Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004420

Physical Location & Seq

Genomic Coordinates Forward (+)

48386728 .. 48392156

Gene Structure 5429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034683

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGAGTCAACCCAAAATCAAGCGTAGAGTGGGTAAATATGAGGTGGGAAGGACAATTGGTGAGGGAACGTTTGCAAAAGTGAAGTTTGCTAGAAATTCTGAGACTGGGGAACCTGTGGCTCTTAAGATTCTTGACAAAGAGAAGGTTCTCAAACACAAGATGGCTGAACAGATTAAACGGGAAATAGCAACAATGAAGCTGATTAAGCATCCAAATGTTGTTCAGTTGTATGAGGTCATGGGGAGCAAGACAAAGATATTTATAGTTATGGAGTTTGTTACTGGGGGAGAGCTCTTTGACAAAATTGTAAACAATGGTCGGATGAGAGAGGATGAAGCACGTAGATATTTCCAACAGCTTATTAATGCAGTTGATTACTGCCATAGCAGAGGAGTATATCACAGAGACCTGAAGCCAGAAAATTTGCTATTGGATGCCTATGGGAACCTTAAAGTTTCTGATTTTGGATTGAGTGCGCTGTCTCAACAAGTCAGGGATGATGGCTTACTTCACACTACCTGTGGAACTCCAAATTACGTTGCTCCTGAGGTCCTTAATGATAGAGGCTATGATGGAGCAACTGCAGACTTGTGGTCATGTGGAGTGATACTGTTTGTATTGCTTGCAGGTTACTTGCCGTTTGATGATTCTAATCTTATAAACCTCTATAAAAAAATCTCAGCAGGTGAATTTACTTGTCCCCCTTGGCTGTCGTTTGGTGCCATGAAACTAATAGCTCGAATTCTGGATCCCAACCCTATGACACGTGTCACTATTGCTGAAATTCTGGAAGACGAATGGTTCAAGAAAGATTACAAGTCACTTATGTTTGAGGAGAAAGAAGATACAAACTTGGATGATGTAGAAGCTGTTTTTAAGGATTCAGAAGAGCACCATGTAACAGAAAAGAAGGAAGAACAACCAGCTGCTATGAATGCTTTTGAGTTAATTTCAATGTCGAAGGGGCTGAACCTTGGGAATTTGTTTGATGTAGAACAGGGTTTTAAGAGAGAAACAAGGTTCACATCTAGATGCCCTGCTAACGAGATAATTCATAAAATTGAAGAAGCTGCAAAGCCCCTTGGTTTTGACGTACAGAAGAAAAATTACAAGTTGAGGCTGGAAAACATGAAAGCTGGGAGAAAGGGAAACCTTAATGTTGCCACAGAGATATTTCAAGTTGCACCTTCTCTTCATATGGTTGAGGTGAGAAAAGCCAAAGGGGACACATTGGAGTTCCACAAGTTCTATAAGAACCTCTCAGCCTGCTTGGATGATGTTGTTTGGAAGACTGAGGAGGACATGCTAGAAATGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

440

Amino Acids

50.14

Weight (kDa)

6.41

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	13 - 268	1.3e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	15 - 264	3.2e-37	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	108 - 216	7.8e-06	Kinase-like
NAM-associated	PF14303	272 - 419	1.7e-06	No apical meristem-associated C-terminal domain
NAF	PF03822	308 - 367	1.1e-23	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26980 AT2G26980 AT2G26980 AT2G26980 AT5G21326
fragaria_vesca	FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610
malus_domestica	MD03G1163600.v1.1
prunus_persica	Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050061
rosa_laevigata	RLG00000034683
rosa_multiflora	Rmu_sc0000333.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031070
rosa_rugosa	Rorug05G0257000 Rorug05G0257100 Rorug05G0257200.1 Rorug05G0257300 Rorug05G0257400
rosa_samantha	Rh5AG330200 Rh5BG340900 Rh5CG367500 Rh5DG353700
rosa_wichuraiana	Rw5G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	659
AarI	CACCTGC	1 cut(s)	674
Acc36I	ACCTGC	2 cut(s)	617, 674
AccB1I	GGYRCC	1 cut(s)	719
AclI	AACGTT	1 cut(s)	68
AclWI	GGATC	2 cut(s)	743, 756
AcsI	RAATTY	6 cut(s)	94, 421, 689, 741, 783, 979
AcuI	CTGAAG	1 cut(s)	431
AcvI	CACGTG	1 cut(s)	767
AfaI	GTAC	1 cut(s)	1095
AflII	CTTAAG	1 cut(s)	122
AflIII	ACRYGT	2 cut(s)	764, 766
AgsI	TTSAA	4 cut(s)	805, 954, 1064, 1178
AhdI	GACNNNNNGTC	1 cut(s)	592
AluBI	AGCT	8 cut(s)	199, 292, 358, 737, 869, 926, 1070, 1136
AluI	AGCT	8 cut(s)	199, 292, 358, 737, 869, 926, 1070, 1136
Alw21I	GWGCWC	2 cut(s)	294, 894
Alw26I	GTCTC	3 cut(s)	95, 399, 486
AlwI	GGATC	2 cut(s)	743, 756
ApeKI	GCWGC	2 cut(s)	926, 1070
ApoI	RAATTY	6 cut(s)	94, 421, 689, 741, 783, 979
AseI	ATTAAT	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	550
AsuHPI	GGTGA	3 cut(s)	71, 698, 1219
AvaII	GGWCC	1 cut(s)	550
AxyI	CCTNAGG	1 cut(s)	546
BamHI	GGATCC	1 cut(s)	748
BanI	GGYRCC	1 cut(s)	719
BanII	GRGCYC	1 cut(s)	294
BarI	GAAGNNNNNNTAC	2 cut(s)	1091, 1123
BbrPI	CACGTG	1 cut(s)	767
BbsI	GAAGAC	2 cut(s)	798, 1295
Bbv12I	GWGCWC	2 cut(s)	294, 894
BbvI	GCAGC	2 cut(s)	913, 1057
BccI	CCATC	3 cut(s)	154, 494, 566
BceAI	ACGGC	1 cut(s)	622
BcoDI	GTCTC	3 cut(s)	95, 399, 486
BfaI	CTAG	3 cut(s)	90, 1029, 1307
BfmI	CTRYAG	1 cut(s)	582
BfrI	CTTAAG	1 cut(s)	122
BfuAI	ACCTGC	2 cut(s)	617, 674
BisI	GCNGC	2 cut(s)	927, 1071
BlsI	GCNGC	2 cut(s)	928, 1072
Bme18I	GGWCC	1 cut(s)	550
BmeRI	GACNNNNNGTC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	4 cut(s)	111, 446, 721, 750
BmrI	ACTGGG	2 cut(s)	114, 291
BmsI	GCATC	3 cut(s)	217, 424, 1022
BmuI	ACTGGG	2 cut(s)	114, 291
BoxI	GACNNNNGTC	1 cut(s)	767
BpiI	GAAGAC	2 cut(s)	798, 1295
BsaAI	YACGTR	2 cut(s)	341, 767
BsaBI	GATNNNNATC	1 cut(s)	651
BsaI	GGTCTC	1 cut(s)	399
BsaJI	CCNNGG	3 cut(s)	704, 973, 1081
Bse1I	ACTGG	2 cut(s)	109, 286
Bse21I	CCTNAGG	1 cut(s)	546
Bse8I	GATNNNNATC	1 cut(s)	651
BseDI	CCNNGG	3 cut(s)	704, 973, 1081
BseGI	GGATG	7 cut(s)	208, 327, 337, 439, 502, 862, 1279
BseJI	GATNNNNATC	1 cut(s)	651
BseMII	CTCAG	5 cut(s)	90, 537, 693, 1275, 1284
BseNI	ACTGG	2 cut(s)	109, 286
BseRI	GAGGAG	3 cut(s)	405, 848, 1310
BseXI	GCAGC	2 cut(s)	913, 1057
BseYI	CCCAGC	1 cut(s)	1136
BshNI	GGYRCC	1 cut(s)	719
BsiHKAI	GWGCWC	2 cut(s)	294, 894
BslFI	GGGAC	2 cut(s)	684, 1238
BsmAI	GTCTC	3 cut(s)	95, 399, 486
BsmFI	GGGAC	2 cut(s)	684, 1238
BsmI	GAATGC	1 cut(s)	940
Bso31I	GGTCTC	1 cut(s)	399
Bsp1286I	GDGCHC	2 cut(s)	294, 894
Bsp143I	GATC	1 cut(s)	748
BspCNI	CTCAG	5 cut(s)	91, 538, 692, 1274, 1285
BspLI	GGNNCC	4 cut(s)	111, 446, 721, 750
BspMAI	CTGCAG	1 cut(s)	586
BspMI	ACCTGC	2 cut(s)	617, 674
BspPI	GGATC	2 cut(s)	743, 756
BspQI	GCTCTTC	1 cut(s)	882
BspT107I	GGYRCC	1 cut(s)	719
BspTI	CTTAAG	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	109, 286
BssECI	CCNNGG	3 cut(s)	704, 973, 1081
BssMI	GATC	1 cut(s)	748
BssT1I	CCWWGG	3 cut(s)	704, 973, 1081
Bst4CI	ACNGT	1 cut(s)	612
Bst6I	CTCTTC	2 cut(s)	882, 1197
BstAFI	CTTAAG	1 cut(s)	122
BstBAI	YACGTR	2 cut(s)	341, 767
BstC8I	GCNNGC	2 cut(s)	624, 1267
BstDEI	CTNAG	5 cut(s)	99, 546, 679, 1261, 1293
BstF5I	GGATG	7 cut(s)	208, 327, 337, 439, 502, 862, 1279
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	1 cut(s)	751
BstMAI	GTCTC	3 cut(s)	95, 399, 486
BstMBI	GATC	1 cut(s)	748
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 935
BstNSI	RCATGY	1 cut(s)	1306
BstPAI	GACNNNNGTC	1 cut(s)	767
BstSFI	CTRYAG	1 cut(s)	582
BstV1I	GCAGC	2 cut(s)	913, 1057
BstV2I	GAAGAC	2 cut(s)	798, 1295
BstX2I	RGATCY	1 cut(s)	748
BstYI	RGATCY	1 cut(s)	748
Bsu36I	CCTNAGG	1 cut(s)	546
BtsCI	GGATG	7 cut(s)	208, 327, 337, 439, 502, 862, 1279
BveI	ACCTGC	2 cut(s)	617, 674
Cac8I	GCNNGC	2 cut(s)	624, 1267
CfoI	GCGC	1 cut(s)	478
Cfr13I	GGNCC	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	1094
CviAII	CATG	6 cut(s)	238, 597, 724, 896, 1129, 1303
CviQI	GTAC	1 cut(s)	1094
DdeI	CTNAG	5 cut(s)	99, 546, 679, 1261, 1293
DpnI	GATC	1 cut(s)	750
DpnII	GATC	1 cut(s)	748
DriI	GACNNNNNGTC	1 cut(s)	592
Eam1104I	CTCTTC	2 cut(s)	882, 1197
Eam1105I	GACNNNNNGTC	1 cut(s)	592
EarI	CTCTTC	2 cut(s)	882, 1197
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	3 cut(s)	704, 973, 1081
Eco24I	GRGCYC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	431
Eco72I	CACGTG	1 cut(s)	767
Eco81I	CCTNAGG	1 cut(s)	546
EcoICRI	GAGCTC	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	550
EcoRI	GAATTC	1 cut(s)	741
EcoT14I	CCWWGG	3 cut(s)	704, 973, 1081
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	3 cut(s)	704, 973, 1081
FaeI	CATG	6 cut(s)	241, 600, 727, 899, 1132, 1306
FaqI	GGGAC	2 cut(s)	684, 1238
FatI	CATG	6 cut(s)	237, 596, 723, 895, 1128, 1302
FauNDI	CATATG	1 cut(s)	1197
Fnu4HI	GCNGC	2 cut(s)	927, 1071
FokI	GGATG	7 cut(s)	195, 334, 344, 446, 509, 869, 1286
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	2 cut(s)	927, 1071
FspBI	CTAG	3 cut(s)	90, 1029, 1307
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	2 cut(s)	927, 1071
GsaI	CCCAGC	1 cut(s)	1140
HhaI	GCGC	1 cut(s)	478
Hin1II	CATG	6 cut(s)	241, 600, 727, 899, 1132, 1306
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HincII	GTYRAC	1 cut(s)	8
HindII	GTYRAC	1 cut(s)	8
HinfI	GANTC	4 cut(s)	4, 127, 647, 881
HphI	GGTGA	3 cut(s)	71, 698, 1219
Hpy166II	GTNNAC	3 cut(s)	8, 310, 1023
Hpy188I	TCNGA	4 cut(s)	100, 321, 460, 886
Hpy188III	TCNNGA	6 cut(s)	131, 545, 746, 788, 805, 1029
Hpy8I	GTNNAC	3 cut(s)	8, 310, 1023
HpyAV	CCTTC	5 cut(s)	42, 136, 904, 955, 1197
HpyCH4III	ACNGT	1 cut(s)	612
HpyCH4IV	ACGT	5 cut(s)	68, 340, 537, 766, 1092
HpyCH4V	TGCA	6 cut(s)	74, 368, 584, 626, 1073, 1184
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 935
HpyF3I	CTNAG	5 cut(s)	99, 546, 679, 1261, 1293
HpySE526I	ACGT	5 cut(s)	68, 340, 537, 766, 1092
Hsp92II	CATG	6 cut(s)	241, 600, 727, 899, 1132, 1306
HspAI	GCGC	1 cut(s)	476
Kzo9I	GATC	1 cut(s)	748
LguI	GCTCTTC	1 cut(s)	882
LmnI	GCTCC	3 cut(s)	243, 547, 575
Lsp1109I	GCAGC	2 cut(s)	913, 1057
LweI	GCATC	3 cut(s)	217, 424, 1022
MaeI	CTAG	3 cut(s)	90, 1029, 1307
MaeII	ACGT	5 cut(s)	68, 340, 537, 766, 1092
MaeIII	GTNAC	5 cut(s)	277, 629, 769, 819, 898
MalI	GATC	1 cut(s)	750
MboI	GATC	1 cut(s)	748
MboII	GAAGA	8 cut(s)	803, 854, 899, 926, 1076, 1111, 1184, 1300
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	2 cut(s)	294, 894
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	299, 376
MslI	CAYNNNNRTG	2 cut(s)	213, 1030
MspA1I	CMGCKG	1 cut(s)	926
MspCI	CTTAAG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	940
MwoI	GCNNNNNNNGC	2 cut(s)	205, 935
NdeI	CATATG	1 cut(s)	1197
NdeII	GATC	1 cut(s)	748
NlaIII	CATG	6 cut(s)	241, 600, 727, 899, 1132, 1306
NlaIV	GGNNCC	4 cut(s)	111, 446, 721, 750
NmuCI	GTSAC	2 cut(s)	769, 819
NspI	RCATGY	1 cut(s)	1306
PaqCI	CACCTGC	1 cut(s)	674
PciSI	GCTCTTC	1 cut(s)	882
PctI	GAATGC	1 cut(s)	940
PfeI	GAWTC	3 cut(s)	127, 647, 881
PkrI	GCNGC	2 cut(s)	928, 1072
PleI	GAGTC	1 cut(s)	12
PmaCI	CACGTG	1 cut(s)	767
PmlI	CACGTG	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	2 cut(s)	341, 767
PpuMI	RGGWCCY	1 cut(s)	550
PshAI	GACNNNNGTC	1 cut(s)	767
PshBI	ATTAAT	1 cut(s)	363
PsiI	TTATAA	1 cut(s)	659
Psp124BI	GAGCTC	1 cut(s)	294
Psp1406I	AACGTT	1 cut(s)	68
Psp5II	RGGWCCY	1 cut(s)	550
PspCI	CACGTG	1 cut(s)	767
PspFI	CCCAGC	1 cut(s)	1136
PspN4I	GGNNCC	4 cut(s)	111, 446, 721, 750
PspPI	GGNCC	1 cut(s)	550
PspPPI	RGGWCCY	1 cut(s)	550
PstI	CTGCAG	1 cut(s)	586
PsuI	RGATCY	1 cut(s)	748
PvuII	CAGCTG	1 cut(s)	926
RsaI	GTAC	1 cut(s)	1095
RsaNI	GTAC	1 cut(s)	1094
RseI	CAYNNNNRTG	2 cut(s)	213, 1030
SacI	GAGCTC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	882
SatI	GCNGC	2 cut(s)	927, 1071
Sau3AI	GATC	1 cut(s)	748
Sau96I	GGNCC	1 cut(s)	550
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	294, 894
SfaNI	GCATC	3 cut(s)	217, 424, 1022
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	1 cut(s)	550
SmiMI	CAYNNNNRTG	2 cut(s)	213, 1030
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SspMI	CTAG	3 cut(s)	90, 1029, 1307
SstI	GAGCTC	1 cut(s)	294
StyI	CCWWGG	3 cut(s)	704, 973, 1081
TaaI	ACNGT	1 cut(s)	612
TaiI	ACGT	5 cut(s)	71, 343, 540, 769, 1095
TaqI	TCGA	2 cut(s)	739, 959
TfiI	GAWTC	3 cut(s)	127, 647, 881
TseFI	GTSAC	2 cut(s)	769, 819
TseI	GCWGC	2 cut(s)	926, 1070
Tsp45I	GTSAC	2 cut(s)	769, 819
TspDTI	ATGAA	7 cut(s)	209, 348, 740, 947, 1043, 1145, 1184
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	550
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	6 cut(s)	94, 421, 689, 741, 783, 979
XbaI	TCTAGA	1 cut(s)	1028
XceI	RCATGY	1 cut(s)	1306
XspI	CTAG	3 cut(s)	90, 1029, 1307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.