Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004420

Physical Location & Seq

Genomic Coordinates Forward (+)

49066610 .. 49070852

Gene Structure 4243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG353700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAATGCGCAAGATGAGGCAATAGGCTGGAGGGCTGAGAAGGGATCACTTGCAGGGGAAAGACAACTTCGTATAGGAATTAGTAAAACTAGCACAACATTTTGGTTGTTCCTTGAGTTGATTTCCTTATACTACATTCTCTTTATGCATAATTTTATGCATTTTCAGGTCATGGGGAGCAAGACAAAGATATTTATAGTTATGGAGTTTGTTACTGGGGGAGAGCTCTTTGACAAAATTGTAAACAATGGTCGGATGAGAGAGGATGAAGCACGTAGATATTTCCAACAGCTTATTAATGCAGTTGATTACTGCCATAGCAGAGGAGTATATCACAGAGACCTGAAGCCAGAAAATTTGCTATTGGATGCCTATGGGAACCTTAAAGTTTCTGATTTTGGATTGAGTGCGCTGTCTCAACAAGTCAGGGATGATGGCTTACTTCACACTACCTGTGGAACTCCAAATTACGTTGCTCCTGAGATCTCAGCAGGTGAATTTACATGTCCCCCTTGGCTGTCGTTTGGTGCCATGAAACTAATAGCTCGAATTCTGGATCCCAACCCTATGACGCGTATCACTATTGCTGAAATTCTGGAAGACGAATGGTTCAAGAAAGATTACAAGTCACTTATGTTTGAGGAGAAAGAAGATACAAACTTGGATGATGTAGAAGCTGTTTTTAAGGATTCAGAAGAGCACCATGTAACAGAAAAGAAGGAAGAACAACCAGCAGCTATGAATGCTTTTGAGTTAATTTCAATGTCGAAGGGGCTGAACCTTGGGAATTTGTTTGATGTAGAACAGGGTTTTAAGAGAGAAACAAGGTTCACCTCTAGATGCCCTGCTAACGAGATAATTCATAAAATTGAAGAAGCTGCAAAGCCCCTTGGTTTTGACGTACAGAAGAAAAATTACAAGTTGAGGCTGGAAAACATGAAAGCTGGGAGAAAGGGAAACCTTAATGTTGCCACAGAGATATTTCAAGTTGCACCTTCTCTTCATATGGTTGAGGTGAGAAAAGCCAAAGGGGACACATTGGAGTTCCACAAGTTCTATAAGAACCTCTCAACAAGCTTGGATGATGTTGTTTGGAAGACTGAGGAGGACATGCTAGAAATGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

375

Amino Acids

43.17

Weight (kDa)

5.6

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	56 - 162	1.6e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	57 - 162	9.7e-14	Protein tyrosine and serine/threonine kinase
NAM-associated	PF14303	208 - 355	1.2e-06	No apical meristem-associated C-terminal domain
NAF	PF03822	244 - 303	8.6e-24	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26980 AT2G26980 AT2G26980 AT2G26980 AT5G21326
fragaria_vesca	FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610
malus_domestica	MD03G1163600.v1.1
prunus_persica	Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050061
rosa_laevigata	RLG00000034683
rosa_multiflora	Rmu_sc0000333.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031070
rosa_rugosa	Rorug05G0257000 Rorug05G0257100 Rorug05G0257200.1 Rorug05G0257300 Rorug05G0257400
rosa_samantha	Rh5AG330200 Rh5BG340900 Rh5CG367500 Rh5DG353700
rosa_wichuraiana	Rw5G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	482
Acc16I	TGCGCA	1 cut(s)	9
Acc36I	ACCTGC	1 cut(s)	482
AccB1I	GGYRCC	1 cut(s)	527
AccII	CGCG	1 cut(s)	574
AclWI	GGATC	3 cut(s)	52, 551, 564
AcsI	RAATTY	5 cut(s)	355, 497, 549, 591, 787
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	903
AflIII	ACRYGT	2 cut(s)	503, 572
AgsI	TTSAA	4 cut(s)	613, 762, 872, 986
AluBI	AGCT	8 cut(s)	226, 292, 545, 677, 737, 878, 944, 1077
AluI	AGCT	8 cut(s)	226, 292, 545, 677, 737, 878, 944, 1077
Alw21I	GWGCWC	2 cut(s)	228, 702
Alw26I	GTCTC	2 cut(s)	333, 420
AlwI	GGATC	3 cut(s)	52, 551, 564
ApeKI	GCWGC	2 cut(s)	734, 878
ApoI	RAATTY	5 cut(s)	355, 497, 549, 591, 787
AseI	ATTAAT	1 cut(s)	297
AspLEI	GCGC	2 cut(s)	10, 412
AsuHPI	GGTGA	3 cut(s)	506, 823, 1027
BamHI	GGATCC	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	228
BarI	GAAGNNNNNNTAC	2 cut(s)	899, 931
BbsI	GAAGAC	2 cut(s)	606, 1103
Bbv12I	GWGCWC	2 cut(s)	228, 702
BbvI	GCAGC	2 cut(s)	746, 865
BccI	CCATC	1 cut(s)	428
BcoDI	GTCTC	2 cut(s)	333, 420
BfaI	CTAG	3 cut(s)	90, 837, 1115
BfuAI	ACCTGC	1 cut(s)	482
BglII	AGATCT	1 cut(s)	483
BisI	GCNGC	2 cut(s)	735, 879
BlsI	GCNGC	2 cut(s)	736, 880
BmiI	GGNNCC	3 cut(s)	380, 529, 558
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	358, 830
BmuI	ACTGGG	1 cut(s)	225
BpiI	GAAGAC	2 cut(s)	606, 1103
BpmI	CTGGAG	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	333
BsaJI	CCNNGG	3 cut(s)	512, 781, 889
Bse1I	ACTGG	1 cut(s)	220
BseDI	CCNNGG	3 cut(s)	512, 781, 889
BseGI	GGATG	6 cut(s)	261, 271, 373, 436, 670, 1087
BseMII	CTCAG	4 cut(s)	27, 471, 501, 1092
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	3 cut(s)	339, 656, 1118
BseXI	GCAGC	2 cut(s)	746, 865
BseYI	CCCAGC	1 cut(s)	944
Bsh1236I	CGCG	1 cut(s)	574
BshNI	GGYRCC	1 cut(s)	527
BsiHKAI	GWGCWC	2 cut(s)	228, 702
BslFI	GGGAC	2 cut(s)	492, 1046
BsmAI	GTCTC	2 cut(s)	333, 420
BsmFI	GGGAC	2 cut(s)	492, 1046
BsmI	GAATGC	2 cut(s)	10, 748
Bso31I	GGTCTC	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	228, 702
Bsp143I	GATC	3 cut(s)	44, 483, 556
BspCNI	CTCAG	4 cut(s)	28, 472, 500, 1093
BspFNI	CGCG	1 cut(s)	574
BspLI	GGNNCC	3 cut(s)	380, 529, 558
BspMI	ACCTGC	1 cut(s)	482
BspPI	GGATC	3 cut(s)	52, 551, 564
BspQI	GCTCTTC	1 cut(s)	690
BspT107I	GGYRCC	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	3 cut(s)	512, 781, 889
BssMI	GATC	3 cut(s)	44, 483, 556
BssT1I	CCWWGG	3 cut(s)	512, 781, 889
Bst6I	CTCTTC	2 cut(s)	690, 1005
BstBAI	YACGTR	1 cut(s)	275
BstDEI	CTNAG	4 cut(s)	36, 480, 487, 1101
BstF5I	GGATG	6 cut(s)	261, 271, 373, 436, 670, 1087
BstFNI	CGCG	1 cut(s)	574
BstHHI	GCGC	2 cut(s)	10, 412
BstKTI	GATC	3 cut(s)	47, 486, 559
BstMAI	GTCTC	2 cut(s)	333, 420
BstMBI	GATC	3 cut(s)	44, 483, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	743
BstNSI	RCATGY	2 cut(s)	507, 1114
BstUI	CGCG	1 cut(s)	574
BstV1I	GCAGC	2 cut(s)	746, 865
BstV2I	GAAGAC	2 cut(s)	606, 1103
BstX2I	RGATCY	2 cut(s)	483, 556
BstYI	RGATCY	2 cut(s)	483, 556
BtsCI	GGATG	6 cut(s)	261, 271, 373, 436, 670, 1087
BveI	ACCTGC	1 cut(s)	482
CfoI	GCGC	2 cut(s)	10, 412
CseI	GACGC	1 cut(s)	580
Csp6I	GTAC	1 cut(s)	902
CviAII	CATG	6 cut(s)	172, 504, 532, 704, 937, 1111
CviQI	GTAC	1 cut(s)	902
DdeI	CTNAG	4 cut(s)	36, 480, 487, 1101
DpnI	GATC	3 cut(s)	46, 485, 558
DpnII	GATC	3 cut(s)	44, 483, 556
Eam1104I	CTCTTC	2 cut(s)	690, 1005
EarI	CTCTTC	2 cut(s)	690, 1005
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	3 cut(s)	512, 781, 889
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	549
EcoT14I	CCWWGG	3 cut(s)	512, 781, 889
EcoT22I	ATGCAT	2 cut(s)	150, 162
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	3 cut(s)	512, 781, 889
FaeI	CATG	6 cut(s)	175, 507, 535, 707, 940, 1114
FaqI	GGGAC	2 cut(s)	492, 1046
FatI	CATG	6 cut(s)	171, 503, 531, 703, 936, 1110
FauNDI	CATATG	1 cut(s)	1005
Fnu4HI	GCNGC	2 cut(s)	735, 879
FokI	GGATG	6 cut(s)	268, 278, 380, 443, 677, 1094
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	735, 879
FspBI	CTAG	3 cut(s)	90, 837, 1115
FspI	TGCGCA	1 cut(s)	9
GlaI	GCGC	2 cut(s)	9, 411
GluI	GCNGC	2 cut(s)	735, 879
GsaI	CCCAGC	1 cut(s)	948
GsuI	CTGGAG	1 cut(s)	49
HgaI	GACGC	1 cut(s)	580
HhaI	GCGC	2 cut(s)	10, 412
Hin1II	CATG	6 cut(s)	175, 507, 535, 707, 940, 1114
Hin6I	GCGC	2 cut(s)	8, 410
HinP1I	GCGC	2 cut(s)	8, 410
HindIII	AAGCTT	1 cut(s)	1075
HinfI	GANTC	1 cut(s)	689
HphI	GGTGA	3 cut(s)	506, 823, 1027
Hpy166II	GTNNAC	2 cut(s)	244, 831
Hpy188I	TCNGA	3 cut(s)	255, 394, 694
Hpy188III	TCNNGA	5 cut(s)	479, 554, 596, 613, 837
Hpy8I	GTNNAC	2 cut(s)	244, 831
HpyAV	CCTTC	4 cut(s)	34, 712, 763, 1005
HpyCH4IV	ACGT	3 cut(s)	274, 471, 900
HpyCH4V	TGCA	6 cut(s)	53, 148, 160, 302, 881, 992
HpyF10VI	GCNNNNNNNGC	1 cut(s)	743
HpyF3I	CTNAG	4 cut(s)	36, 480, 487, 1101
HpySE526I	ACGT	3 cut(s)	274, 471, 900
Hsp92II	CATG	6 cut(s)	175, 507, 535, 707, 940, 1114
HspAI	GCGC	2 cut(s)	8, 410
Kzo9I	GATC	3 cut(s)	44, 483, 556
LguI	GCTCTTC	1 cut(s)	690
LmnI	GCTCC	2 cut(s)	177, 481
Lsp1109I	GCAGC	2 cut(s)	746, 865
LweI	GCATC	2 cut(s)	358, 830
MaeI	CTAG	3 cut(s)	90, 837, 1115
MaeII	ACGT	3 cut(s)	274, 471, 900
MaeIII	GTNAC	3 cut(s)	211, 627, 706
MalI	GATC	3 cut(s)	46, 485, 558
MboI	GATC	3 cut(s)	44, 483, 556
MboII	GAAGA	8 cut(s)	611, 662, 707, 734, 884, 919, 992, 1108
MflI	RGATCY	2 cut(s)	483, 556
MhlI	GDGCHC	2 cut(s)	228, 702
MluI	ACGCGT	1 cut(s)	572
MmeI	TCCRAC	2 cut(s)	233, 310
Mph1103I	ATGCAT	2 cut(s)	150, 162
MseI	TTAA	6 cut(s)	297, 384, 684, 755, 813, 963
Mva1269I	GAATGC	2 cut(s)	10, 748
MvnI	CGCG	1 cut(s)	574
MwoI	GCNNNNNNNGC	1 cut(s)	743
NdeI	CATATG	1 cut(s)	1005
NdeII	GATC	3 cut(s)	44, 483, 556
NlaIII	CATG	6 cut(s)	175, 507, 535, 707, 940, 1114
NlaIV	GGNNCC	3 cut(s)	380, 529, 558
NmuCI	GTSAC	1 cut(s)	627
NsbI	TGCGCA	1 cut(s)	9
NsiI	ATGCAT	2 cut(s)	150, 162
NspI	RCATGY	2 cut(s)	507, 1114
PaqCI	CACCTGC	1 cut(s)	482
PciI	ACATGT	1 cut(s)	503
PciSI	GCTCTTC	1 cut(s)	690
PctI	GAATGC	2 cut(s)	10, 748
PfeI	GAWTC	1 cut(s)	689
PkrI	GCNGC	2 cut(s)	736, 880
Ppu21I	YACGTR	1 cut(s)	275
PscI	ACATGT	1 cut(s)	503
PshBI	ATTAAT	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	228
PspFI	CCCAGC	1 cut(s)	944
PspN4I	GGNNCC	3 cut(s)	380, 529, 558
PsuI	RGATCY	2 cut(s)	483, 556
RsaI	GTAC	1 cut(s)	903
RsaNI	GTAC	1 cut(s)	902
SacI	GAGCTC	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	690
SaqAI	TTAA	6 cut(s)	297, 384, 684, 755, 813, 963
SatI	GCNGC	2 cut(s)	735, 879
Sau3AI	GATC	3 cut(s)	44, 483, 556
SduI	GDGCHC	2 cut(s)	228, 702
SfaNI	GCATC	2 cut(s)	358, 830
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SspMI	CTAG	3 cut(s)	90, 837, 1115
SstI	GAGCTC	1 cut(s)	228
StyI	CCWWGG	3 cut(s)	512, 781, 889
TaiI	ACGT	3 cut(s)	277, 474, 903
TaqI	TCGA	2 cut(s)	547, 767
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	6 cut(s)	297, 384, 684, 755, 813, 963
Tru9I	TTAA	6 cut(s)	297, 384, 684, 755, 813, 963
TseFI	GTSAC	1 cut(s)	627
TseI	GCWGC	2 cut(s)	734, 878
Tsp45I	GTSAC	1 cut(s)	627
TspDTI	ATGAA	7 cut(s)	17, 282, 548, 755, 851, 953, 992
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	5 cut(s)	355, 497, 549, 591, 787
XbaI	TCTAGA	1 cut(s)	836
XceI	RCATGY	2 cut(s)	507, 1114
XspI	CTAG	3 cut(s)	90, 837, 1115
Zsp2I	ATGCAT	2 cut(s)	150, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.