Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004420

Physical Location & Seq

Genomic Coordinates Forward (+)

48298543 .. 48306425

Gene Structure 7883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG340900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGAATGCGCAAGATGAGGCAATAGGCTGGAGGGCTGAGAAGGGATCACTTGCAGGGGAAAGACAACTTCGTATAGGAATTAGTAAAACTAGCACAACATTTTGGTTGTTCCTTGAGTTGATTTCCTTATACTACATTCTCTTTATGCATAATTTTATGCATTTTCAGGTCATGGGGAGCAAGACAAAGATATTTATAGTTATGGAGTTTGTTACTGGGGGAGAGCTCTTTGACAAAATTGTAAACAATGGTCGGATGAGAGAGGATGAAGCACGTAGATATTTCCAACAGCTTATTAATGCAGTTGATTACTGCCATAGCAGAGGAGTATATCACAGAGACCTGAAGCCAGAAAATTTGCTATTGGATGCCTATGGGAACCTTAAAGTTTCTGATTTTGGATTGAGTGCGCTGTCTCAACAAGTCAGGGATGATGGCTTACTTCACACTACCTGTGGAACTCCAAATTACGTTGCTCCTGAGGTCCTTAATGATAGAGGCTATGATGGAGCAACTGCGGACTTGTGGTCATGTGGAGTGATACTGTTTGTATTGCTTGCAGGTTACTTGCCGTTTGATGATTCTAATCTTATAAACCTCTATAAAAAAATCTCAGCAGGTGAATTTACATGTCCCCCTTGGCTGTCGTTTGGTGCCATGAAACTAATAGCTCGAATTCTGGATCCCAACCCTATGACGCGTATCACTATTGCTGAAATTCTGGAAGACGAATGGTTCAAGAAAGATTACAAGTCACTTATGTTTGAGGAGAAAGAAGATACAAACTTGGATGATGTAGAAGCTGTTTTTAAGGATTCAGAAGAGCACCATGTAACAGAAAAGAAGGAAGAACAACCAGCAGCTATGAATGCTTTTGAGTTAATTTCAATGTCGAAGGGGCTGAACCTTGGGAATTTGTTTGATGTAGAACAGGGTTTTAAGAGAGAAACAAGGTTCACCTCTAGATGCCCTGCTAACGAGATAATTCATAAAATTGAAGAAGCTGCAAAGCCCCTTGGTTTTGACGTACAGAAGAAAAATTACAAGTTGAGGCTGGAAAACATGAAAGCTGGGAGAAAGGGAAACCTTAATGTTGCCACAGAGATATTTCAAGTTGCACCTTCTCTTCATATGGTTGAGGTGAGAAAAGCCAAAGGGGACACATTGGAGTTCCACAAGTTCTATAAGAACCTCTCAACAAGCTTGGATGATGTTGTTTGGAAGACTGAGGAGGACATGCTAGAAATGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

417

Amino Acids

47.82

Weight (kDa)

5.45

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	56 - 246	1.4e-52	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	57 - 242	1.3e-22	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	87 - 194	7.7e-06	Kinase-like
NAM-associated	PF14303	250 - 397	1.6e-06	No apical meristem-associated C-terminal domain
NAF	PF03822	286 - 345	1e-23	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26980 AT2G26980 AT2G26980 AT2G26980 AT5G21326
fragaria_vesca	FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610
malus_domestica	MD03G1163600.v1.1
prunus_persica	Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050061
rosa_laevigata	RLG00000034683
rosa_multiflora	Rmu_sc0000333.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031070
rosa_rugosa	Rorug05G0257000 Rorug05G0257100 Rorug05G0257200.1 Rorug05G0257300 Rorug05G0257400
rosa_samantha	Rh5AG330200 Rh5BG340900 Rh5CG367500 Rh5DG353700
rosa_wichuraiana	Rw5G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	593
AarI	CACCTGC	1 cut(s)	608
Acc16I	TGCGCA	1 cut(s)	9
Acc36I	ACCTGC	2 cut(s)	551, 608
AccB1I	GGYRCC	1 cut(s)	653
AccII	CGCG	1 cut(s)	700
AciI	CCGC	1 cut(s)	518
AclWI	GGATC	3 cut(s)	52, 677, 690
AcsI	RAATTY	5 cut(s)	355, 623, 675, 717, 913
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	1029
AflIII	ACRYGT	2 cut(s)	629, 698
AgsI	TTSAA	4 cut(s)	739, 888, 998, 1112
AhdI	GACNNNNNGTC	1 cut(s)	526
AluBI	AGCT	8 cut(s)	226, 292, 671, 803, 863, 1004, 1070, 1203
AluI	AGCT	8 cut(s)	226, 292, 671, 803, 863, 1004, 1070, 1203
Alw21I	GWGCWC	2 cut(s)	228, 828
Alw26I	GTCTC	2 cut(s)	333, 420
AlwI	GGATC	3 cut(s)	52, 677, 690
ApeKI	GCWGC	2 cut(s)	860, 1004
ApoI	RAATTY	5 cut(s)	355, 623, 675, 717, 913
AseI	ATTAAT	1 cut(s)	297
AspLEI	GCGC	2 cut(s)	10, 412
AspS9I	GGNCC	1 cut(s)	484
AsuHPI	GGTGA	3 cut(s)	632, 949, 1153
AvaII	GGWCC	1 cut(s)	484
AxyI	CCTNAGG	1 cut(s)	480
BamHI	GGATCC	1 cut(s)	682
BanI	GGYRCC	1 cut(s)	653
BanII	GRGCYC	1 cut(s)	228
BarI	GAAGNNNNNNTAC	2 cut(s)	1025, 1057
BbsI	GAAGAC	2 cut(s)	732, 1229
Bbv12I	GWGCWC	2 cut(s)	228, 828
BbvI	GCAGC	2 cut(s)	872, 991
BccI	CCATC	2 cut(s)	428, 500
BceAI	ACGGC	1 cut(s)	556
BcoDI	GTCTC	2 cut(s)	333, 420
BfaI	CTAG	3 cut(s)	90, 963, 1241
BfuAI	ACCTGC	2 cut(s)	551, 608
BisI	GCNGC	2 cut(s)	861, 1005
BlsI	GCNGC	2 cut(s)	862, 1006
Bme18I	GGWCC	1 cut(s)	484
BmeRI	GACNNNNNGTC	1 cut(s)	526
BmgT120I	GGNCC	1 cut(s)	484
BmiI	GGNNCC	3 cut(s)	380, 655, 684
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	358, 956
BmuI	ACTGGG	1 cut(s)	225
BpiI	GAAGAC	2 cut(s)	732, 1229
BpmI	CTGGAG	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	333
BsaJI	CCNNGG	3 cut(s)	638, 907, 1015
Bse1I	ACTGG	1 cut(s)	220
Bse21I	CCTNAGG	1 cut(s)	480
Bse8I	GATNNNNATC	1 cut(s)	585
BseDI	CCNNGG	3 cut(s)	638, 907, 1015
BseGI	GGATG	6 cut(s)	261, 271, 373, 436, 796, 1213
BseJI	GATNNNNATC	1 cut(s)	585
BseMII	CTCAG	4 cut(s)	27, 471, 627, 1218
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	3 cut(s)	339, 782, 1244
BseXI	GCAGC	2 cut(s)	872, 991
BseYI	CCCAGC	1 cut(s)	1070
Bsh1236I	CGCG	1 cut(s)	700
BshNI	GGYRCC	1 cut(s)	653
BsiHKAI	GWGCWC	2 cut(s)	228, 828
BslFI	GGGAC	2 cut(s)	618, 1172
BsmAI	GTCTC	2 cut(s)	333, 420
BsmFI	GGGAC	2 cut(s)	618, 1172
BsmI	GAATGC	2 cut(s)	10, 874
Bso31I	GGTCTC	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	228, 828
Bsp143I	GATC	2 cut(s)	44, 682
BspACI	CCGC	1 cut(s)	518
BspCNI	CTCAG	4 cut(s)	28, 472, 626, 1219
BspFNI	CGCG	1 cut(s)	700
BspLI	GGNNCC	3 cut(s)	380, 655, 684
BspMI	ACCTGC	2 cut(s)	551, 608
BspPI	GGATC	3 cut(s)	52, 677, 690
BspQI	GCTCTTC	1 cut(s)	816
BspT107I	GGYRCC	1 cut(s)	653
BspTNI	GGTCTC	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	3 cut(s)	638, 907, 1015
BssMI	GATC	2 cut(s)	44, 682
BssT1I	CCWWGG	3 cut(s)	638, 907, 1015
Bst4CI	ACNGT	1 cut(s)	546
Bst6I	CTCTTC	2 cut(s)	816, 1131
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	4 cut(s)	36, 480, 613, 1227
BstF5I	GGATG	6 cut(s)	261, 271, 373, 436, 796, 1213
BstFNI	CGCG	1 cut(s)	700
BstHHI	GCGC	2 cut(s)	10, 412
BstKTI	GATC	2 cut(s)	47, 685
BstMAI	GTCTC	2 cut(s)	333, 420
BstMBI	GATC	2 cut(s)	44, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	869
BstNSI	RCATGY	2 cut(s)	633, 1240
BstUI	CGCG	1 cut(s)	700
BstV1I	GCAGC	2 cut(s)	872, 991
BstV2I	GAAGAC	2 cut(s)	732, 1229
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
Bsu36I	CCTNAGG	1 cut(s)	480
BtsCI	GGATG	6 cut(s)	261, 271, 373, 436, 796, 1213
BveI	ACCTGC	2 cut(s)	551, 608
Cac8I	GCNNGC	1 cut(s)	558
CfoI	GCGC	2 cut(s)	10, 412
Cfr13I	GGNCC	1 cut(s)	484
CseI	GACGC	1 cut(s)	706
Csp6I	GTAC	1 cut(s)	1028
CviAII	CATG	7 cut(s)	172, 531, 630, 658, 830, 1063, 1237
CviQI	GTAC	1 cut(s)	1028
DdeI	CTNAG	4 cut(s)	36, 480, 613, 1227
DpnI	GATC	2 cut(s)	46, 684
DpnII	GATC	2 cut(s)	44, 682
DriI	GACNNNNNGTC	1 cut(s)	526
Eam1104I	CTCTTC	2 cut(s)	816, 1131
Eam1105I	GACNNNNNGTC	1 cut(s)	526
EarI	CTCTTC	2 cut(s)	816, 1131
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	3 cut(s)	638, 907, 1015
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	484
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	365
Eco81I	CCTNAGG	1 cut(s)	480
EcoICRI	GAGCTC	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRI	GAATTC	1 cut(s)	675
EcoT14I	CCWWGG	3 cut(s)	638, 907, 1015
EcoT22I	ATGCAT	2 cut(s)	150, 162
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	3 cut(s)	638, 907, 1015
FaeI	CATG	7 cut(s)	175, 534, 633, 661, 833, 1066, 1240
FaqI	GGGAC	2 cut(s)	618, 1172
FatI	CATG	7 cut(s)	171, 530, 629, 657, 829, 1062, 1236
FauNDI	CATATG	1 cut(s)	1131
Fnu4HI	GCNGC	2 cut(s)	861, 1005
FokI	GGATG	6 cut(s)	268, 278, 380, 443, 803, 1220
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	861, 1005
FspBI	CTAG	3 cut(s)	90, 963, 1241
FspI	TGCGCA	1 cut(s)	9
GlaI	GCGC	2 cut(s)	9, 411
GluI	GCNGC	2 cut(s)	861, 1005
GsaI	CCCAGC	1 cut(s)	1074
GsuI	CTGGAG	1 cut(s)	49
HgaI	GACGC	1 cut(s)	706
HhaI	GCGC	2 cut(s)	10, 412
Hin1II	CATG	7 cut(s)	175, 534, 633, 661, 833, 1066, 1240
Hin6I	GCGC	2 cut(s)	8, 410
HinP1I	GCGC	2 cut(s)	8, 410
HindIII	AAGCTT	1 cut(s)	1201
HinfI	GANTC	2 cut(s)	581, 815
HphI	GGTGA	3 cut(s)	632, 949, 1153
Hpy166II	GTNNAC	2 cut(s)	244, 957
Hpy188I	TCNGA	3 cut(s)	255, 394, 820
Hpy188III	TCNNGA	5 cut(s)	479, 680, 722, 739, 963
Hpy8I	GTNNAC	2 cut(s)	244, 957
HpyAV	CCTTC	4 cut(s)	34, 838, 889, 1131
HpyCH4III	ACNGT	1 cut(s)	546
HpyCH4IV	ACGT	3 cut(s)	274, 471, 1026
HpyCH4V	TGCA	7 cut(s)	53, 148, 160, 302, 560, 1007, 1118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	869
HpyF3I	CTNAG	4 cut(s)	36, 480, 613, 1227
HpySE526I	ACGT	3 cut(s)	274, 471, 1026
Hsp92II	CATG	7 cut(s)	175, 534, 633, 661, 833, 1066, 1240
HspAI	GCGC	2 cut(s)	8, 410
Kzo9I	GATC	2 cut(s)	44, 682
LguI	GCTCTTC	1 cut(s)	816
LmnI	GCTCC	3 cut(s)	177, 481, 509
Lsp1109I	GCAGC	2 cut(s)	872, 991
LweI	GCATC	2 cut(s)	358, 956
MaeI	CTAG	3 cut(s)	90, 963, 1241
MaeII	ACGT	3 cut(s)	274, 471, 1026
MaeIII	GTNAC	4 cut(s)	211, 563, 753, 832
MalI	GATC	2 cut(s)	46, 684
MboI	GATC	2 cut(s)	44, 682
MboII	GAAGA	8 cut(s)	737, 788, 833, 860, 1010, 1045, 1118, 1234
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	2 cut(s)	228, 828
MluI	ACGCGT	1 cut(s)	698
MmeI	TCCRAC	2 cut(s)	233, 310
Mph1103I	ATGCAT	2 cut(s)	150, 162
MseI	TTAA	7 cut(s)	297, 384, 489, 810, 881, 939, 1089
Mva1269I	GAATGC	2 cut(s)	10, 874
MvnI	CGCG	1 cut(s)	700
MwoI	GCNNNNNNNGC	1 cut(s)	869
NdeI	CATATG	1 cut(s)	1131
NdeII	GATC	2 cut(s)	44, 682
NlaIII	CATG	7 cut(s)	175, 534, 633, 661, 833, 1066, 1240
NlaIV	GGNNCC	3 cut(s)	380, 655, 684
NmuCI	GTSAC	1 cut(s)	753
NsbI	TGCGCA	1 cut(s)	9
NsiI	ATGCAT	2 cut(s)	150, 162
NspI	RCATGY	2 cut(s)	633, 1240
PaqCI	CACCTGC	1 cut(s)	608
PciI	ACATGT	1 cut(s)	629
PciSI	GCTCTTC	1 cut(s)	816
PctI	GAATGC	2 cut(s)	10, 874
PfeI	GAWTC	2 cut(s)	581, 815
PkrI	GCNGC	2 cut(s)	862, 1006
Ppu21I	YACGTR	1 cut(s)	275
PpuMI	RGGWCCY	1 cut(s)	484
PscI	ACATGT	1 cut(s)	629
PshBI	ATTAAT	1 cut(s)	297
PsiI	TTATAA	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	1070
PspN4I	GGNNCC	3 cut(s)	380, 655, 684
PspPI	GGNCC	1 cut(s)	484
PspPPI	RGGWCCY	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	682
RsaI	GTAC	1 cut(s)	1029
RsaNI	GTAC	1 cut(s)	1028
SacI	GAGCTC	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	816
SaqAI	TTAA	7 cut(s)	297, 384, 489, 810, 881, 939, 1089
SatI	GCNGC	2 cut(s)	861, 1005
Sau3AI	GATC	2 cut(s)	44, 682
Sau96I	GGNCC	1 cut(s)	484
SduI	GDGCHC	2 cut(s)	228, 828
SfaNI	GCATC	2 cut(s)	358, 956
SinI	GGWCC	1 cut(s)	484
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SsiI	CCGC	1 cut(s)	518
SspMI	CTAG	3 cut(s)	90, 963, 1241
SstI	GAGCTC	1 cut(s)	228
StyI	CCWWGG	3 cut(s)	638, 907, 1015
TaaI	ACNGT	1 cut(s)	546
TaiI	ACGT	3 cut(s)	277, 474, 1029
TaqI	TCGA	2 cut(s)	673, 893
TfiI	GAWTC	2 cut(s)	581, 815
Tru1I	TTAA	7 cut(s)	297, 384, 489, 810, 881, 939, 1089
Tru9I	TTAA	7 cut(s)	297, 384, 489, 810, 881, 939, 1089
TseFI	GTSAC	1 cut(s)	753
TseI	GCWGC	2 cut(s)	860, 1004
Tsp45I	GTSAC	1 cut(s)	753
TspDTI	ATGAA	7 cut(s)	17, 282, 674, 881, 977, 1079, 1118
VpaK11BI	GGWCC	1 cut(s)	484
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	5 cut(s)	355, 623, 675, 717, 913
XbaI	TCTAGA	1 cut(s)	962
XceI	RCATGY	2 cut(s)	633, 1240
XspI	CTAG	3 cut(s)	90, 963, 1241
Zsp2I	ATGCAT	2 cut(s)	150, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.