Rroxscaffold_1G00002860

Protein NRT1 PTR FAMILY 7.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005709
Physical Location & Seq
Reverse (-)
3390916 .. 3393325
2410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00002860.1

Sequence Viewer

Length: 2037 bp
ATGATGACAGGAAACAACAACAAAGGTGTTGCAGAATCATCAGAAGTTCTGAATAGAAGCTCTAATGACATTGAACAGAAGAGAAACTCGCACGAAAACAAACAGCAGAGTAATTTTCATGAAATTCAATTGAAGAAACACTCTCATGATAGTATTGAAGAGAAAAGGGACTCACATGATACTGAAGAGAATAGGAACTCTCACGGTACTGAAGAGAAAACCAACTCCAACTCTCATGATATTGAAGAGAAGACCAACTCTCATGAAAATGAAGGGAAGATCGACTCCCATGAAGGTGATGAACCACCTGAGAAAGGGACAATCACTACTAGAAGTCCCAATGCACCAAGCCCTATTAGTAAGAGAAGAGGAGGATGGAAACTTGCAATTCTCTTGCTAGCAAATCAAGGCCTAGCAACACTAGCTTTCTTTGGTGTTGGTGTGAATTTGGTTTTGTTTCTAGTCAGAGTTCTTGAACAATCAAATGCCGTAGCGGCCAACAATGTTAGCAAGTGGACTGGAACAGTTTATCTGTTCTCTCTGGTTGGAGCTTTCCTCAGCGATTCCTATTGGGGCCGTTACTTAACCTGTGCCGTCTTTCAGGTCTTCTTTGTAATGGGCTTGGGGCTAATGTCACTTACATCTTGGCTCTTTCTGATCCATCCATCTGGTTGTGGCGATGGAGAAAAACTTTGCAATCCCCCATCCAAAGCTGGTGTTATTCTTTTTTACCTGTCAATATATTTAGTGGCATTTGGATATGGTGGTCACCAACCTACTATAGCAACATTTGGAGCGGACCAATTTGATGAGGCAGATCCTGAACAGCAAAGTTCCAGAGCAGTTTTCTTCTCTTATTTCTACTTTGCACTCAACGTGGGGTGTCTCTTCTCAAACACCATCTTAGTTTATTATGAGGATCATGGATTTTGGAATATAGGGTTTCTGGTCTCATTAGGGTCAGCAGTCATAGCCCTATTGTCCTATTTGATGGGATCAAGTCGGTATCGGTATATAAAACCATGTGGCAACCCTTTACCTCGTGTTGCTCAGGTATTTGTGGCTGCTGCTAGAAAATGGCATGTTGTTCCAGCTGATCCAGATAATCTGTATGAGATGGAAGGAAAAGAATCTGCAATCAAAGGGAGTAGAAAGATTCTTCACAGTAATGAAATTGAGTTTTTGGACAAGGCAGCAACGATAACGGACAGGGATCAAAATGAGAAAAACCCTTGGAGGCTTTGTACTGTAACCCAAGTCGAAGAAGCCAAATGCGTCCTGAAACTTCTACCTATTTGGCTTTGCACTATTATTTACTCAGTGATCTTCACACAAATGGCTTCTCTATTCGTAGAGCAAGGTGATGTGATGCATGCCCAAATCGGAAATTTTCATATCCCAGCTGCTAGCATGTCAGCTTTTGACATATGCAGCGTCCTAATCTCCACCGGAATTTACCGCCAAGTCCTTGTGCCTTTAGCTGGAAGATTAAGTGGAAACCCTAAAGGGTTATCAGAGCTTCAGAGAATGGGAATTGGACTAATTATTGGAATGTTAGCAATGGTTGCAGCTGGTGCCACGGAGATTGCAAGGCTCCAATATGTGGAGCCGGGTAAGAAAGTAAGCTCTTTGAGCATATTTTGGCAAATTCCACAATATGTTTTTGTTGGTGTTTCAGAAGTTTTCATGTATGTTGGTCAACTTGAGTTCTTTAATGGAGAAGCCCCAGATGGGATAAAAAGCTTAGGAAGTTCGTTGTGCATGGCTTCAATCTCTCTTGGGAATTATGTGAGCAGTATGCTAGTTGCTATGGTGATGGGGATTACAGCTAGAGGTTCAGACCCAGGTTGGATTCCAAATAATTTGAATGAAGGTCATATGGACAGGTTCTACTTCTTGATTGCAGGACTAACAGTTCTCGACTTTGCTTTTTATTTATATCTTGCTAAGAGGTACAAGTGCATTAACCTTGAAGGCCCTGAGAATGAAGAGGTTAGTCAAGAAAGTCAGGATGATGAGGTGCTCAGAAGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

678

Amino Acids

75.11

Weight (kDa)

5.58

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 196 - 617 1.6e-88 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1574
AccB7I CCANNNNNTGG 1 cut(s) 1603
AccBSI CCGCTC 1 cut(s) 797
AciI CCGC 3 cut(s) 494, 797, 1459
AclWI GGATC 6 cut(s) 652, 812, 927, 1003, 1091, 1221
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 5 cut(s) 123, 445, 1387, 1452, 1647
AcuI CTGAAG 3 cut(s) 204, 231, 1505
AfaI GTAC 3 cut(s) 208, 1246, 1955
AfiI CCNNNNNNNGG 4 cut(s) 314, 1481, 1603, 1731
AgsI TTSAA 9 cut(s) 74, 128, 133, 158, 245, 476, 1770, 1867, 1973
AjnI CCWGG 1 cut(s) 1843
AloI GAACNNNNNNTCC 2 cut(s) 1899, 1931
Alw21I GWGCWC 1 cut(s) 2025
Alw26I GTCTC 2 cut(s) 890, 955
AlwI GGATC 6 cut(s) 652, 812, 927, 1003, 1091, 1221
AlwNI CAGNNNCTG 1 cut(s) 821
AoxI GGCC 4 cut(s) 409, 495, 574, 1975
ApeKI GCWGC 6 cut(s) 1064, 1067, 1193, 1403, 1431, 1568
ApoI RAATTY 5 cut(s) 123, 445, 1387, 1452, 1647
AspS9I GGNCC 3 cut(s) 574, 799, 1976
AsuC2I CCSGG 1 cut(s) 1611
AsuHPI GGTGA 4 cut(s) 308, 761, 1373, 1825
AsuNHI GCTAGC 2 cut(s) 397, 1406
AvaII GGWCC 1 cut(s) 799
BanI GGYRCC 1 cut(s) 1574
BauI CACGAG 1 cut(s) 1041
BbsI GAAGAC 2 cut(s) 257, 598
Bbv12I GWGCWC 1 cut(s) 2025
BbvCI CCTCAGC 1 cut(s) 557
BbvI GCAGC 6 cut(s) 1051, 1054, 1205, 1390, 1443, 1580
BceAI ACGGC 3 cut(s) 473, 561, 578
BciT130I CCWGG 1 cut(s) 1845
BcnI CCSGG 1 cut(s) 1611
BcoDI GTCTC 2 cut(s) 890, 955
BfaI CTAG 9 cut(s) 330, 398, 413, 422, 461, 1071, 1407, 1802, 1830
BfmI CTRYAG 1 cut(s) 780
BglI GCCNNNNNGGC 1 cut(s) 494
BisI GCNGC 7 cut(s) 495, 1065, 1068, 1194, 1404, 1432, 1569
BlsI GCNGC 7 cut(s) 496, 1066, 1069, 1195, 1405, 1433, 1570
Bme1390I CCNGG 2 cut(s) 1611, 1845
Bme18I GGWCC 1 cut(s) 799
BmgT120I GGNCC 3 cut(s) 574, 799, 1976
BmiI GGNNCC 4 cut(s) 575, 1576, 1595, 1608
BmrFI CCNGG 2 cut(s) 1611, 1845
BmsI GCATC 1 cut(s) 1359
BmtI GCTAGC 2 cut(s) 401, 1410
BpiI GAAGAC 2 cut(s) 257, 598
BplI GAGNNNNNCTC 2 cut(s) 540, 572
Bpu10I CCTNAGC 3 cut(s) 557, 1050, 1744
BpuEI CTTGAG 1 cut(s) 1724
BpuMI CCSGG 1 cut(s) 1611
BsaI GGTCTC 1 cut(s) 955
BsaJI CCNNGG 3 cut(s) 1232, 1578, 1843
BsaWI WCCGGW 1 cut(s) 1448
BsaXI ACNNNNNCTCC 2 cut(s) 1228, 1258
Bsc4I CCNNNNNNNGG 4 cut(s) 314, 1481, 1603, 1731
Bse1I ACTGG 1 cut(s) 523
Bse3DI GCAATG 1 cut(s) 1566
BseBI CCWGG 1 cut(s) 1845
BseDI CCNNGG 3 cut(s) 1232, 1578, 1843
BseGI GGATG 4 cut(s) 380, 661, 704, 2017
BseLI CCNNNNNNNGG 4 cut(s) 314, 1481, 1603, 1731
BseMI GCAATG 1 cut(s) 1566
BseMII CTCAG 5 cut(s) 300, 571, 1064, 1332, 1971
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 1 cut(s) 384
BseXI GCAGC 6 cut(s) 1051, 1054, 1205, 1390, 1443, 1580
BseYI CCCAGC 1 cut(s) 1399
BshFI GGCC 4 cut(s) 411, 497, 576, 1977
BshNI GGYRCC 1 cut(s) 1574
BsiHKAI GWGCWC 1 cut(s) 2025
BsiSI CCGG 2 cut(s) 1449, 1610
BslFI GGGAC 3 cut(s) 182, 321, 331
BslI CCNNNNNNNGG 4 cut(s) 314, 1481, 1603, 1731
BsmAI GTCTC 2 cut(s) 890, 955
BsmFI GGGAC 3 cut(s) 182, 321, 331
BsnI GGCC 4 cut(s) 411, 497, 576, 1977
Bso31I GGTCTC 1 cut(s) 955
Bsp1286I GDGCHC 1 cut(s) 2025
Bsp143I GATC 8 cut(s) 279, 657, 817, 919, 995, 1096, 1213, 1323
BspACI CCGC 3 cut(s) 494, 797, 1459
BspANI GGCC 4 cut(s) 411, 497, 576, 1977
BspCNI CTCAG 6 cut(s) 301, 570, 1063, 1331, 1972, 2037
BspHI TCATGA 4 cut(s) 118, 145, 235, 262
BspLI GGNNCC 4 cut(s) 575, 1576, 1595, 1608
BspOI GCTAGC 2 cut(s) 401, 1410
BspPI GGATC 6 cut(s) 652, 812, 927, 1003, 1091, 1221
BspT107I GGYRCC 1 cut(s) 1574
BspTNI GGTCTC 1 cut(s) 955
BsrBI CCGCTC 1 cut(s) 797
BsrDI GCAATG 1 cut(s) 1566
BsrI ACTGG 1 cut(s) 523
BssECI CCNNGG 3 cut(s) 1232, 1578, 1843
BssMI GATC 8 cut(s) 279, 657, 817, 919, 995, 1096, 1213, 1323
BssSI CACGAG 1 cut(s) 1041
BssT1I CCWWGG 1 cut(s) 1232
Bst2BI CACGAG 1 cut(s) 1041
Bst2UI CCWGG 1 cut(s) 1845
Bst4CI ACNGT 5 cut(s) 206, 526, 1166, 1249, 1915
Bst6I CTCTTC 8 cut(s) 74, 153, 180, 207, 240, 361, 893, 1983
BstAPI GCANNNNNTGC 2 cut(s) 1565, 1574
BstC8I GCNNGC 3 cut(s) 399, 1374, 1408
BstDEI CTNAG 9 cut(s) 309, 557, 904, 1050, 1318, 1744, 1947, 1980, 2024
BstDSI CCRYGG 1 cut(s) 1578
BstEII GGTNACC 1 cut(s) 767
BstENI CCTNNNNNAGG 1 cut(s) 312
BstF5I GGATG 4 cut(s) 380, 661, 704, 2017
BstKTI GATC 8 cut(s) 282, 660, 820, 922, 998, 1099, 1216, 1326
BstMAI GTCTC 2 cut(s) 890, 955
BstMBI GATC 8 cut(s) 279, 657, 817, 919, 995, 1096, 1213, 1323
BstMWI GCNNNNNNNGC 6 cut(s) 422, 494, 971, 1565, 1574, 1632
BstNI CCWGG 1 cut(s) 1845
BstNSI RCATGY 3 cut(s) 1085, 1376, 1414
BstPI GGTNACC 1 cut(s) 767
BstSCI CCNGG 2 cut(s) 1609, 1843
BstSFI CTRYAG 1 cut(s) 780
BstV1I GCAGC 6 cut(s) 1051, 1054, 1205, 1390, 1443, 1580
BstV2I GAAGAC 2 cut(s) 257, 598
BstX2I RGATCY 1 cut(s) 817
BstXI CCANNNNNNTGG 1 cut(s) 668
BstYI RGATCY 1 cut(s) 817
BsuRI GGCC 4 cut(s) 411, 497, 576, 1977
BtgI CCRYGG 1 cut(s) 1578
BtgZI GCGATG 1 cut(s) 693
BtsCI GGATG 4 cut(s) 380, 661, 704, 2017
BtsIMutI CAGTG 1 cut(s) 1326
Cac8I GCNNGC 3 cut(s) 399, 1374, 1408
CaiI CAGNNNCTG 1 cut(s) 821
CciI TCATGA 4 cut(s) 118, 145, 235, 262
Cfr13I GGNCC 3 cut(s) 574, 799, 1976
CseI GACGC 2 cut(s) 1264, 1423
Csp6I GTAC 3 cut(s) 207, 1245, 1954
CspCI CAANNNNNGTGG 2 cut(s) 1567, 1602
CviQI GTAC 3 cut(s) 207, 1245, 1954
DdeI CTNAG 9 cut(s) 309, 557, 904, 1050, 1318, 1744, 1947, 1980, 2024
DpnI GATC 8 cut(s) 281, 659, 819, 921, 997, 1098, 1215, 1325
DpnII GATC 8 cut(s) 279, 657, 817, 919, 995, 1096, 1213, 1323
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 8 cut(s) 74, 153, 180, 207, 240, 361, 893, 1983
EarI CTCTTC 8 cut(s) 74, 153, 180, 207, 240, 361, 893, 1983
Eco130I CCWWGG 1 cut(s) 1232
Eco147I AGGCCT 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 955
Eco47I GGWCC 1 cut(s) 799
Eco57I CTGAAG 3 cut(s) 204, 231, 1505
Eco91I GGTNACC 1 cut(s) 767
EcoNI CCTNNNNNAGG 1 cut(s) 312
EcoO109I RGGNCCY 1 cut(s) 1976
EcoO65I GGTNACC 1 cut(s) 767
EcoRII CCWGG 1 cut(s) 1843
EcoT14I CCWWGG 1 cut(s) 1232
EcoT22I ATGCAT 1 cut(s) 1374
ErhI CCWWGG 1 cut(s) 1232
FaqI GGGAC 3 cut(s) 182, 321, 331
FauNDI CATATG 2 cut(s) 1427, 1878
Fnu4HI GCNGC 7 cut(s) 495, 1065, 1068, 1194, 1404, 1432, 1569
FokI GGATG 4 cut(s) 387, 648, 691, 2024
Fsp4HI GCNGC 7 cut(s) 495, 1065, 1068, 1194, 1404, 1432, 1569
FspBI CTAG 9 cut(s) 330, 398, 413, 422, 461, 1071, 1407, 1802, 1830
GluI GCNGC 7 cut(s) 495, 1065, 1068, 1194, 1404, 1432, 1569
GsaI CCCAGC 1 cut(s) 1403
HaeIII GGCC 4 cut(s) 411, 497, 576, 1977
HapII CCGG 2 cut(s) 1449, 1610
HgaI GACGC 2 cut(s) 1264, 1423
HincII GTYRAC 1 cut(s) 1700
HindII GTYRAC 1 cut(s) 1700
HindIII AAGCTT 1 cut(s) 1741
HinfI GANTC 7 cut(s) 35, 170, 284, 563, 1130, 1156, 1852
HpaII CCGG 2 cut(s) 1449, 1610
HphI GGTGA 4 cut(s) 308, 761, 1373, 1825
Hpy166II GTNNAC 2 cut(s) 516, 1700
Hpy8I GTNNAC 2 cut(s) 516, 1700
HpyAV CCTTC 5 cut(s) 266, 287, 1115, 1865, 1967
HpyCH4III ACNGT 5 cut(s) 206, 526, 1166, 1249, 1915
HpyCH4IV ACGT 1 cut(s) 876
HpyF10VI GCNNNNNNNGC 6 cut(s) 422, 494, 971, 1565, 1574, 1632
HpyF3I CTNAG 9 cut(s) 309, 557, 904, 1050, 1318, 1744, 1947, 1980, 2024
HpySE526I ACGT 1 cut(s) 876
Kzo9I GATC 8 cut(s) 279, 657, 817, 919, 995, 1096, 1213, 1323
LmnI GCTCC 4 cut(s) 548, 794, 1599, 1606
Lsp1109I GCAGC 6 cut(s) 1051, 1054, 1205, 1390, 1443, 1580
LweI GCATC 1 cut(s) 1359
MaeI CTAG 9 cut(s) 330, 398, 413, 422, 461, 1071, 1407, 1802, 1830
MaeII ACGT 1 cut(s) 876
MaeIII GTNAC 4 cut(s) 578, 633, 767, 1249
MalI GATC 8 cut(s) 281, 659, 819, 921, 997, 1098, 1215, 1325
MbiI CCGCTC 1 cut(s) 797
MboI GATC 8 cut(s) 279, 657, 817, 919, 995, 1096, 1213, 1323
MfeI CAATTG 1 cut(s) 128
MflI RGATCY 1 cut(s) 817
MhlI GDGCHC 1 cut(s) 2025
MlyI GAGTC 2 cut(s) 164, 278
MmeI TCCRAC 3 cut(s) 252, 526, 1829
Mph1103I ATGCAT 1 cut(s) 1374
MseI TTAA 4 cut(s) 584, 1490, 1713, 1965
MslI CAYNNNNRTG 5 cut(s) 144, 267, 294, 1167, 1334
MspA1I CMGCKG 3 cut(s) 1094, 1403, 1571
MspI CCGG 2 cut(s) 1449, 1610
MspR9I CCNGG 2 cut(s) 1611, 1845
MunI CAATTG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 1845
MwoI GCNNNNNNNGC 6 cut(s) 422, 494, 971, 1565, 1574, 1632
NciI CCSGG 1 cut(s) 1611
NdeI CATATG 2 cut(s) 1427, 1878
NdeII GATC 8 cut(s) 279, 657, 817, 919, 995, 1096, 1213, 1323
NheI GCTAGC 2 cut(s) 397, 1406
NlaIV GGNNCC 4 cut(s) 575, 1576, 1595, 1608
NmuCI GTSAC 2 cut(s) 633, 767
NsiI ATGCAT 1 cut(s) 1374
NspI RCATGY 3 cut(s) 1085, 1376, 1414
PaeI GCATGC 1 cut(s) 1376
PagI TCATGA 4 cut(s) 118, 145, 235, 262
PceI AGGCCT 1 cut(s) 411
PfeI GAWTC 5 cut(s) 35, 563, 1130, 1156, 1852
PflMI CCANNNNNTGG 1 cut(s) 1603
PkrI GCNGC 7 cut(s) 496, 1066, 1069, 1195, 1405, 1433, 1570
PleI GAGTC 2 cut(s) 164, 278
PpsI GAGTC 2 cut(s) 164, 278
Psp6I CCWGG 1 cut(s) 1843
PspEI GGTNACC 1 cut(s) 767
PspFI CCCAGC 1 cut(s) 1399
PspGI CCWGG 1 cut(s) 1843
PspN4I GGNNCC 4 cut(s) 575, 1576, 1595, 1608
PspPI GGNCC 3 cut(s) 574, 799, 1976
PstNI CAGNNNCTG 1 cut(s) 821
PsuI RGATCY 1 cut(s) 817
PvuII CAGCTG 3 cut(s) 1094, 1403, 1571
RsaI GTAC 3 cut(s) 208, 1246, 1955
RsaNI GTAC 3 cut(s) 207, 1245, 1954
RseI CAYNNNNRTG 5 cut(s) 144, 267, 294, 1167, 1334
SaqAI TTAA 4 cut(s) 584, 1490, 1713, 1965
SatI GCNGC 7 cut(s) 495, 1065, 1068, 1194, 1404, 1432, 1569
Sau3AI GATC 8 cut(s) 279, 657, 817, 919, 995, 1096, 1213, 1323
Sau96I GGNCC 3 cut(s) 574, 799, 1976
SchI GAGTC 2 cut(s) 164, 278
ScrFI CCNGG 2 cut(s) 1611, 1845
SduI GDGCHC 1 cut(s) 2025
SfaNI GCATC 1 cut(s) 1359
SfcI CTRYAG 1 cut(s) 780
SinI GGWCC 1 cut(s) 799
SmiMI CAYNNNNRTG 5 cut(s) 144, 267, 294, 1167, 1334
SmlI CTYRAG 1 cut(s) 1703
SmoI CTYRAG 1 cut(s) 1703
SphI GCATGC 1 cut(s) 1376
SseBI AGGCCT 1 cut(s) 411
SsiI CCGC 3 cut(s) 494, 797, 1459
SspMI CTAG 9 cut(s) 330, 398, 413, 422, 461, 1071, 1407, 1802, 1830
StuI AGGCCT 1 cut(s) 411
StyD4I CCNGG 2 cut(s) 1609, 1843
StyI CCWWGG 1 cut(s) 1232
TaaI ACNGT 5 cut(s) 206, 526, 1166, 1249, 1915
TaiI ACGT 1 cut(s) 879
TaqI TCGA 3 cut(s) 282, 1260, 1920
TatI WGTACW 1 cut(s) 1244
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 5 cut(s) 35, 563, 1130, 1156, 1852
Tru1I TTAA 4 cut(s) 584, 1490, 1713, 1965
Tru9I TTAA 4 cut(s) 584, 1490, 1713, 1965
TscAI CASTG 1 cut(s) 1326
TseFI GTSAC 2 cut(s) 633, 767
TseI GCWGC 6 cut(s) 1064, 1067, 1193, 1403, 1431, 1568
Tsp45I GTSAC 2 cut(s) 633, 767
TspGWI ACGGA 2 cut(s) 1220, 1595
TspRI CASTG 1 cut(s) 1326
Van91I CCANNNNNTGG 1 cut(s) 1603
VpaK11BI GGWCC 1 cut(s) 799
XagI CCTNNNNNAGG 1 cut(s) 312
XapI RAATTY 5 cut(s) 123, 445, 1387, 1452, 1647
XceI RCATGY 3 cut(s) 1085, 1376, 1414
XspI CTAG 9 cut(s) 330, 398, 413, 422, 461, 1071, 1407, 1802, 1830
Zsp2I ATGCAT 1 cut(s) 1374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.