Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004420

Physical Location & Seq

Genomic Coordinates Forward (+)

28873694 .. 28875519

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0257000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGAGGCGGCGTGATGAGGACGGCGGCGAAGGTGGCCGGGATCGGCAGCGTCATGCACGGCGGGCTGCGCGGCTCGCCGGCGGCTCCGTCGTCCGGCAAGTCGGTGCGGACGGCCTCGGTCCCCGTCGCGGCGGGGATATCGGCGCAGAGCGGTAAGGGGGGTGATAGGTCGGCGATCGAGAAGCCGTTGCTGGAGGCGACGACGGCGGAGGACTGGCAAATGGTCGGCGAGGGGGAGTTGGTGATGTCGGCCGGCGAGCCGATGCCGAGGGTTGTGTTCGGCGCCGCTCCGAGCTTCCAGGAGGCCAAAGAGGCCACCGACGAGTTGAAAGATGCTCTGGATAAGGCATACCTATCTTCACCCAAAATTACTGAGCTTGGGGAACTGACTGCTGCTGATAAGGTGTCGGGGCTGTCTCAGCTTTCAAACCCTGAGGCAGAGTCCCTTCTTATTACTAGGACTTCAGTGCCACAACATGCTTACCAGGCATTTGAACTGCTGAGTCGAAGTACTGAGGCTCAGAATGTTGTTGCTTCGATTGCAAGTGACCCAAATATCTGGAATGCTATGATGGAAAATTCTGCGGTCAAACAATTCATGGAGTCTCAACAAAACATAAATTATGCTCGGTATGAATCTGAAGCTTCAGATTCGGAGGTTTTCAATCCGGTATCATCTAAGGAGATCGTAGAGGAACATGATTCAAGCCAATCTTTTGACCTGGAACGTCTGTTCAATGGTTTTGTGGATAAAGTCAAGCTTACTGTCAATACCATTGTTAGCAATTTGTCGACATACATTCAAAGCATTTTTGGACCCCCTGCAGATGACAATGGGCCTACCAGAACTGCAATAACATCTGGGTTCATGGGACTGGCAGTTATGGTTGTAATGGTGGTTTTGCTGAAGCGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

306

Amino Acids

32.38

Weight (kDa)

4.81

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26980 AT2G26980 AT2G26980 AT2G26980 AT5G21326
fragaria_vesca	FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610
malus_domestica	MD03G1163600.v1.1
prunus_persica	Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050061
rosa_laevigata	RLG00000034683
rosa_multiflora	Rmu_sc0000333.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031070
rosa_rugosa	Rorug05G0257000 Rorug05G0257100 Rorug05G0257200.1 Rorug05G0257300 Rorug05G0257400
rosa_samantha	Rh5AG330200 Rh5BG340900 Rh5CG367500 Rh5DG353700
rosa_wichuraiana	Rw5G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccBSI	CCGCTC	2 cut(s)	153, 290
AccI	GTMKAC	1 cut(s)	794
AccII	CGCG	2 cut(s)	72, 131
AclWI	GGATC	1 cut(s)	50
AcoI	YGGCCR	2 cut(s)	36, 252
AcsI	RAATTY	1 cut(s)	580
AcuI	CTGAAG	3 cut(s)	450, 633, 663
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	2 cut(s)	95, 130
AgsI	TTSAA	7 cut(s)	331, 429, 497, 667, 708, 739, 806
AjnI	CCWGG	3 cut(s)	300, 486, 723
AloI	GAACNNNNNNTCC	2 cut(s)	719, 751
AluBI	AGCT	5 cut(s)	297, 379, 424, 647, 763
AluI	AGCT	5 cut(s)	297, 379, 424, 647, 763
Alw26I	GTCTC	2 cut(s)	423, 612
AlwI	GGATC	1 cut(s)	50
AoxI	GGCC	6 cut(s)	36, 114, 252, 306, 315, 839
ApeKI	GCWGC	3 cut(s)	48, 67, 395
ApoI	RAATTY	1 cut(s)	580
AspLEI	GCGC	3 cut(s)	72, 148, 287
AspS9I	GGNCC	3 cut(s)	121, 818, 839
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	3 cut(s)	176, 256, 354
AvaII	GGWCC	2 cut(s)	121, 818
AxyI	CCTNAGG	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	54, 60, 382
BccI	CCATC	1 cut(s)	568
BceAI	ACGGC	5 cut(s)	39, 76, 129, 172, 222
BciT130I	CCWGG	3 cut(s)	302, 488, 725
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	423, 612
BfaI	CTAG	2 cut(s)	459, 919
BfmI	CTRYAG	1 cut(s)	825
BfoI	RGCGCY	1 cut(s)	288
BglI	GCCNNNNNGGC	1 cut(s)	314
BisI	GCNGC	9 cut(s)	10, 27, 49, 68, 73, 84, 132, 288, 396
BlsI	GCNGC	9 cut(s)	11, 28, 50, 69, 74, 85, 133, 289, 397
BmcAI	AGTACT	1 cut(s)	514
Bme1390I	CCNGG	4 cut(s)	40, 302, 488, 725
Bme18I	GGWCC	2 cut(s)	121, 818
BmgT120I	GGNCC	3 cut(s)	121, 818, 839
BmiI	GGNNCC	4 cut(s)	87, 123, 286, 820
BmrFI	CCNGG	4 cut(s)	40, 302, 488, 725
BmsI	GCATC	2 cut(s)	255, 325
BpmI	CTGGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	117, 269
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 130
Bse118I	RCCGGY	2 cut(s)	79, 254
Bse1I	ACTGG	2 cut(s)	221, 882
Bse21I	CCTNAGG	1 cut(s)	435
BseBI	CCWGG	3 cut(s)	302, 488, 725
BseDI	CCNNGG	2 cut(s)	117, 269
BseLI	CCNNNNNNNGG	2 cut(s)	95, 130
BseMII	CTCAG	6 cut(s)	366, 426, 434, 494, 507, 536
BseNI	ACTGG	2 cut(s)	221, 882
BseX3I	CGGCCG	1 cut(s)	252
BseXI	GCAGC	3 cut(s)	54, 60, 382
Bsh1236I	CGCG	2 cut(s)	72, 131
Bsh1285I	CGRYCG	2 cut(s)	180, 255
BshFI	GGCC	6 cut(s)	38, 116, 254, 308, 317, 841
BshNI	GGYRCC	1 cut(s)	284
BsiEI	CGRYCG	2 cut(s)	180, 255
BsiSI	CCGG	5 cut(s)	39, 80, 96, 255, 671
BslFI	GGGAC	3 cut(s)	107, 430, 888
BslI	CCNNNNNNNGG	2 cut(s)	95, 130
BsmAI	GTCTC	2 cut(s)	423, 612
BsmFI	GGGAC	3 cut(s)	107, 430, 888
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	6 cut(s)	38, 116, 254, 308, 317, 841
Bsp143I	GATC	3 cut(s)	42, 177, 687
BspANI	GGCC	6 cut(s)	38, 116, 254, 308, 317, 841
BspCNI	CTCAG	6 cut(s)	367, 427, 433, 495, 508, 535
BspFNI	CGCG	2 cut(s)	72, 131
BspLI	GGNNCC	4 cut(s)	87, 123, 286, 820
BspMAI	CTGCAG	1 cut(s)	829
BspPI	GGATC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	284
BsrBI	CCGCTC	2 cut(s)	153, 290
BsrFI	RCCGGY	2 cut(s)	79, 254
BsrI	ACTGG	2 cut(s)	221, 882
BssAI	RCCGGY	2 cut(s)	79, 254
BssECI	CCNNGG	2 cut(s)	117, 269
BssMI	GATC	3 cut(s)	42, 177, 687
BssNI	GRCGYC	1 cut(s)	285
Bst2UI	CCWGG	3 cut(s)	302, 488, 725
Bst4CI	ACNGT	1 cut(s)	769
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	6 cut(s)	65, 77, 81, 256, 260, 915
BstDEI	CTNAG	7 cut(s)	375, 420, 435, 503, 516, 522, 681
BstFNI	CGCG	2 cut(s)	72, 131
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	3 cut(s)	72, 148, 287
BstKTI	GATC	3 cut(s)	45, 180, 690
BstMAI	GTCTC	2 cut(s)	423, 612
BstMBI	GATC	3 cut(s)	42, 177, 687
BstMCI	CGRYCG	2 cut(s)	180, 255
BstMWI	GCNNNNNNNGC	9 cut(s)	35, 64, 69, 76, 206, 314, 421, 488, 542
BstNI	CCWGG	3 cut(s)	302, 488, 725
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	4 cut(s)	38, 300, 486, 723
BstSFI	CTRYAG	1 cut(s)	825
BstUI	CGCG	2 cut(s)	72, 131
BstV1I	GCAGC	3 cut(s)	54, 60, 382
BstXI	CCANNNNNNTGG	1 cut(s)	561
BstZI	CGGCCG	1 cut(s)	252
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	6 cut(s)	38, 116, 254, 308, 317, 841
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	6 cut(s)	65, 77, 81, 256, 260, 915
CfoI	GCGC	3 cut(s)	72, 148, 287
Cfr10I	RCCGGY	2 cut(s)	79, 254
Cfr13I	GGNCC	3 cut(s)	121, 818, 839
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	5 cut(s)	55, 479, 601, 701, 871
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	7 cut(s)	375, 420, 435, 503, 516, 522, 681
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	3 cut(s)	44, 179, 689
DpnII	GATC	3 cut(s)	42, 177, 687
EaeI	YGGCCR	2 cut(s)	36, 252
EagI	CGGCCG	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	224
EclXI	CGGCCG	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	121, 818
Eco52I	CGGCCG	1 cut(s)	252
Eco57I	CTGAAG	3 cut(s)	450, 633, 663
Eco81I	CCTNAGG	1 cut(s)	435
EcoRII	CCWGG	3 cut(s)	300, 486, 723
EcoRV	GATATC	1 cut(s)	141
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
FaeI	CATG	5 cut(s)	58, 482, 604, 704, 874
FalI	AAGNNNNNCTT	4 cut(s)	700, 732, 747, 779
FaqI	GGGAC	3 cut(s)	107, 430, 888
FatI	CATG	5 cut(s)	54, 478, 600, 700, 870
FauI	CCCGC	2 cut(s)	56, 127
FblI	GTMKAC	1 cut(s)	794
Fnu4HI	GCNGC	9 cut(s)	10, 27, 49, 68, 73, 84, 132, 288, 396
Fsp4HI	GCNGC	9 cut(s)	10, 27, 49, 68, 73, 84, 132, 288, 396
FspBI	CTAG	2 cut(s)	459, 919
GlaI	GCGC	3 cut(s)	71, 147, 286
GluI	GCNGC	9 cut(s)	10, 27, 49, 68, 73, 84, 132, 288, 396
GsuI	CTGGAG	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	6 cut(s)	38, 116, 254, 308, 317, 841
HapII	CCGG	5 cut(s)	39, 80, 96, 255, 671
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	3 cut(s)	72, 148, 287
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	5 cut(s)	58, 482, 604, 704, 874
Hin6I	GCGC	3 cut(s)	70, 146, 285
HinP1I	GCGC	3 cut(s)	70, 146, 285
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HindIII	AAGCTT	2 cut(s)	645, 761
HinfI	GANTC	6 cut(s)	443, 505, 605, 638, 653, 704
HpaII	CCGG	5 cut(s)	39, 80, 96, 255, 671
HphI	GGTGA	3 cut(s)	176, 256, 354
Hpy166II	GTNNAC	1 cut(s)	795
Hpy188I	TCNGA	5 cut(s)	294, 525, 643, 652, 658
Hpy188III	TCNNGA	3 cut(s)	181, 341, 562
Hpy8I	GTNNAC	1 cut(s)	795
Hpy99I	CGWCG	5 cut(s)	94, 131, 205, 208, 326
HpyAV	CCTTC	2 cut(s)	25, 458
HpyCH4III	ACNGT	1 cut(s)	769
HpyCH4IV	ACGT	1 cut(s)	730
HpyCH4V	TGCA	4 cut(s)	58, 545, 827, 854
HpyF10VI	GCNNNNNNNGC	9 cut(s)	35, 64, 69, 76, 206, 314, 421, 488, 542
HpyF3I	CTNAG	7 cut(s)	375, 420, 435, 503, 516, 522, 681
HpySE526I	ACGT	1 cut(s)	730
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	5 cut(s)	58, 482, 604, 704, 874
HspAI	GCGC	3 cut(s)	70, 146, 285
KasI	GGCGCC	1 cut(s)	284
KroI	GCCGGC	2 cut(s)	79, 254
KroNI	GCCGGC	2 cut(s)	81, 256
Kzo9I	GATC	3 cut(s)	42, 177, 687
LmnI	GCTCC	2 cut(s)	91, 295
Lsp1109I	GCAGC	3 cut(s)	54, 60, 382
LweI	GCATC	2 cut(s)	255, 325
MaeI	CTAG	2 cut(s)	459, 919
MaeII	ACGT	1 cut(s)	730
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	3 cut(s)	44, 179, 689
MbiI	CCGCTC	2 cut(s)	153, 290
MboI	GATC	3 cut(s)	42, 177, 687
MboII	GAAGA	1 cut(s)	351
MluCI	AATT	5 cut(s)	369, 580, 596, 622, 787
Mly113I	GGCGCC	1 cut(s)	285
MlyI	GAGTC	3 cut(s)	452, 514, 614
MreI	CGCCGGCG	1 cut(s)	79
MroNI	GCCGGC	2 cut(s)	79, 254
MspI	CCGG	5 cut(s)	39, 80, 96, 255, 671
MspR9I	CCNGG	4 cut(s)	40, 302, 488, 725
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	3 cut(s)	302, 488, 725
MvnI	CGCG	2 cut(s)	72, 131
MwoI	GCNNNNNNNGC	9 cut(s)	35, 64, 69, 76, 206, 314, 421, 488, 542
NaeI	GCCGGC	2 cut(s)	81, 256
NarI	GGCGCC	1 cut(s)	285
NciI	CCSGG	1 cut(s)	40
NdeII	GATC	3 cut(s)	42, 177, 687
NgoMIV	GCCGGC	2 cut(s)	79, 254
NlaIII	CATG	5 cut(s)	58, 482, 604, 704, 874
NlaIV	GGNNCC	4 cut(s)	87, 123, 286, 820
NmeAIII	GCCGAG	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	548
NspI	RCATGY	1 cut(s)	482
PctI	GAATGC	1 cut(s)	571
PdiI	GCCGGC	2 cut(s)	81, 256
PfeI	GAWTC	3 cut(s)	638, 653, 704
PfoI	TCCNGGA	1 cut(s)	300
PkrI	GCNGC	9 cut(s)	11, 28, 50, 69, 74, 85, 133, 289, 397
Ple19I	CGATCG	1 cut(s)	180
PleI	GAGTC	3 cut(s)	451, 513, 613
PluTI	GGCGCC	1 cut(s)	288
PpsI	GAGTC	3 cut(s)	451, 513, 613
Psp6I	CCWGG	3 cut(s)	300, 486, 723
PspGI	CCWGG	3 cut(s)	300, 486, 723
PspN4I	GGNNCC	4 cut(s)	87, 123, 286, 820
PspPI	GGNCC	3 cut(s)	121, 818, 839
PstI	CTGCAG	1 cut(s)	829
PvuI	CGATCG	1 cut(s)	180
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
SalI	GTCGAC	1 cut(s)	793
SatI	GCNGC	9 cut(s)	10, 27, 49, 68, 73, 84, 132, 288, 396
Sau3AI	GATC	3 cut(s)	42, 177, 687
Sau96I	GGNCC	3 cut(s)	121, 818, 839
ScaI	AGTACT	1 cut(s)	514
SchI	GAGTC	3 cut(s)	452, 514, 614
ScrFI	CCNGG	4 cut(s)	40, 302, 488, 725
SfaNI	GCATC	2 cut(s)	255, 325
SfcI	CTRYAG	1 cut(s)	825
SfiI	GGCCNNNNNGGCC	1 cut(s)	314
SfoI	GGCGCC	1 cut(s)	286
SgrAI	CRCCGGYG	1 cut(s)	79
SinI	GGWCC	2 cut(s)	121, 818
Sse9I	AATT	5 cut(s)	369, 580, 596, 622, 787
SspDI	GGCGCC	1 cut(s)	284
SspMI	CTAG	2 cut(s)	459, 919
StyD4I	CCNGG	4 cut(s)	38, 300, 486, 723
TaaI	ACNGT	1 cut(s)	769
TaiI	ACGT	1 cut(s)	733
TaqI	TCGA	4 cut(s)	180, 508, 539, 794
TaqII	GACCGA	1 cut(s)	109
TasI	AATT	5 cut(s)	369, 580, 596, 622, 787
TatI	WGTACW	1 cut(s)	512
TauI	GCSGC	6 cut(s)	12, 29, 75, 86, 134, 290
TfiI	GAWTC	3 cut(s)	638, 653, 704
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	3 cut(s)	48, 67, 395
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	3 cut(s)	589, 651, 859
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	474
VpaK11BI	GGWCC	2 cut(s)	121, 818
XapI	RAATTY	1 cut(s)	580
XceI	RCATGY	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	794
XspI	CTAG	2 cut(s)	459, 919
ZrmI	AGTACT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.