RLG00000036865

Protein NRT1 PTR FAMILY 7.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005709
Physical Location & Seq
Forward (+)
85936327 .. 85938766
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036865

Sequence Viewer

Length: 2034 bp
ATGACAGGAAACAACAACAAAGATGTTGCAGAATCATCAGAAGTTCCGAATAGAAGCTCTAATGACATTGAACAGAAGAGAAACTCGCACGAAAACAAACAGCAGAGTAATATTCATGAAATTCAATTGAAGAAACACTCTCATGATGGTACTGAAGAGAAAAGGGACTCACATGATACTGAAGAGAATAGGAACTCTCACGGTACTGAAGAGAAAACCAACTCCAACTCTCATGATATTGAAGAGAAGACCAACTCTCATGAAAATGAAGGGAAGTTCGACTCCCATGACGGTGATGAACCACCTGAGAAAGGGACAATCACTACTAGAAGTCCCAATGCACCAAGCCCTATTAGAAAGAGAAGAGGAGGATGGAAACTTGCAATTCTCTTGCTAGCAAACCAAGGCCTAGCAACACTAGCTTTCTTCGGTGTTGGTGTGAACTTGGTTTTGTTTCTAGTCAGAGTTCTTGAACAATCAAATGCCGTAGCGGCCAACAATGTTAGCAAGTGGACTGGAACAGTTTATCTGTTCTCTCTGGTTGGAGCTTTCCTCAGCGATTCCTATTGGGGCCGTTACTTAACCTGTGCCGTCTTTCAGGTCTTCTTTGTAATGGGCTTGGGGCTAATGTCACTTACATCTTGGCTCTTTCTGATCCATCCATCTGGTTGCGGCGATGGAGAAAAACTTTGCAATCCCCCATCCAAAGCTGGTGTTATTCTTTTTTACCTATCAATATATTTAGTGGCATTTGGATATGGTGGTCACCAACCTACTATAGCAACATTTGGAGCGGACCAATTTGATGAGGCAGATCCTGAACAGCAAAGTTCCAGAGCAGTTTTCTTCTCTTATTTCTACTTTGCACTCAACGTGGGGTGTCTCTTCTCAAACACCATCTTAGTTTATTATGAGGATCATGGATATTGGAATATAGGGTTTCTGGTCTCATTAGGGTCAGCAGTCATAGCCCTATTGTCCTATTTGATGGGATCAAGTCGGTATCGGTATATAAAACCATGTGGCAACCCTTTACCTCGTGTTGCTCAGGTATTTGTGGCTGCTGCTAGAAAATGGCATGTTGTTCCAGCTGATCCAGATAATCTGTATGAGATGGAAGGAAAAGAATCTGCAATCAAAGGGAGTAGAAAGATTTTTCACAGTAATGAAATTGAGTTTTTGGACAAGGCAGCAACGATAACGGACAGGGATCAAAATGAGAAAAACCCTTGGAGGCTTTGTACTGTAACCCAAGTCGAAGAAGCCAAATGCGTCCTGAAACTTCTACCTATTTGGCTTTGCACTATTATTTACTCGGTGATCTTCACACAAATGGCTTCTCTATTCGTAGAGCAAGGTGATGTGATGCATGCCCAAATCGGAAATTTTCATATCCCAGCTGCTAGCATGTCAGCTTTTGATATATGCAGCGTTCTAATCTCCACCGGAATTTACCGCCAAGTCCTTGTGCCTTTAGCTGGAAGATTAAGTGGAAACCCTAAAGGGTTATCAGAGCTTCAGAGAATGGGAATTGGACTAATTATTGGAATGTTAGCAATGGTTGCAGCTGGTGCCACGGAGATTGCAAGGCTCCAATATGTGGAGCCGGGTAAGAAAGTAAGCTCTTTGAGCATATTTTGGCAAATTCCACAATATGTTTTTGTTGGTGTTTCAGAAGTTTTCATGTATGTTGGTCAACTTGAGTTCTTTAATGGAGAAGCCCCAGATGGGATAAAAAGCTTTGGAAGTTCGTTGTGCATGGCTTCAATCTCTCTTGGGAATTATGTGAGCAGTATGCTAGTTGCTATGGTGATGGGGATTACAGCTAGAGGTTCAGACCCAGGTTGGATTCCAAATAATTTGAATGAAGGTCATATGGATAGGTTCTACTTCTTGATTGCAGGACTAACAGTTCTCGACTTTGCTTTTTATTTATATCTTGCTAAGAGGTACAAGTGCATTAACCTTGAAGGCCCTGAGAATGAAGAGGTTAGTCTAGAAAGTCAGGATGATGAGGTGCTCAGAAGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

678

Amino Acids

75.1

Weight (kDa)

5.58

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 195 - 616 7.5e-89 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1571
AccB7I CCANNNNNTGG 1 cut(s) 1600
AccBSI CCGCTC 1 cut(s) 794
AciI CCGC 4 cut(s) 491, 672, 794, 1456
AclWI GGATC 6 cut(s) 649, 809, 924, 1000, 1088, 1218
AcoI YGGCCR 1 cut(s) 492
AcsI RAATTY 4 cut(s) 120, 1384, 1449, 1644
AcuI CTGAAG 4 cut(s) 174, 201, 228, 1502
AfaI GTAC 4 cut(s) 151, 205, 1243, 1952
AfiI CCNNNNNNNGG 4 cut(s) 311, 1478, 1600, 1728
AgsI TTSAA 8 cut(s) 71, 125, 130, 242, 473, 1767, 1864, 1970
AjnI CCWGG 1 cut(s) 1840
AloI GAACNNNNNNTCC 2 cut(s) 1896, 1928
Alw21I GWGCWC 1 cut(s) 2022
Alw26I GTCTC 2 cut(s) 887, 952
AlwI GGATC 6 cut(s) 649, 809, 924, 1000, 1088, 1218
AlwNI CAGNNNCTG 1 cut(s) 818
AoxI GGCC 4 cut(s) 406, 492, 571, 1972
ApeKI GCWGC 6 cut(s) 1061, 1064, 1190, 1400, 1428, 1565
ApoI RAATTY 4 cut(s) 120, 1384, 1449, 1644
AspS9I GGNCC 3 cut(s) 571, 796, 1973
AsuC2I CCSGG 1 cut(s) 1608
AsuHPI GGTGA 5 cut(s) 305, 758, 1330, 1370, 1822
AsuNHI GCTAGC 2 cut(s) 394, 1403
AvaII GGWCC 1 cut(s) 796
BanI GGYRCC 1 cut(s) 1571
BauI CACGAG 1 cut(s) 1038
BbsI GAAGAC 2 cut(s) 254, 595
Bbv12I GWGCWC 1 cut(s) 2022
BbvCI CCTCAGC 1 cut(s) 554
BbvI GCAGC 6 cut(s) 1048, 1051, 1202, 1387, 1440, 1577
BceAI ACGGC 3 cut(s) 470, 558, 575
BciT130I CCWGG 1 cut(s) 1842
BcnI CCSGG 1 cut(s) 1608
BcoDI GTCTC 2 cut(s) 887, 952
BfmI CTRYAG 1 cut(s) 777
BglI GCCNNNNNGGC 1 cut(s) 491
BisI GCNGC 8 cut(s) 492, 673, 1062, 1065, 1191, 1401, 1429, 1566
BlsI GCNGC 8 cut(s) 493, 674, 1063, 1066, 1192, 1402, 1430, 1567
Bme1390I CCNGG 2 cut(s) 1608, 1842
Bme18I GGWCC 1 cut(s) 796
BmgT120I GGNCC 3 cut(s) 571, 796, 1973
BmiI GGNNCC 4 cut(s) 572, 1573, 1592, 1605
BmrFI CCNGG 2 cut(s) 1608, 1842
BmsI GCATC 1 cut(s) 1356
BmtI GCTAGC 2 cut(s) 398, 1407
BpiI GAAGAC 2 cut(s) 254, 595
BplI GAGNNNNNCTC 2 cut(s) 537, 569
Bpu10I CCTNAGC 2 cut(s) 554, 1047
BpuEI CTTGAG 1 cut(s) 1721
BpuMI CCSGG 1 cut(s) 1608
BsaI GGTCTC 1 cut(s) 952
BsaJI CCNNGG 4 cut(s) 403, 1229, 1575, 1840
BsaWI WCCGGW 1 cut(s) 1445
BsaXI ACNNNNNCTCC 2 cut(s) 1225, 1255
Bsc4I CCNNNNNNNGG 4 cut(s) 311, 1478, 1600, 1728
Bse1I ACTGG 1 cut(s) 520
Bse3DI GCAATG 1 cut(s) 1563
BseBI CCWGG 1 cut(s) 1842
BseDI CCNNGG 4 cut(s) 403, 1229, 1575, 1840
BseGI GGATG 4 cut(s) 377, 658, 701, 2014
BseLI CCNNNNNNNGG 4 cut(s) 311, 1478, 1600, 1728
BseMI GCAATG 1 cut(s) 1563
BseMII CTCAG 4 cut(s) 297, 568, 1061, 1968
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 381
BseXI GCAGC 6 cut(s) 1048, 1051, 1202, 1387, 1440, 1577
BseYI CCCAGC 1 cut(s) 1396
BshFI GGCC 4 cut(s) 408, 494, 573, 1974
BshNI GGYRCC 1 cut(s) 1571
BsiHKAI GWGCWC 1 cut(s) 2022
BsiSI CCGG 2 cut(s) 1446, 1607
BslFI GGGAC 3 cut(s) 179, 318, 328
BslI CCNNNNNNNGG 4 cut(s) 311, 1478, 1600, 1728
BsmAI GTCTC 2 cut(s) 887, 952
BsmFI GGGAC 3 cut(s) 179, 318, 328
BsnI GGCC 4 cut(s) 408, 494, 573, 1974
Bso31I GGTCTC 1 cut(s) 952
Bsp1286I GDGCHC 1 cut(s) 2022
Bsp143I GATC 7 cut(s) 654, 814, 916, 992, 1093, 1210, 1320
BspACI CCGC 4 cut(s) 491, 672, 794, 1456
BspANI GGCC 4 cut(s) 408, 494, 573, 1974
BspCNI CTCAG 5 cut(s) 298, 567, 1060, 1969, 2034
BspHI TCATGA 4 cut(s) 115, 142, 232, 259
BspLI GGNNCC 4 cut(s) 572, 1573, 1592, 1605
BspOI GCTAGC 2 cut(s) 398, 1407
BspPI GGATC 6 cut(s) 649, 809, 924, 1000, 1088, 1218
BspT107I GGYRCC 1 cut(s) 1571
BspTNI GGTCTC 1 cut(s) 952
BsrBI CCGCTC 1 cut(s) 794
BsrDI GCAATG 1 cut(s) 1563
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 4 cut(s) 403, 1229, 1575, 1840
BssMI GATC 7 cut(s) 654, 814, 916, 992, 1093, 1210, 1320
BssSI CACGAG 1 cut(s) 1038
BssT1I CCWWGG 2 cut(s) 403, 1229
Bst2BI CACGAG 1 cut(s) 1038
Bst2UI CCWGG 1 cut(s) 1842
Bst4CI ACNGT 6 cut(s) 203, 293, 523, 1163, 1246, 1912
Bst6I CTCTTC 8 cut(s) 71, 150, 177, 204, 237, 358, 890, 1980
BstAPI GCANNNNNTGC 2 cut(s) 1562, 1571
BstC8I GCNNGC 3 cut(s) 396, 1371, 1405
BstDEI CTNAG 7 cut(s) 306, 554, 901, 1047, 1944, 1977, 2021
BstDSI CCRYGG 1 cut(s) 1575
BstEII GGTNACC 1 cut(s) 764
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 4 cut(s) 377, 658, 701, 2014
BstKTI GATC 7 cut(s) 657, 817, 919, 995, 1096, 1213, 1323
BstMAI GTCTC 2 cut(s) 887, 952
BstMBI GATC 7 cut(s) 654, 814, 916, 992, 1093, 1210, 1320
BstMWI GCNNNNNNNGC 6 cut(s) 419, 491, 968, 1562, 1571, 1629
BstNI CCWGG 1 cut(s) 1842
BstNSI RCATGY 3 cut(s) 1082, 1373, 1411
BstPI GGTNACC 1 cut(s) 764
BstSCI CCNGG 2 cut(s) 1606, 1840
BstSFI CTRYAG 1 cut(s) 777
BstV1I GCAGC 6 cut(s) 1048, 1051, 1202, 1387, 1440, 1577
BstV2I GAAGAC 2 cut(s) 254, 595
BstX2I RGATCY 1 cut(s) 814
BstXI CCANNNNNNTGG 1 cut(s) 665
BstYI RGATCY 1 cut(s) 814
BsuRI GGCC 4 cut(s) 408, 494, 573, 1974
BtgI CCRYGG 1 cut(s) 1575
BtgZI GCGATG 1 cut(s) 690
BtsCI GGATG 4 cut(s) 377, 658, 701, 2014
Cac8I GCNNGC 3 cut(s) 396, 1371, 1405
CaiI CAGNNNCTG 1 cut(s) 818
CciI TCATGA 4 cut(s) 115, 142, 232, 259
Cfr13I GGNCC 3 cut(s) 571, 796, 1973
CseI GACGC 1 cut(s) 1261
Csp6I GTAC 4 cut(s) 150, 204, 1242, 1951
CspCI CAANNNNNGTGG 2 cut(s) 1564, 1599
CviQI GTAC 4 cut(s) 150, 204, 1242, 1951
DdeI CTNAG 7 cut(s) 306, 554, 901, 1047, 1944, 1977, 2021
DpnI GATC 7 cut(s) 656, 816, 918, 994, 1095, 1212, 1322
DpnII GATC 7 cut(s) 654, 814, 916, 992, 1093, 1210, 1320
EaeI YGGCCR 1 cut(s) 492
Eam1104I CTCTTC 8 cut(s) 71, 150, 177, 204, 237, 358, 890, 1980
EarI CTCTTC 8 cut(s) 71, 150, 177, 204, 237, 358, 890, 1980
Eco130I CCWWGG 2 cut(s) 403, 1229
Eco147I AGGCCT 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 952
Eco47I GGWCC 1 cut(s) 796
Eco57I CTGAAG 4 cut(s) 174, 201, 228, 1502
Eco91I GGTNACC 1 cut(s) 764
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 1973
EcoO65I GGTNACC 1 cut(s) 764
EcoRII CCWGG 1 cut(s) 1840
EcoT14I CCWWGG 2 cut(s) 403, 1229
EcoT22I ATGCAT 1 cut(s) 1371
ErhI CCWWGG 2 cut(s) 403, 1229
FaqI GGGAC 3 cut(s) 179, 318, 328
FauNDI CATATG 1 cut(s) 1875
Fnu4HI GCNGC 8 cut(s) 492, 673, 1062, 1065, 1191, 1401, 1429, 1566
FokI GGATG 4 cut(s) 384, 645, 688, 2021
Fsp4HI GCNGC 8 cut(s) 492, 673, 1062, 1065, 1191, 1401, 1429, 1566
GluI GCNGC 8 cut(s) 492, 673, 1062, 1065, 1191, 1401, 1429, 1566
GsaI CCCAGC 1 cut(s) 1400
HaeIII GGCC 4 cut(s) 408, 494, 573, 1974
HapII CCGG 2 cut(s) 1446, 1607
HgaI GACGC 1 cut(s) 1261
HincII GTYRAC 1 cut(s) 1697
HindII GTYRAC 1 cut(s) 1697
HindIII AAGCTT 1 cut(s) 1738
HinfI GANTC 6 cut(s) 32, 167, 281, 560, 1127, 1849
HpaII CCGG 2 cut(s) 1446, 1607
HphI GGTGA 5 cut(s) 305, 758, 1330, 1370, 1822
Hpy166II GTNNAC 3 cut(s) 442, 513, 1697
Hpy8I GTNNAC 3 cut(s) 442, 513, 1697
HpyAV CCTTC 4 cut(s) 263, 1112, 1862, 1964
HpyCH4III ACNGT 6 cut(s) 203, 293, 523, 1163, 1246, 1912
HpyCH4IV ACGT 1 cut(s) 873
HpyF10VI GCNNNNNNNGC 6 cut(s) 419, 491, 968, 1562, 1571, 1629
HpyF3I CTNAG 7 cut(s) 306, 554, 901, 1047, 1944, 1977, 2021
HpySE526I ACGT 1 cut(s) 873
Kzo9I GATC 7 cut(s) 654, 814, 916, 992, 1093, 1210, 1320
LmnI GCTCC 4 cut(s) 545, 791, 1596, 1603
Lsp1109I GCAGC 6 cut(s) 1048, 1051, 1202, 1387, 1440, 1577
LweI GCATC 1 cut(s) 1356
MaeII ACGT 1 cut(s) 873
MaeIII GTNAC 4 cut(s) 575, 630, 764, 1246
MalI GATC 7 cut(s) 656, 816, 918, 994, 1095, 1212, 1322
MbiI CCGCTC 1 cut(s) 794
MboI GATC 7 cut(s) 654, 814, 916, 992, 1093, 1210, 1320
MfeI CAATTG 1 cut(s) 125
MflI RGATCY 1 cut(s) 814
MhlI GDGCHC 1 cut(s) 2022
MlyI GAGTC 2 cut(s) 161, 275
MmeI TCCRAC 3 cut(s) 249, 523, 1826
Mph1103I ATGCAT 1 cut(s) 1371
MseI TTAA 4 cut(s) 581, 1487, 1710, 1962
MslI CAYNNNNRTG 5 cut(s) 141, 264, 291, 1164, 1331
MspA1I CMGCKG 3 cut(s) 1091, 1400, 1568
MspI CCGG 2 cut(s) 1446, 1607
MspR9I CCNGG 2 cut(s) 1608, 1842
MunI CAATTG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 1842
MwoI GCNNNNNNNGC 6 cut(s) 419, 491, 968, 1562, 1571, 1629
NciI CCSGG 1 cut(s) 1608
NdeI CATATG 1 cut(s) 1875
NdeII GATC 7 cut(s) 654, 814, 916, 992, 1093, 1210, 1320
NheI GCTAGC 2 cut(s) 394, 1403
NlaIV GGNNCC 4 cut(s) 572, 1573, 1592, 1605
NmuCI GTSAC 2 cut(s) 630, 764
NsiI ATGCAT 1 cut(s) 1371
NspI RCATGY 3 cut(s) 1082, 1373, 1411
PaeI GCATGC 1 cut(s) 1373
PagI TCATGA 4 cut(s) 115, 142, 232, 259
PceI AGGCCT 1 cut(s) 408
PfeI GAWTC 4 cut(s) 32, 560, 1127, 1849
PflMI CCANNNNNTGG 1 cut(s) 1600
PkrI GCNGC 8 cut(s) 493, 674, 1063, 1066, 1192, 1402, 1430, 1567
PleI GAGTC 2 cut(s) 161, 275
PpsI GAGTC 2 cut(s) 161, 275
Psp6I CCWGG 1 cut(s) 1840
PspEI GGTNACC 1 cut(s) 764
PspFI CCCAGC 1 cut(s) 1396
PspGI CCWGG 1 cut(s) 1840
PspN4I GGNNCC 4 cut(s) 572, 1573, 1592, 1605
PspPI GGNCC 3 cut(s) 571, 796, 1973
PstNI CAGNNNCTG 1 cut(s) 818
PsuI RGATCY 1 cut(s) 814
PvuII CAGCTG 3 cut(s) 1091, 1400, 1568
RsaI GTAC 4 cut(s) 151, 205, 1243, 1952
RsaNI GTAC 4 cut(s) 150, 204, 1242, 1951
RseI CAYNNNNRTG 5 cut(s) 141, 264, 291, 1164, 1331
SaqAI TTAA 4 cut(s) 581, 1487, 1710, 1962
SatI GCNGC 8 cut(s) 492, 673, 1062, 1065, 1191, 1401, 1429, 1566
Sau3AI GATC 7 cut(s) 654, 814, 916, 992, 1093, 1210, 1320
Sau96I GGNCC 3 cut(s) 571, 796, 1973
SchI GAGTC 2 cut(s) 161, 275
ScrFI CCNGG 2 cut(s) 1608, 1842
SduI GDGCHC 1 cut(s) 2022
SfaNI GCATC 1 cut(s) 1356
SfcI CTRYAG 1 cut(s) 777
SinI GGWCC 1 cut(s) 796
SmiMI CAYNNNNRTG 5 cut(s) 141, 264, 291, 1164, 1331
SmlI CTYRAG 1 cut(s) 1700
SmoI CTYRAG 1 cut(s) 1700
SphI GCATGC 1 cut(s) 1373
SseBI AGGCCT 1 cut(s) 408
SsiI CCGC 4 cut(s) 491, 672, 794, 1456
SspI AATATT 1 cut(s) 112
StuI AGGCCT 1 cut(s) 408
StyD4I CCNGG 2 cut(s) 1606, 1840
StyI CCWWGG 2 cut(s) 403, 1229
TaaI ACNGT 6 cut(s) 203, 293, 523, 1163, 1246, 1912
TaiI ACGT 1 cut(s) 876
TaqI TCGA 3 cut(s) 279, 1257, 1917
TatI WGTACW 1 cut(s) 1241
TauI GCSGC 2 cut(s) 494, 675
TfiI GAWTC 4 cut(s) 32, 560, 1127, 1849
Tru1I TTAA 4 cut(s) 581, 1487, 1710, 1962
Tru9I TTAA 4 cut(s) 581, 1487, 1710, 1962
TseFI GTSAC 2 cut(s) 630, 764
TseI GCWGC 6 cut(s) 1061, 1064, 1190, 1400, 1428, 1565
Tsp45I GTSAC 2 cut(s) 630, 764
TspGWI ACGGA 2 cut(s) 1217, 1592
Van91I CCANNNNNTGG 1 cut(s) 1600
VpaK11BI GGWCC 1 cut(s) 796
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 4 cut(s) 120, 1384, 1449, 1644
XbaI TCTAGA 1 cut(s) 1996
XceI RCATGY 3 cut(s) 1082, 1373, 1411
Zsp2I ATGCAT 1 cut(s) 1371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.