Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0018616

Physical Location & Seq

Genomic Coordinates Reverse (-)

38901012 .. 38904426

Gene Structure 3415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG339400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCTAGCCCACAAGCACACAATTCTGTACCGCCTGGAATTCAAATGATGGCTACTGGAAATGGAGATCCAATAGCAACAGCACATTACGTCATCAACATTCGCTCAACACCTTCGGATCTTTTTCTAGAGAACGACAATAGGAGAAAAGAGAAGAGAGGAGATGAGGCAGACGCCATGATCATATCAACGTGTCTCCTCGACGAGCTCATTGTCGAGATCTTCCGGCCACTCAACTCCAAGCCCAACCACAACTCTCTAGTTTCGGTGGCTTTGGTTTCGGCTGCCGTGGGTGGTTCTTCTCACGGAGCTCGGTTCTCCACCTTACGACGCCGTTTGGATCTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

116

Amino Acids

12.59

Weight (kDa)

6.9

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0045481
rosa_laevigata	RLG00000034364
rosa_samantha	Rh5AG264400 Rh5AG304300 Rh5BG269400 Rh5BG312500 Rh5CG303000 Rh5CG339400 Rh5CG342500
rosa_wichuraiana	Rw5G028250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	3 cut(s)	62, 126, 348
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	39
AcyI	GRCGYC	2 cut(s)	174, 331
AfaI	GTAC	1 cut(s)	30
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	208, 311
AluI	AGCT	2 cut(s)	208, 311
Alw21I	GWGCWC	2 cut(s)	210, 313
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	3 cut(s)	62, 126, 348
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	39
BanII	GRGCYC	2 cut(s)	210, 313
Bbv12I	GWGCWC	2 cut(s)	210, 313
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	2 cut(s)	272, 318
BciT130I	CCWGG	1 cut(s)	36
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	4 cut(s)	6, 128, 260, 349
BglII	AGATCT	1 cut(s)	219
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	36
BsaHI	GRCGYC	2 cut(s)	174, 331
BsaJI	CCNNGG	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	2 cut(s)	174, 188
BseXI	GCAGC	1 cut(s)	271
BshFI	GGCC	1 cut(s)	229
BsiHKAI	GWGCWC	2 cut(s)	210, 313
BsiSI	CCGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	229
Bsp1286I	GDGCHC	2 cut(s)	210, 313
Bsp143I	GATC	5 cut(s)	67, 118, 180, 219, 340
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	229
BspPI	GGATC	3 cut(s)	62, 126, 348
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	5 cut(s)	67, 118, 180, 219, 340
BssNI	GRCGYC	2 cut(s)	174, 331
Bst2UI	CCWGG	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	2 cut(s)	174, 331
BstDSI	CCRYGG	1 cut(s)	288
BstKTI	GATC	5 cut(s)	70, 121, 183, 222, 343
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	5 cut(s)	67, 118, 180, 219, 340
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	271
BstX2I	RGATCY	4 cut(s)	67, 118, 219, 340
BstYI	RGATCY	4 cut(s)	67, 118, 219, 340
BsuRI	GGCC	1 cut(s)	229
BtgI	CCRYGG	1 cut(s)	288
CseI	GACGC	2 cut(s)	182, 339
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	8 cut(s)	9, 53, 208, 229, 244, 272, 284, 311
CviKI_1	RGCY	8 cut(s)	9, 53, 208, 229, 244, 272, 284, 311
CviQI	GTAC	1 cut(s)	29
DpnI	GATC	5 cut(s)	69, 120, 182, 221, 342
DpnII	GATC	5 cut(s)	67, 118, 180, 219, 340
EaeI	YGGCCR	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Ecl136II	GAGCTC	2 cut(s)	208, 311
Eco24I	GRGCYC	2 cut(s)	210, 313
Eco53kI	GAGCTC	2 cut(s)	208, 311
EcoICRI	GAGCTC	2 cut(s)	208, 311
EcoRI	GAATTC	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	34
EcoT38I	GRGCYC	2 cut(s)	210, 313
FaeI	CATG	1 cut(s)	181
FaiI	YATR	2 cut(s)	179, 185
FatI	CATG	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	285
FriOI	GRGCYC	2 cut(s)	210, 313
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	4 cut(s)	6, 128, 260, 349
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	1 cut(s)	226
HgaI	GACGC	2 cut(s)	182, 339
Hin1I	GRCGYC	2 cut(s)	174, 331
Hin1II	CATG	1 cut(s)	181
HpaII	CCGG	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	2 cut(s)	128, 217
Hpy99I	CGWCG	2 cut(s)	206, 333
HpyAV	CCTTC	1 cut(s)	123
HpyCH4IV	ACGT	2 cut(s)	90, 191
HpySE526I	ACGT	2 cut(s)	90, 191
Hsp92I	GRCGYC	2 cut(s)	174, 331
Hsp92II	CATG	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	5 cut(s)	67, 118, 180, 219, 340
LmnI	GCTCC	1 cut(s)	308
LpnPI	CCDG	4 cut(s)	21, 42, 48, 239
Lsp1109I	GCAGC	1 cut(s)	271
MaeI	CTAG	4 cut(s)	6, 128, 260, 349
MaeII	ACGT	2 cut(s)	90, 191
MalI	GATC	5 cut(s)	69, 120, 182, 221, 342
MboI	GATC	5 cut(s)	67, 118, 180, 219, 340
MboII	GAAGA	4 cut(s)	166, 214, 291, 335
MflI	RGATCY	4 cut(s)	67, 118, 219, 340
MhlI	GDGCHC	2 cut(s)	210, 313
MluCI	AATT	2 cut(s)	22, 39
MnlI	CCTC	3 cut(s)	152, 160, 209
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
NdeII	GATC	5 cut(s)	67, 118, 180, 219, 340
NlaIII	CATG	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	286
Psp124BI	GAGCTC	2 cut(s)	210, 313
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PsuI	RGATCY	4 cut(s)	67, 118, 219, 340
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SacI	GAGCTC	2 cut(s)	210, 313
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	5 cut(s)	67, 118, 180, 219, 340
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	2 cut(s)	210, 313
SetI	ASST	6 cut(s)	93, 115, 194, 210, 313, 326
Sse9I	AATT	2 cut(s)	22, 39
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	4 cut(s)	6, 128, 260, 349
SstI	GAGCTC	2 cut(s)	210, 313
StyD4I	CCNGG	1 cut(s)	34
TaiI	ACGT	2 cut(s)	93, 194
TaqI	TCGA	2 cut(s)	201, 216
TasI	AATT	2 cut(s)	22, 39
TseI	GCWGC	1 cut(s)	284
TspGWI	ACGGA	1 cut(s)	321
XapI	RAATTY	1 cut(s)	39
XbaI	TCTAGA	1 cut(s)	127
XspI	CTAG	4 cut(s)	6, 128, 260, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.