Rw0G023160

Protein NRT1 PTR FAMILY 7.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01079
OG0005709
Physical Location & Seq
Reverse (-)
7378 .. 9808
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G023160.1

Sequence Viewer

Length: 2064 bp
ATGATGACAGGAAACAACAACAAAGATGTTGCAGAATCATCAGAAGTTCTGAATAGAAGCTCTAATGACATTGAACAGAAGAGAAACTCGCACGAAAACAAACAGCAGAGTAATTTTCATGAAATTCAATTGAAGAAACACTCTCATGATAGTACTGAAGAGAAAAGGGACTCACATGATACTGAAGAGAAAAGGGACTCACATGATACTGAAGAGAATAGGAACTCTCACGGTACTGAAGAGAAAACCAACTCCAACTCTCATGATATTGAAGAGAAGACCAACTCTCATGAAAATGAAGGGAAGATCGACTCCCATGAAGGTGATGAACCACCTGAGAAAGGGACAATCACTACTAGAAGTCCCAATGCACCAAGCCCTATTAGAAAGAGAAGAGGAGGATGGAAACTTGCAATTCTCTTGCTAGCAAACCAAGGCCTAGCAACACTAGCTTTCTTTGGTGTTGGTGTGAACTTGGTTTTGTTTCTAGTCAGAGTTCTTGAACAATCAAATGCCGTAGCGGCCAACAATGTTAGCAAGTGGACTGGAACAGTTTATCTGTTCTCTCTGGTTGGAGCTTTCCTCAGCGATTCCTATTGGGGCCGTTACTTAACCTGTGCCGTCTTTCAGGTCTTCTTTGTAATGGGCTTGGGGCTAATGTCACTTACATCTTGGCTCTTTCTGATCCATCCATCTGGTTGTGGCAATGGAGAAAAACTTTGCAATCCCCCATCCAAAGCTGGTGTTATTCTTTTTTACCTATCAATATATTTAGTGGCATTTGGATATGGTGGTCACCAACCTACTATAGCAACATTTGGAGCGGACCAATTTGATGAGGCAGATCCTGAACAGCAAAGTTCCAGAGCAGTTTTCTTCTCTTATTTCTACTTTGCACTCAACGTGGGATGTCTCTTCTCAAACACCATCTTAGTTTATTATGAGGATCATGGATATTGGAATATAGGGTTTCTGGTCTCATTAGGGTCAGCAGTCATAGCCCTATTGTCCTATTTGATGGGATCAAGTCGGTATCGGTATATAAAACCATGTGGCAACCCTTTACCTCGTGTTGCTCAGGTATTTGTGGCTGCTGCTAGAAAATGGCATGTTGTTCCAGCTGATCCAGATAATCTGTATGAGATGGAAGGAAAAGAATCTGCAATCAAAGGGAGTAGAAAGATTCTTCACAGTAATGAAATTGAGTTTTTGGACAAGGCAGCAACGATAACGGACAGGGATCAAAATGAGAAAAACCCTTGGAGGCTTTGTACTGTAACCCAAGTCGAAGAAGCCAAATGCGTCCTGAAACTTCTACCTATATGGCTTTGCACTATTATTTACTCAGTGATCTTCACACAAATGGCTTCTCTATTCGTAGAGCAAGGTGATGTGATGCATGCCCAAATCGGAAATTTTCATATCCCAGCTGCTAGCATGTCAGCTTTTGACATATGCAGTGTCCTAATCTCCACCGGAATTTACCGCCAATTCCTTGTGCCTTTAGCTGGAAGATTAAGTGGAAACCCTAAAGGGTTATCAGAGCTTCAGAGAATGGGAATTGGACTAATTATTGGAATGTTAGCAATGGTTGCAGCTGGTGCCACGGAGATTGCAAGGCTCCAATATGTGGAGCCGGGTAAGAAAGTAAGCTCTTTGAGCATATTTTGGCAAATTCCACAATATGTTTTTGTTGGTGTTTCAGAAGTTTTCATGTATGTTGGTCAACTTGAGTTCTTTAATGGAGAAGCACCTGATGGGATAAAAAGCTTTGGAAGTTCGTTGTGCATGGCTTCAATCTCTCTTGGGAATTATGTGAGCAGTATGCTAGTTGCTATGGTGATGGGGATTACAGCTAGAGGTTCAGACCCAGGTTGGATTCCAAATAATTTGAATGAAGGTCATATGGACAGGTTCTACTTCTTGATTGCAGGACTAACAGTTCTCGACTTTGCCTTTTATTTATATCTTGCTAAGAGGTACAAGTGCATTAACCTTGAAGGCCCTGAGAATGAAGAGGTTAGTCAAGAAAGTCAGGATGATGAGGTGCTCAGAAGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

687

Amino Acids

76.42

Weight (kDa)

5.57

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 205 - 626 1.7e-88 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1601
AccB7I CCANNNNNTGG 1 cut(s) 1630
AccBSI CCGCTC 1 cut(s) 824
AciI CCGC 3 cut(s) 521, 824, 1486
AclWI GGATC 6 cut(s) 679, 839, 954, 1030, 1118, 1248
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 4 cut(s) 123, 1414, 1479, 1674
AcuI CTGAAG 5 cut(s) 177, 204, 231, 258, 1532
AfaI GTAC 4 cut(s) 154, 235, 1273, 1982
AfiI CCNNNNNNNGG 3 cut(s) 341, 1508, 1630
AgsI TTSAA 8 cut(s) 74, 128, 133, 272, 503, 1797, 1894, 2000
AjnI CCWGG 1 cut(s) 1870
AloI GAACNNNNNNTCC 2 cut(s) 1926, 1958
Alw21I GWGCWC 1 cut(s) 2052
Alw26I GTCTC 2 cut(s) 917, 982
AlwI GGATC 6 cut(s) 679, 839, 954, 1030, 1118, 1248
AlwNI CAGNNNCTG 1 cut(s) 848
AoxI GGCC 4 cut(s) 436, 522, 601, 2002
ApeKI GCWGC 5 cut(s) 1091, 1094, 1220, 1430, 1595
ApoI RAATTY 4 cut(s) 123, 1414, 1479, 1674
AspS9I GGNCC 3 cut(s) 601, 826, 2003
AsuC2I CCSGG 1 cut(s) 1638
AsuHPI GGTGA 4 cut(s) 335, 788, 1400, 1852
AsuNHI GCTAGC 2 cut(s) 424, 1433
AvaII GGWCC 1 cut(s) 826
BanI GGYRCC 1 cut(s) 1601
BauI CACGAG 1 cut(s) 1068
BbsI GAAGAC 2 cut(s) 284, 625
Bbv12I GWGCWC 1 cut(s) 2052
BbvCI CCTCAGC 1 cut(s) 584
BbvI GCAGC 5 cut(s) 1078, 1081, 1232, 1417, 1607
BccI CCATC 9 cut(s) 396, 696, 700, 739, 935, 1012, 1138, 1751, 1837
BceAI ACGGC 3 cut(s) 500, 588, 605
BciT130I CCWGG 1 cut(s) 1872
BcnI CCSGG 1 cut(s) 1638
BcoDI GTCTC 2 cut(s) 917, 982
BfaI CTAG 9 cut(s) 357, 425, 440, 449, 488, 1098, 1434, 1829, 1857
BfmI CTRYAG 1 cut(s) 807
BglI GCCNNNNNGGC 1 cut(s) 521
BisI GCNGC 6 cut(s) 522, 1092, 1095, 1221, 1431, 1596
BlsI GCNGC 6 cut(s) 523, 1093, 1096, 1222, 1432, 1597
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 2 cut(s) 1638, 1872
Bme18I GGWCC 1 cut(s) 826
BmgT120I GGNCC 3 cut(s) 601, 826, 2003
BmiI GGNNCC 4 cut(s) 602, 1603, 1622, 1635
BmrFI CCNGG 2 cut(s) 1638, 1872
BmsI GCATC 1 cut(s) 1386
BmtI GCTAGC 2 cut(s) 428, 1437
BpiI GAAGAC 2 cut(s) 284, 625
BplI GAGNNNNNCTC 2 cut(s) 567, 599
Bpu10I CCTNAGC 2 cut(s) 584, 1077
BpuEI CTTGAG 1 cut(s) 1751
BpuMI CCSGG 1 cut(s) 1638
BsaI GGTCTC 1 cut(s) 982
BsaJI CCNNGG 4 cut(s) 433, 1259, 1605, 1870
BsaWI WCCGGW 1 cut(s) 1475
BsaXI ACNNNNNCTCC 2 cut(s) 1255, 1285
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 1508, 1630
Bse1I ACTGG 1 cut(s) 550
Bse3DI GCAATG 2 cut(s) 712, 1593
BseBI CCWGG 1 cut(s) 1872
BseDI CCNNGG 4 cut(s) 433, 1259, 1605, 1870
BseGI GGATG 5 cut(s) 407, 688, 731, 914, 2044
BseLI CCNNNNNNNGG 3 cut(s) 341, 1508, 1630
BseMI GCAATG 2 cut(s) 712, 1593
BseMII CTCAG 5 cut(s) 327, 598, 1091, 1359, 1998
BseNI ACTGG 1 cut(s) 550
BseRI GAGGAG 1 cut(s) 411
BseXI GCAGC 5 cut(s) 1078, 1081, 1232, 1417, 1607
BseYI CCCAGC 1 cut(s) 1426
BshFI GGCC 4 cut(s) 438, 524, 603, 2004
BshNI GGYRCC 1 cut(s) 1601
BsiHKAI GWGCWC 1 cut(s) 2052
BsiSI CCGG 2 cut(s) 1476, 1637
BslFI GGGAC 4 cut(s) 182, 209, 348, 358
BslI CCNNNNNNNGG 3 cut(s) 341, 1508, 1630
BsmAI GTCTC 2 cut(s) 917, 982
BsmFI GGGAC 4 cut(s) 182, 209, 348, 358
BsnI GGCC 4 cut(s) 438, 524, 603, 2004
Bso31I GGTCTC 1 cut(s) 982
Bsp1286I GDGCHC 1 cut(s) 2052
Bsp143I GATC 8 cut(s) 306, 684, 844, 946, 1022, 1123, 1240, 1350
BspACI CCGC 3 cut(s) 521, 824, 1486
BspANI GGCC 4 cut(s) 438, 524, 603, 2004
BspCNI CTCAG 6 cut(s) 328, 597, 1090, 1358, 1999, 2064
BspHI TCATGA 4 cut(s) 118, 145, 262, 289
BspLI GGNNCC 4 cut(s) 602, 1603, 1622, 1635
BspOI GCTAGC 2 cut(s) 428, 1437
BspPI GGATC 6 cut(s) 679, 839, 954, 1030, 1118, 1248
BspT107I GGYRCC 1 cut(s) 1601
BspTNI GGTCTC 1 cut(s) 982
BsrBI CCGCTC 1 cut(s) 824
BsrDI GCAATG 2 cut(s) 712, 1593
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 4 cut(s) 433, 1259, 1605, 1870
BssMI GATC 8 cut(s) 306, 684, 844, 946, 1022, 1123, 1240, 1350
BssSI CACGAG 1 cut(s) 1068
BssT1I CCWWGG 2 cut(s) 433, 1259
Bst2BI CACGAG 1 cut(s) 1068
Bst2UI CCWGG 1 cut(s) 1872
Bst4CI ACNGT 5 cut(s) 233, 553, 1193, 1276, 1942
Bst6I CTCTTC 9 cut(s) 74, 153, 180, 207, 234, 267, 388, 920, 2010
BstAPI GCANNNNNTGC 2 cut(s) 1592, 1601
BstC8I GCNNGC 3 cut(s) 426, 1401, 1435
BstDEI CTNAG 8 cut(s) 336, 584, 931, 1077, 1345, 1974, 2007, 2051
BstDSI CCRYGG 1 cut(s) 1605
BstEII GGTNACC 1 cut(s) 794
BstENI CCTNNNNNAGG 1 cut(s) 339
BstF5I GGATG 5 cut(s) 407, 688, 731, 914, 2044
BstKTI GATC 8 cut(s) 309, 687, 847, 949, 1025, 1126, 1243, 1353
BstMAI GTCTC 2 cut(s) 917, 982
BstMBI GATC 8 cut(s) 306, 684, 844, 946, 1022, 1123, 1240, 1350
BstMWI GCNNNNNNNGC 6 cut(s) 449, 521, 998, 1592, 1601, 1659
BstNI CCWGG 1 cut(s) 1872
BstNSI RCATGY 3 cut(s) 1112, 1403, 1441
BstPI GGTNACC 1 cut(s) 794
BstSCI CCNGG 2 cut(s) 1636, 1870
BstSFI CTRYAG 1 cut(s) 807
BstV1I GCAGC 5 cut(s) 1078, 1081, 1232, 1417, 1607
BstV2I GAAGAC 2 cut(s) 284, 625
BstX2I RGATCY 1 cut(s) 844
BstXI CCANNNNNNTGG 1 cut(s) 695
BstYI RGATCY 1 cut(s) 844
BsuRI GGCC 4 cut(s) 438, 524, 603, 2004
BtgI CCRYGG 1 cut(s) 1605
BtsCI GGATG 5 cut(s) 407, 688, 731, 914, 2044
BtsI GCAGTG 1 cut(s) 1465
BtsIMutI CAGTG 2 cut(s) 1353, 1465
Cac8I GCNNGC 3 cut(s) 426, 1401, 1435
CaiI CAGNNNCTG 1 cut(s) 848
CciI TCATGA 4 cut(s) 118, 145, 262, 289
Cfr13I GGNCC 3 cut(s) 601, 826, 2003
CseI GACGC 1 cut(s) 1291
Csp6I GTAC 4 cut(s) 153, 234, 1272, 1981
CspCI CAANNNNNGTGG 2 cut(s) 1594, 1629
CviQI GTAC 4 cut(s) 153, 234, 1272, 1981
DdeI CTNAG 8 cut(s) 336, 584, 931, 1077, 1345, 1974, 2007, 2051
DpnI GATC 8 cut(s) 308, 686, 846, 948, 1024, 1125, 1242, 1352
DpnII GATC 8 cut(s) 306, 684, 844, 946, 1022, 1123, 1240, 1350
EaeI YGGCCR 1 cut(s) 522
Eam1104I CTCTTC 9 cut(s) 74, 153, 180, 207, 234, 267, 388, 920, 2010
EarI CTCTTC 9 cut(s) 74, 153, 180, 207, 234, 267, 388, 920, 2010
Eco130I CCWWGG 2 cut(s) 433, 1259
Eco147I AGGCCT 1 cut(s) 438
Eco31I GGTCTC 1 cut(s) 982
Eco47I GGWCC 1 cut(s) 826
Eco57I CTGAAG 5 cut(s) 177, 204, 231, 258, 1532
Eco91I GGTNACC 1 cut(s) 794
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 2003
EcoO65I GGTNACC 1 cut(s) 794
EcoRII CCWGG 1 cut(s) 1870
EcoT14I CCWWGG 2 cut(s) 433, 1259
EcoT22I ATGCAT 1 cut(s) 1401
ErhI CCWWGG 2 cut(s) 433, 1259
FaqI GGGAC 4 cut(s) 182, 209, 348, 358
FauNDI CATATG 2 cut(s) 1454, 1905
Fnu4HI GCNGC 6 cut(s) 522, 1092, 1095, 1221, 1431, 1596
FokI GGATG 5 cut(s) 414, 675, 718, 921, 2051
Fsp4HI GCNGC 6 cut(s) 522, 1092, 1095, 1221, 1431, 1596
FspBI CTAG 9 cut(s) 357, 425, 440, 449, 488, 1098, 1434, 1829, 1857
GluI GCNGC 6 cut(s) 522, 1092, 1095, 1221, 1431, 1596
GsaI CCCAGC 1 cut(s) 1430
HaeIII GGCC 4 cut(s) 438, 524, 603, 2004
HapII CCGG 2 cut(s) 1476, 1637
HgaI GACGC 1 cut(s) 1291
HincII GTYRAC 1 cut(s) 1727
HindII GTYRAC 1 cut(s) 1727
HindIII AAGCTT 1 cut(s) 1768
HinfI GANTC 8 cut(s) 35, 170, 197, 311, 590, 1157, 1183, 1879
HpaII CCGG 2 cut(s) 1476, 1637
HphI GGTGA 4 cut(s) 335, 788, 1400, 1852
Hpy166II GTNNAC 3 cut(s) 472, 543, 1727
Hpy8I GTNNAC 3 cut(s) 472, 543, 1727
HpyAV CCTTC 5 cut(s) 293, 314, 1142, 1892, 1994
HpyCH4III ACNGT 5 cut(s) 233, 553, 1193, 1276, 1942
HpyCH4IV ACGT 1 cut(s) 903
HpyF10VI GCNNNNNNNGC 6 cut(s) 449, 521, 998, 1592, 1601, 1659
HpyF3I CTNAG 8 cut(s) 336, 584, 931, 1077, 1345, 1974, 2007, 2051
HpySE526I ACGT 1 cut(s) 903
Kzo9I GATC 8 cut(s) 306, 684, 844, 946, 1022, 1123, 1240, 1350
LmnI GCTCC 4 cut(s) 575, 821, 1626, 1633
Lsp1109I GCAGC 5 cut(s) 1078, 1081, 1232, 1417, 1607
LweI GCATC 1 cut(s) 1386
MaeI CTAG 9 cut(s) 357, 425, 440, 449, 488, 1098, 1434, 1829, 1857
MaeII ACGT 1 cut(s) 903
MaeIII GTNAC 4 cut(s) 605, 660, 794, 1276
MalI GATC 8 cut(s) 308, 686, 846, 948, 1024, 1125, 1242, 1352
MbiI CCGCTC 1 cut(s) 824
MboI GATC 8 cut(s) 306, 684, 844, 946, 1022, 1123, 1240, 1350
MfeI CAATTG 1 cut(s) 128
MflI RGATCY 1 cut(s) 844
MhlI GDGCHC 1 cut(s) 2052
MlyI GAGTC 3 cut(s) 164, 191, 305
MmeI TCCRAC 3 cut(s) 279, 553, 1856
Mph1103I ATGCAT 1 cut(s) 1401
MseI TTAA 4 cut(s) 611, 1517, 1740, 1992
MslI CAYNNNNRTG 5 cut(s) 144, 294, 321, 1194, 1361
MspA1I CMGCKG 3 cut(s) 1121, 1430, 1598
MspI CCGG 2 cut(s) 1476, 1637
MspR9I CCNGG 2 cut(s) 1638, 1872
MunI CAATTG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 1872
MwoI GCNNNNNNNGC 6 cut(s) 449, 521, 998, 1592, 1601, 1659
NciI CCSGG 1 cut(s) 1638
NdeI CATATG 2 cut(s) 1454, 1905
NdeII GATC 8 cut(s) 306, 684, 844, 946, 1022, 1123, 1240, 1350
NheI GCTAGC 2 cut(s) 424, 1433
NlaIV GGNNCC 4 cut(s) 602, 1603, 1622, 1635
NmuCI GTSAC 2 cut(s) 660, 794
NsiI ATGCAT 1 cut(s) 1401
NspI RCATGY 3 cut(s) 1112, 1403, 1441
PaeI GCATGC 1 cut(s) 1403
PagI TCATGA 4 cut(s) 118, 145, 262, 289
PceI AGGCCT 1 cut(s) 438
PfeI GAWTC 5 cut(s) 35, 590, 1157, 1183, 1879
PflMI CCANNNNNTGG 1 cut(s) 1630
PkrI GCNGC 6 cut(s) 523, 1093, 1096, 1222, 1432, 1597
PleI GAGTC 3 cut(s) 164, 191, 305
PpsI GAGTC 3 cut(s) 164, 191, 305
Psp6I CCWGG 1 cut(s) 1870
PspEI GGTNACC 1 cut(s) 794
PspFI CCCAGC 1 cut(s) 1426
PspGI CCWGG 1 cut(s) 1870
PspN4I GGNNCC 4 cut(s) 602, 1603, 1622, 1635
PspPI GGNCC 3 cut(s) 601, 826, 2003
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 1 cut(s) 844
PvuII CAGCTG 3 cut(s) 1121, 1430, 1598
RsaI GTAC 4 cut(s) 154, 235, 1273, 1982
RsaNI GTAC 4 cut(s) 153, 234, 1272, 1981
RseI CAYNNNNRTG 5 cut(s) 144, 294, 321, 1194, 1361
SaqAI TTAA 4 cut(s) 611, 1517, 1740, 1992
SatI GCNGC 6 cut(s) 522, 1092, 1095, 1221, 1431, 1596
Sau3AI GATC 8 cut(s) 306, 684, 844, 946, 1022, 1123, 1240, 1350
Sau96I GGNCC 3 cut(s) 601, 826, 2003
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 3 cut(s) 164, 191, 305
ScrFI CCNGG 2 cut(s) 1638, 1872
SduI GDGCHC 1 cut(s) 2052
SfaNI GCATC 1 cut(s) 1386
SfcI CTRYAG 1 cut(s) 807
SinI GGWCC 1 cut(s) 826
SmiMI CAYNNNNRTG 5 cut(s) 144, 294, 321, 1194, 1361
SmlI CTYRAG 1 cut(s) 1730
SmoI CTYRAG 1 cut(s) 1730
SphI GCATGC 1 cut(s) 1403
SseBI AGGCCT 1 cut(s) 438
SsiI CCGC 3 cut(s) 521, 824, 1486
SspMI CTAG 9 cut(s) 357, 425, 440, 449, 488, 1098, 1434, 1829, 1857
StuI AGGCCT 1 cut(s) 438
StyD4I CCNGG 2 cut(s) 1636, 1870
StyI CCWWGG 2 cut(s) 433, 1259
TaaI ACNGT 5 cut(s) 233, 553, 1193, 1276, 1942
TaiI ACGT 1 cut(s) 906
TaqI TCGA 3 cut(s) 309, 1287, 1947
TatI WGTACW 2 cut(s) 152, 1271
TauI GCSGC 1 cut(s) 524
TfiI GAWTC 5 cut(s) 35, 590, 1157, 1183, 1879
Tru1I TTAA 4 cut(s) 611, 1517, 1740, 1992
Tru9I TTAA 4 cut(s) 611, 1517, 1740, 1992
TscAI CASTG 2 cut(s) 1353, 1465
TseFI GTSAC 2 cut(s) 660, 794
TseI GCWGC 5 cut(s) 1091, 1094, 1220, 1430, 1595
Tsp45I GTSAC 2 cut(s) 660, 794
TspGWI ACGGA 2 cut(s) 1247, 1622
TspRI CASTG 2 cut(s) 1353, 1465
Van91I CCANNNNNTGG 1 cut(s) 1630
VpaK11BI GGWCC 1 cut(s) 826
XagI CCTNNNNNAGG 1 cut(s) 339
XapI RAATTY 4 cut(s) 123, 1414, 1479, 1674
XceI RCATGY 3 cut(s) 1112, 1403, 1441
XspI CTAG 9 cut(s) 357, 425, 440, 449, 488, 1098, 1434, 1829, 1857
ZrmI AGTACT 1 cut(s) 154
Zsp2I ATGCAT 1 cut(s) 1401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.