Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005709

Physical Location & Seq

Genomic Coordinates Forward (+)

64665626 .. 64667660

Gene Structure 2035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0469900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTCCTTAAGTGGAGAGCTCCTCCACAAGGGTGGTTGAAGATTAACTTTGATGGCGCATTTGATAGTGGTACTGGCAGGGCAGCAGTGGGCTTCTTTATGCAAGACGATACTGGTACATACATGAGTGCTGTTGGGAAAGCTATCTCTCATATTGTTTCAGCAGAACATGCAGAGTTGGTGGCTTGTAGAGAGGCACTAGGACACAGAACATTTCAGCTCTTAATTGGTAGGTTGTATGACGATATCAGGGAAGATTTGGACTCTATTCGAAACTCTCGGTTGGTTCATGCTAGGAGGAAAGCCAATAAAGTATCCCATCTTCTAGTAGCTCATGCTCCTTTCTTTATACAAGATGTAATAGGCGGTGGGGGATTGTTGGGGATTGCACTGAGTTTAGAGGCCAACAGGGTGGATTTTGCCATTCTGGCAATGCTAGCTTGGCGGCGTGTGATTGCTAATGGTGGTGTTGACGCAAGCAACTTCGTCGTTGGTGGTGGCACAGACAGTGCTGCACGGATCAAGGATGCTAGTGATGATTCGGGTCTGGATCAGTGTCTGGTGGATCTGGGCTTTGGGCTTAGGGCTTTGCACTTGGGCCTTTTCTCTCTTTGTTTTAGTTTAGGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

210

Amino Acids

22.54

Weight (kDa)

6.64

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19640
fragaria_vesca	FvH4_3g44190 FvH4_3g44201
malus_domestica	MD03G1016400.v1.1 MD03G1016700.v1.1 MD11G1017300.v1.1
prunus_persica	Prupe.6G014900_v2.0.a1 Prupe.6G014900_v2.0.a1 Prupe.6G015100_v2.0.a1
pyrus_communis	pycom03g01410 pycom11g01220
rosa_chinensis	RchiOBHm_Chr5g0080531 RchiOBHm_Chr5g0080551
rosa_laevigata	RLG00000036865 RLG00000036867
rosa_multiflora	Rmu_sc0000359.1_g000005 Rmu_sc0000359.1_g000011
rosa_roxburghii	Rroxscaffold_1G00002830 Rroxscaffold_1G00002860
rosa_rugosa	Rorug05G0469600 Rorug05G0469900
rosa_samantha	Rh5AG523300 Rh5AG523500 Rh5CG568500 Rh5CG568700 Rh5DG555500
rosa_wichuraiana	Rw0G023160 Rw5G048580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	366, 445
AclWI	GGATC	3 cut(s)	527, 558, 573
AfaI	GTAC	2 cut(s)	73, 118
AfiI	CCNNNNNNNGG	1 cut(s)	29
AflII	CTTAAG	1 cut(s)	8
AgsI	TTSAA	1 cut(s)	40
AleI	CACNNNNGTG	1 cut(s)	31
AluBI	AGCT	6 cut(s)	20, 143, 220, 332, 440, 630
AluI	AGCT	6 cut(s)	20, 143, 220, 332, 440, 630
Alw21I	GWGCWC	1 cut(s)	22
AlwI	GGATC	3 cut(s)	527, 558, 573
AlwNI	CAGNNNCTG	1 cut(s)	559
AoxI	GGCC	2 cut(s)	402, 598
ApeKI	GCWGC	3 cut(s)	83, 512, 627
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	4, 598
AsuII	TTCGAA	1 cut(s)	271
AsuNHI	GCTAGC	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	22
BarI	GAAGNNNNNNTAC	2 cut(s)	306, 338
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	95, 499
BccI	CCATC	2 cut(s)	47, 327
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BciVI	GTATCC	1 cut(s)	325
BfaI	CTAG	6 cut(s)	200, 294, 326, 437, 531, 631
BfrI	CTTAAG	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	325
BglI	GCCNNNNNGGC	1 cut(s)	428
BisI	GCNGC	4 cut(s)	84, 446, 513, 628
BlsI	GCNGC	4 cut(s)	85, 447, 514, 629
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 598
BmsI	GCATC	1 cut(s)	517
BmtI	GCTAGC	1 cut(s)	440
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
Bpu10I	CCTNAGC	1 cut(s)	581
Bpu14I	TTCGAA	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	79, 118
Bse3DI	GCAATG	1 cut(s)	438
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	2 cut(s)	79, 118
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	2 cut(s)	95, 499
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	2 cut(s)	404, 600
BsiHKAI	GWGCWC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	29
BsnI	GGCC	2 cut(s)	404, 600
Bsp119I	TTCGAA	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	519, 550, 565
BspACI	CCGC	2 cut(s)	366, 445
BspANI	GGCC	2 cut(s)	404, 600
BspCNI	CTCAG	1 cut(s)	384
BspOI	GCTAGC	1 cut(s)	440
BspPI	GGATC	3 cut(s)	527, 558, 573
BspT104I	TTCGAA	1 cut(s)	271
BspTI	CTTAAG	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	79, 118
BssMI	GATC	3 cut(s)	519, 550, 565
Bst4CI	ACNGT	1 cut(s)	509
BstAFI	CTTAAG	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	271
BstC8I	GCNNGC	2 cut(s)	438, 478
BstDEI	CTNAG	2 cut(s)	392, 581
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	3 cut(s)	522, 553, 568
BstMBI	GATC	3 cut(s)	519, 550, 565
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 428, 437, 442
BstNSI	RCATGY	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	95, 499
BstX2I	RGATCY	1 cut(s)	565
BstXI	CCANNNNNNTGG	2 cut(s)	33, 412
BstYI	RGATCY	1 cut(s)	565
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	404, 600
BtsCI	GGATG	1 cut(s)	532
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	4 cut(s)	93, 389, 514, 560
Cac8I	GCNNGC	2 cut(s)	438, 478
CaiI	CAGNNNCTG	1 cut(s)	559
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	4, 598
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	72, 117
CviAII	CATG	4 cut(s)	124, 170, 290, 335
CviQI	GTAC	2 cut(s)	72, 117
DdeI	CTNAG	2 cut(s)	392, 581
DpnI	GATC	3 cut(s)	521, 552, 567
DpnII	GATC	3 cut(s)	519, 550, 565
Ecl136II	GAGCTC	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	20
EcoICRI	GAGCTC	1 cut(s)	20
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	22
FaeI	CATG	4 cut(s)	127, 173, 293, 338
FaiI	YATR	9 cut(s)	101, 121, 125, 153, 171, 240, 291, 336, 350
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FatI	CATG	4 cut(s)	123, 169, 289, 334
Fnu4HI	GCNGC	4 cut(s)	84, 446, 513, 628
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	4 cut(s)	84, 446, 513, 628
FspBI	CTAG	6 cut(s)	200, 294, 326, 437, 531, 631
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	4 cut(s)	84, 446, 513, 628
HaeIII	GGCC	2 cut(s)	404, 600
HgaI	GACGC	1 cut(s)	482
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	127, 173, 293, 338
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	2 cut(s)	263, 539
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	1 cut(s)	472
Hpy99I	CGWCG	1 cut(s)	491
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4V	TGCA	5 cut(s)	103, 173, 389, 515, 592
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 428, 437, 442
HpyF3I	CTNAG	2 cut(s)	392, 581
Hsp92II	CATG	4 cut(s)	127, 173, 293, 338
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	519, 550, 565
LmnI	GCTCC	2 cut(s)	25, 343
LpnPI	CCDG	9 cut(s)	60, 64, 99, 235, 394, 413, 533, 545, 554
Lsp1109I	GCAGC	2 cut(s)	95, 499
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	6 cut(s)	200, 294, 326, 437, 531, 631
MalI	GATC	3 cut(s)	521, 552, 567
MboI	GATC	3 cut(s)	519, 550, 565
MboII	GAAGA	3 cut(s)	52, 266, 314
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	4 cut(s)	33, 187, 291, 394
MseI	TTAA	3 cut(s)	9, 45, 224
MslI	CAYNNNNRTG	1 cut(s)	31
MspCI	CTTAAG	1 cut(s)	8
MwoI	GCNNNNNNNGC	4 cut(s)	170, 428, 437, 442
NdeII	GATC	3 cut(s)	519, 550, 565
NheI	GCTAGC	1 cut(s)	436
NlaIII	CATG	4 cut(s)	127, 173, 293, 338
NspI	RCATGY	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	271
OliI	CACNNNNGTG	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	4 cut(s)	85, 447, 514, 629
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	22
PspPI	GGNCC	2 cut(s)	4, 598
PstNI	CAGNNNCTG	1 cut(s)	559
PsuI	RGATCY	1 cut(s)	565
RsaI	GTAC	2 cut(s)	73, 118
RsaNI	GTAC	2 cut(s)	72, 117
RseI	CAYNNNNRTG	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	22
SaqAI	TTAA	3 cut(s)	9, 45, 224
SatI	GCNGC	4 cut(s)	84, 446, 513, 628
Sau3AI	GATC	3 cut(s)	519, 550, 565
Sau96I	GGNCC	2 cut(s)	4, 598
SchI	GAGTC	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	7 cut(s)	22, 145, 222, 236, 334, 442, 632
SfaNI	GCATC	1 cut(s)	517
SfuI	TTCGAA	1 cut(s)	271
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	2 cut(s)	366, 445
SspMI	CTAG	6 cut(s)	200, 294, 326, 437, 531, 631
SstI	GAGCTC	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	509
TaqI	TCGA	1 cut(s)	271
TasI	AATT	1 cut(s)	225
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	3 cut(s)	9, 45, 224
Tru9I	TTAA	3 cut(s)	9, 45, 224
TscAI	CASTG	4 cut(s)	93, 396, 514, 560
TseI	GCWGC	3 cut(s)	83, 512, 627
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	532
TspRI	CASTG	4 cut(s)	93, 396, 514, 560
Vha464I	CTTAAG	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	27
XceI	RCATGY	1 cut(s)	173
XspI	CTAG	6 cut(s)	200, 294, 326, 437, 531, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.