s) 184, 220, 263
MboI GATC 3 cut(s) 182, 218, 261
MboII GAAGA 2 cut(s) 72, 117
MflI RGATCY 2 cut(s) 182, 218
MhlI GDGCHC 1 cut(s) 94
MlyI GAGTC 3 cut(s) 11, 130, 172
MnlI CCTC 2 cut(s) 234, 239
MseI TTAA 1 cut(s) 120
MspI CCGG 2 cut(s) 27, 207
MspR9I CCNGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 241
NciI CCSGG 1 cut(s) 27
NdeII GATC 3 cut(s) 182, 218, 261
NlaIII CATG 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 67
Ple19I CGATCG 1 cut(s) 264
PleI GAGTC 3 cut(s) 11, 130, 171
PpsI GAGTC 3 cut(s) 11, 130, 171
Psp124BI GAGCTC 1 cut(s) 94
PsuI RGATCY 2 cut(s) 182, 218
PvuI CGATCG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 3 cut(s) 182, 218, 261
SchI GAGTC 3 cut(s) 11, 130, 172
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 94
SetI ASST 3 cut(s) 94, 107, 233
SfaNI GCATC 1 cut(s) 202
SsiI CCGC 3 cut(s) 50, 75, 177
SspMI CTAG 1 cut(s) 225
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 2 cut(s) 161, 264
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 29
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.