Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004420

Physical Location & Seq

Genomic Coordinates Reverse (-)

28876223 .. 28880687

Gene Structure 4465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0257100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAAACGAGGCTACTCAGAATCGTCCTCCACCTCTGTTGGGCCTCCTCAATCGAGGTTCAAAGCCAACCCAGAAGAGGATTCAAATTTCTTGGAGGATGAAAGCACAAAGATATTTGCACGTAAAGTGGCCGATCATTATAGTGCAAGGACAAATCAAACTCTGGAAGAACGAGAAGCTAGTCCGATCATCCATTTAAAAAAGCTAAACAACTGGATTAAGAGTGTACTAATTCAGCTCTATGCTCGCCGAGGAGATGCTGTTCTTGATCTTGCATGCGGAAAGGGAGGTGATCTCATCAAATGGGACAAGGCCAAAATTGGGTACTATGTTGGCATTGATATTGCTGAAGGCTCTATAGAAGATTGTCGTACCCGTTACAATGGTGATGCTGATCATCATCAACGCCGTAAAAAGTTTACATTTCCTGCACGCCTTATCTGTGGAGACTGCTATGAGGTTCGACTGGATAAAGCCCTAGCCGATGATGCACCCTTTGATATTTGTAGTTGCCAGTTTGCCTTGCATTATTCCTGGTCCACTGAAGCACGAGCACGGAGAGCCTTGGCTAATGTTTCAGCCTTACTTCGCCCAGGCGGAACTTTCATTGGAACAATGCCAGACGCTAATGTGATTATCAAAAAGCTGAGAGAAGCTGAAGGCTTATTCTTTGGAAATAGTGTGTACTGGATACGATTTGATGAAGAATTTTCTGAAAAGAAATTTAAGTCTTCAAGCCCCTTTGGTATCAAGTACAAGTTTCATCTGGAGGATGCTGTTGATTGCCCTGAATGGATCGTCCCCTTTCATGTATTCAAATCATTGGTAGAAGAGTACGATATGGAGTTAATTTTTGTGAAGAACTCTCATGAATTTGTGCACGAGTATATGAAAAGACCAGAGTACGTCGAGTTAATGCGGAGGCTTGGTGCATTAGGTGACGGTAACCAAGATCAGAGTACACTATCACAAGATGAATGGGAAGTAGCCTATTTGTACTTGTCATTTGTCTTGAGGAAGCGGGGCCAACCTGATCGAACTCAAACAAATAGTAGAAGAGATAAAGGGAAGATGCATATATCAAAAGAGGACATATTGAACATTGAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

370

Amino Acids

42.67

Weight (kDa)

6.62

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	32 - 341	3.3e-129	mRNA (guanine-N(7))-methyltransferase domain
Methyltransf_31	PF13847	84 - 209	9.4e-09	Methyltransferase domain
Methyltransf_25	PF13649	88 - 200	1.6e-10	Methyltransferase domain
Methyltransf_12	PF08242	89 - 202	9.2e-10	Methyltransferase domain
Methyltransf_11	PF08241	89 - 203	2.6e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26980 AT2G26980 AT2G26980 AT2G26980 AT5G21326
fragaria_vesca	FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610 FvH4_3g27610
malus_domestica	MD03G1163600.v1.1
prunus_persica	Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1 Prupe.6G156900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050061
rosa_laevigata	RLG00000034683
rosa_multiflora	Rmu_sc0000333.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031070
rosa_rugosa	Rorug05G0257000 Rorug05G0257100 Rorug05G0257200.1 Rorug05G0257300 Rorug05G0257400
rosa_samantha	Rh5AG330200 Rh5BG340900 Rh5CG367500 Rh5DG353700
rosa_wichuraiana	Rw5G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	279, 597, 919, 1021
AclWI	GGATC	1 cut(s)	803
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	4 cut(s)	85, 707, 722, 872
AcuI	CTGAAG	3 cut(s)	369, 564, 678
AfaI	GTAC	9 cut(s)	228, 326, 373, 686, 755, 836, 905, 961, 998
AfiI	CCNNNNNNNGG	3 cut(s)	39, 76, 321
AgsI	TTSAA	6 cut(s)	61, 84, 735, 817, 1099, 1106
AjnI	CCWGG	2 cut(s)	533, 592
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	5 cut(s)	179, 205, 238, 646, 656
AluI	AGCT	5 cut(s)	179, 205, 238, 646, 656
Alw21I	GWGCWC	2 cut(s)	556, 882
Alw26I	GTCTC	1 cut(s)	441
Alw44I	GTGCAC	1 cut(s)	878
AlwI	GGATC	1 cut(s)	803
AoxI	GGCC	4 cut(s)	41, 129, 312, 1024
ApaLI	GTGCAC	1 cut(s)	878
ApoI	RAATTY	4 cut(s)	85, 707, 722, 872
AspS9I	GGNCC	3 cut(s)	41, 537, 1024
AsuHPI	GGTGA	3 cut(s)	302, 398, 950
AvaII	GGWCC	1 cut(s)	537
BaeGI	GKGCMC	1 cut(s)	882
BauI	CACGAG	2 cut(s)	549, 881
BbsI	GAAGAC	1 cut(s)	723
Bbv12I	GWGCWC	2 cut(s)	556, 882
BceAI	ACGGC	1 cut(s)	393
BciT130I	CCWGG	2 cut(s)	535, 594
BciVI	GTATCC	1 cut(s)	684
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	2 cut(s)	180, 479
BfmI	CTRYAG	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	684
Bme1390I	CCNGG	2 cut(s)	535, 594
Bme18I	GGWCC	1 cut(s)	537
BmgT120I	GGNCC	3 cut(s)	41, 537, 1024
BmiI	GGNNCC	1 cut(s)	1025
BmrFI	CCNGG	2 cut(s)	535, 594
BmsI	GCATC	5 cut(s)	247, 379, 478, 763, 1062
BpiI	GAAGAC	1 cut(s)	723
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpmI	CTGGAG	1 cut(s)	788
BpuEI	CTTGAG	1 cut(s)	1033
BsaAI	YACGTR	1 cut(s)	122
BsaBI	GATNNNNATC	2 cut(s)	393, 399
BsaJI	CCNNGG	3 cut(s)	250, 564, 592
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 913, 943
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 76, 321
Bse1I	ACTGG	4 cut(s)	218, 471, 514, 692
Bse8I	GATNNNNATC	2 cut(s)	393, 399
BseBI	CCWGG	2 cut(s)	535, 594
BseDI	CCNNGG	3 cut(s)	250, 564, 592
BseGI	GGATG	3 cut(s)	103, 189, 778
BseJI	GATNNNNATC	2 cut(s)	393, 399
BseLI	CCNNNNNNNGG	3 cut(s)	39, 76, 321
BseMII	CTCAG	2 cut(s)	30, 638
BseNI	ACTGG	4 cut(s)	218, 471, 514, 692
BseRI	GAGGAG	2 cut(s)	36, 267
BseSI	GKGCMC	1 cut(s)	882
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	4 cut(s)	43, 131, 314, 1026
BsiHKAI	GWGCWC	2 cut(s)	556, 882
BslFI	GGGAC	2 cut(s)	320, 785
BslI	CCNNNNNNNGG	3 cut(s)	39, 76, 321
BsmAI	GTCTC	1 cut(s)	441
BsmFI	GGGAC	2 cut(s)	320, 785
BsnI	GGCC	4 cut(s)	43, 131, 314, 1026
Bsp1286I	GDGCHC	2 cut(s)	556, 882
Bsp143I	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
BspACI	CCGC	4 cut(s)	279, 597, 919, 1021
BspANI	GGCC	4 cut(s)	43, 131, 314, 1026
BspCNI	CTCAG	2 cut(s)	29, 639
BspHI	TCATGA	1 cut(s)	868
BspLI	GGNNCC	1 cut(s)	1025
BspPI	GGATC	1 cut(s)	803
BsrI	ACTGG	4 cut(s)	218, 471, 514, 692
BssECI	CCNNGG	3 cut(s)	250, 564, 592
BssMI	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
BssSI	CACGAG	2 cut(s)	549, 881
BssT1I	CCWWGG	1 cut(s)	564
Bst2BI	CACGAG	2 cut(s)	549, 881
Bst2UI	CCWGG	2 cut(s)	535, 594
Bst4CI	ACNGT	1 cut(s)	944
Bst6I	CTCTTC	3 cut(s)	69, 825, 1051
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	247, 277, 433
BstDEI	CTNAG	2 cut(s)	16, 647
BstEII	GGTNACC	1 cut(s)	944
BstF5I	GGATG	3 cut(s)	103, 189, 778
BstKTI	GATC	8 cut(s)	136, 189, 271, 295, 397, 798, 955, 1036
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 560
BstNI	CCWGG	2 cut(s)	535, 594
BstNSI	RCATGY	1 cut(s)	279
BstPI	GGTNACC	1 cut(s)	944
BstSCI	CCNGG	2 cut(s)	533, 592
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	882
BstV2I	GAAGAC	1 cut(s)	723
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	4 cut(s)	43, 131, 314, 1026
BtsCI	GGATG	3 cut(s)	103, 189, 778
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	3 cut(s)	247, 277, 433
CciI	TCATGA	1 cut(s)	868
Cfr13I	GGNCC	3 cut(s)	41, 537, 1024
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	9 cut(s)	227, 325, 372, 685, 754, 835, 904, 960, 997
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviAII	CATG	3 cut(s)	276, 809, 869
CviQI	GTAC	9 cut(s)	227, 325, 372, 685, 754, 835, 904, 960, 997
DdeI	CTNAG	2 cut(s)	16, 647
DpnI	GATC	8 cut(s)	135, 188, 270, 294, 396, 797, 954, 1035
DpnII	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
DraI	TTTAAA	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	3 cut(s)	69, 825, 1051
EarI	CTCTTC	3 cut(s)	69, 825, 1051
EciI	GGCGGA	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	537
Eco57I	CTGAAG	3 cut(s)	369, 564, 678
Eco91I	GGTNACC	1 cut(s)	944
EcoO65I	GGTNACC	1 cut(s)	944
EcoRII	CCWGG	2 cut(s)	533, 592
EcoT14I	CCWWGG	1 cut(s)	564
EcoT22I	ATGCAT	1 cut(s)	1077
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	3 cut(s)	279, 812, 872
FaqI	GGGAC	2 cut(s)	320, 785
FatI	CATG	3 cut(s)	275, 808, 868
FauI	CCCGC	1 cut(s)	1014
FbaI	TGATCA	1 cut(s)	394
FokI	GGATG	3 cut(s)	110, 176, 785
FspBI	CTAG	2 cut(s)	180, 479
GsuI	CTGGAG	1 cut(s)	788
HaeIII	GGCC	4 cut(s)	43, 131, 314, 1026
HgaI	GACGC	1 cut(s)	632
Hin1II	CATG	3 cut(s)	279, 812, 872
HinfI	GANTC	2 cut(s)	20, 80
HphI	GGTGA	3 cut(s)	302, 398, 950
Hpy166II	GTNNAC	6 cut(s)	227, 420, 540, 685, 880, 962
Hpy188I	TCNGA	4 cut(s)	19, 186, 715, 957
Hpy188III	TCNNGA	5 cut(s)	164, 266, 767, 869, 1012
Hpy8I	GTNNAC	6 cut(s)	227, 420, 540, 685, 880, 962
Hpy99I	CGWCG	1 cut(s)	911
HpyAV	CCTTC	2 cut(s)	344, 653
HpyCH4III	ACNGT	1 cut(s)	944
HpyCH4IV	ACGT	2 cut(s)	121, 906
HpyCH4V	TGCA	9 cut(s)	119, 146, 275, 431, 491, 526, 880, 932, 1075
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 560
HpyF3I	CTNAG	2 cut(s)	16, 647
HpySE526I	ACGT	2 cut(s)	121, 906
Hsp92II	CATG	3 cut(s)	279, 812, 872
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
LweI	GCATC	5 cut(s)	247, 379, 478, 763, 1062
MaeI	CTAG	2 cut(s)	180, 479
MaeII	ACGT	2 cut(s)	121, 906
MaeIII	GTNAC	3 cut(s)	377, 938, 944
MalI	GATC	8 cut(s)	135, 188, 270, 294, 396, 797, 954, 1035
MboI	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
MboII	GAAGA	9 cut(s)	86, 179, 374, 716, 723, 842, 871, 1068, 1081
MhlI	GDGCHC	2 cut(s)	556, 882
MluCI	AATT	7 cut(s)	85, 231, 318, 707, 722, 849, 872
Mph1103I	ATGCAT	1 cut(s)	1077
MseI	TTAA	5 cut(s)	197, 219, 726, 848, 914
MslI	CAYNNNNRTG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	535, 594
MvaI	CCWGG	2 cut(s)	535, 594
MwoI	GCNNNNNNNGC	2 cut(s)	488, 560
NdeII	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
NlaIII	CATG	3 cut(s)	279, 812, 872
NlaIV	GGNNCC	1 cut(s)	1025
NmeAIII	GCCGAG	1 cut(s)	275
NmuCI	GTSAC	1 cut(s)	938
NsiI	ATGCAT	1 cut(s)	1077
NspI	RCATGY	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	279
PagI	TCATGA	1 cut(s)	868
PfeI	GAWTC	2 cut(s)	20, 80
Ppu21I	YACGTR	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	533, 592
PspEI	GGTNACC	1 cut(s)	944
PspGI	CCWGG	2 cut(s)	533, 592
PspN4I	GGNNCC	1 cut(s)	1025
PspPI	GGNCC	3 cut(s)	41, 537, 1024
RsaI	GTAC	9 cut(s)	228, 326, 373, 686, 755, 836, 905, 961, 998
RsaNI	GTAC	9 cut(s)	227, 325, 372, 685, 754, 835, 904, 960, 997
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	5 cut(s)	197, 219, 726, 848, 914
Sau3AI	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
Sau96I	GGNCC	3 cut(s)	41, 537, 1024
ScrFI	CCNGG	2 cut(s)	535, 594
SduI	GDGCHC	2 cut(s)	556, 882
SfaNI	GCATC	5 cut(s)	247, 379, 478, 763, 1062
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	1012
SmoI	CTYRAG	1 cut(s)	1012
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	7 cut(s)	85, 231, 318, 707, 722, 849, 872
SsiI	CCGC	4 cut(s)	279, 597, 919, 1021
SspMI	CTAG	2 cut(s)	180, 479
StyD4I	CCNGG	2 cut(s)	533, 592
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	944
TaiI	ACGT	2 cut(s)	124, 909
TaqI	TCGA	4 cut(s)	53, 463, 909, 1036
TasI	AATT	7 cut(s)	85, 231, 318, 707, 722, 849, 872
TatI	WGTACW	5 cut(s)	226, 684, 753, 959, 996
TfiI	GAWTC	2 cut(s)	20, 80
Tru1I	TTAA	5 cut(s)	197, 219, 726, 848, 914
Tru9I	TTAA	5 cut(s)	197, 219, 726, 848, 914
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	1 cut(s)	938
Tsp45I	GTSAC	1 cut(s)	938
TspDTI	ATGAA	9 cut(s)	17, 114, 595, 717, 752, 797, 885, 905, 990
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	1 cut(s)	547
VneI	GTGCAC	1 cut(s)	878
VpaK11BI	GGWCC	1 cut(s)	537
XapI	RAATTY	4 cut(s)	85, 707, 722, 872
XceI	RCATGY	1 cut(s)	279
XspI	CTAG	2 cut(s)	180, 479
Zsp2I	ATGCAT	1 cut(s)	1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.