Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004420

Physical Location & Seq

Genomic Coordinates Forward (+)

28892983 .. 28896066

Gene Structure 3084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0257400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCCTTTGACTATGAGAGCGGCGGCGGCAGCGGCGGCGGGGCCCACTCGCGGCTTGAGACGGCTGTTCTCGACTGGCTTCGTTCCTCCGATGAACTCTCCGCCGCCTAATCCTCGAGTAGAGGCCGAACCGAGCACCAACCTCTTCGTCTCCGGGCTTAACAAGCGTACTACCTCAGAAGGACTACATAAAGCCTTTTCTGCGTTTGGTGAAGTAGTTCAAGCTCGAGTGGTGACTGATCGGGTATCAGGATTCTCCAAGGGATTTGGTTTTGTAAGGTATTCAACCTTAGAAGATGCTGCCAAAGGCAAACAAGGCATGGATGGACAGTTTCTGGATGGTTGGGTTATATTTGCTGAATATGCAAGGCCCAGAACAACTACACCACCTCCTGAGAACAATTCGACTCAGTATGGCCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

141

Amino Acids

15.29

Weight (kDa)

10.07

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	48 - 114	7.8e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26980 AT2G26980 AT2G26980 AT2G26980 AT5G21326
fragaria_vesca	FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610
malus_domestica	MD03G1163600.v1.1
prunus_persica	Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050061
rosa_laevigata	RLG00000034683
rosa_multiflora	Rmu_sc0000333.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031070
rosa_rugosa	Rorug05G0257000 Rorug05G0257100 Rorug05G0257200.1 Rorug05G0257300 Rorug05G0257400
rosa_samantha	Rh5AG330200 Rh5BG340900 Rh5CG367500 Rh5DG353700
rosa_wichuraiana	Rw5G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	1 cut(s)	51
AciI	CCGC	9 cut(s)	20, 23, 26, 32, 35, 38, 51, 101, 104
AcoI	YGGCCR	1 cut(s)	415
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	221, 285
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	2 cut(s)	52, 154
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	2 cut(s)	114, 225
AoxI	GGCC	4 cut(s)	41, 123, 368, 415
ApaI	GGGCCC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	29, 299
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	3 cut(s)	41, 42, 369
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	221, 244
AvaI	CYCGRG	2 cut(s)	114, 225
BaeGI	GKGCMC	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	41, 286
BccI	CCATC	2 cut(s)	317, 332
BceAI	ACGGC	2 cut(s)	77, 402
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	52, 154
BisI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 104, 300
BlsI	GCNGC	9 cut(s)	22, 25, 28, 31, 34, 37, 53, 105, 301
Bme1390I	CCNGG	1 cut(s)	154
BmeT110I	CYCGRG	2 cut(s)	114, 225
BmgT120I	GGNCC	3 cut(s)	41, 42, 369
BmiI	GGNNCC	2 cut(s)	42, 43
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	2 cut(s)	328, 343
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	3 cut(s)	189, 384, 422
BseNI	ACTGG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	41, 286
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	4 cut(s)	43, 125, 370, 417
BsiHKAI	GWGCWC	1 cut(s)	137
BsiHKCI	CYCGRG	2 cut(s)	114, 225
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	2 cut(s)	52, 154
BsmBI	CGTCTC	2 cut(s)	52, 154
BsnI	GGCC	4 cut(s)	43, 125, 370, 417
BsoBI	CYCGRG	2 cut(s)	114, 225
Bsp120I	GGGCCC	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	45, 137
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	9 cut(s)	20, 23, 26, 32, 35, 38, 51, 101, 104
BspANI	GGCC	4 cut(s)	43, 125, 370, 417
BspCNI	CTCAG	3 cut(s)	188, 385, 421
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	42, 43
BsrBI	CCGCTC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	238
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	149
BstDEI	CTNAG	4 cut(s)	175, 289, 393, 408
BstF5I	GGATG	2 cut(s)	328, 343
BstFNI	CGCG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	2 cut(s)	52, 154
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	8 cut(s)	26, 29, 32, 35, 163, 200, 315, 362
BstSCI	CCNGG	1 cut(s)	152
BstSLI	GKGCMC	1 cut(s)	45
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	41, 286
BsuRI	GGCC	4 cut(s)	43, 125, 370, 417
BtsCI	GGATG	2 cut(s)	328, 343
CaiI	CAGNNNCTG	1 cut(s)	334
Cfr13I	GGNCC	3 cut(s)	41, 42, 369
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	1 cut(s)	319
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	4 cut(s)	175, 289, 393, 408
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
EciI	GGCGGA	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	45
Eco88I	CYCGRG	2 cut(s)	114, 225
EcoO109I	RGGNCCY	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	2 cut(s)	52, 154
FaeI	CATG	1 cut(s)	322
FaiI	YATR	6 cut(s)	14, 189, 320, 350, 363, 414
FatI	CATG	1 cut(s)	318
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 104, 300
FokI	GGATG	2 cut(s)	335, 350
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 104, 300
GluI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 104, 300
HaeIII	GGCC	4 cut(s)	43, 125, 370, 417
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	1 cut(s)	322
HinfI	GANTC	2 cut(s)	252, 406
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	221, 244
Hpy188I	TCNGA	2 cut(s)	90, 178
Hpy188III	TCNNGA	4 cut(s)	70, 249, 335, 392
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	8 cut(s)	26, 29, 32, 35, 163, 200, 315, 362
HpyF3I	CTNAG	4 cut(s)	175, 289, 393, 408
Hsp92II	CATG	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	6 cut(s)	60, 166, 234, 320, 385, 405
Lsp1109I	GCAGC	2 cut(s)	41, 286
LweI	GCATC	1 cut(s)	286
MaeIII	GTNAC	2 cut(s)	232, 419
MalI	GATC	1 cut(s)	240
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	1 cut(s)	238
MboII	GAAGA	2 cut(s)	136, 305
MhlI	GDGCHC	2 cut(s)	45, 137
MluCI	AATT	1 cut(s)	400
MlyI	GAGTC	1 cut(s)	400
MnlI	CCTC	6 cut(s)	96, 115, 123, 152, 184, 399
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	154
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	8 cut(s)	26, 29, 32, 35, 163, 200, 315, 362
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	2 cut(s)	42, 43
NmuCI	GTSAC	1 cut(s)	232
PaeR7I	CTCGAG	2 cut(s)	114, 225
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	9 cut(s)	22, 25, 28, 31, 34, 37, 53, 105, 301
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	42, 43
PspOMI	GGGCCC	1 cut(s)	41
PspPI	GGNCC	3 cut(s)	41, 42, 369
PspXI	VCTCGAGB	2 cut(s)	114, 225
PstNI	CAGNNNCTG	1 cut(s)	334
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 104, 300
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	3 cut(s)	41, 42, 369
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	2 cut(s)	45, 137
SetI	ASST	6 cut(s)	144, 176, 226, 281, 290, 391
SfaNI	GCATC	1 cut(s)	286
Sfr274I	CTCGAG	2 cut(s)	114, 225
SlaI	CTCGAG	2 cut(s)	114, 225
SmlI	CTYRAG	3 cut(s)	55, 114, 225
SmoI	CTYRAG	3 cut(s)	55, 114, 225
Sse9I	AATT	1 cut(s)	400
SsiI	CCGC	9 cut(s)	20, 23, 26, 32, 35, 38, 51, 101, 104
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	330
TaqI	TCGA	4 cut(s)	71, 115, 226, 404
TasI	AATT	1 cut(s)	400
TauI	GCSGC	7 cut(s)	23, 26, 29, 35, 38, 54, 106
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	2 cut(s)	29, 299
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	107
XhoI	CTCGAG	2 cut(s)	114, 225
XmnI	GAANNNNTTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.