Rh5CG568500

Protein NRT1 PTR FAMILY 7.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005709
Physical Location & Seq
Forward (+)
80453205 .. 80456974
3770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG568500.1

Sequence Viewer

Length: 2091 bp
ATGATGACAGGAAACAACAACAAAGATGTTGCAGAATCATCAGAAGTTCTGAATAGAAGCTCTAATGACATTGAACAGAAGAGAAACTCGCACGAAAACAAACAGCAGAGTAATTTTCATGAAATTCAATTGAAGAAACACTCTCATGATAGTACTGAAGAGAAAAGGGACTCACATGATACTGAAGAGAAAAGGGACTCACATGATACTGAAGAGAAAAGGGACTCACATGATACTGAAGAGAATAGGAACTCTCACGGTACTGAAGAGAAAACCAACTCCAACTCTCATGATATTGAAGAGAAGACCAACTCTCATGAAAATGAAGGGAAGATCGACTCCCATGAAGGTGATGAACCACCTGAGAAAGGGACAATCACTACTAGAAGTCCCAATGCACCAAGCCCTATTAGAAAGAGAAGAGGAGGATGGAAACTTGCAATTCTCTTGCTAGCAAACCAAGGCCTAGCAACACTAGCTTTCTTTGGTGTTGGTGTGAACTTGGTTTTGTTTCTAGTCAGAGTTCTTGAACAATCAAATGCCGTAGCGGCCAACAATGTTAGCAAGTGGACTGGAACAGTTTATCTGTTCTCTCTGGTTGGAGCTTTCCTCAGCGATTCCTATTGGGGCCGTTACTTAACCTGTGCCGTCTTTCAGGTCTTCTTTGTAATGGGCTTGGGGCTAATGTCACTTACATCTTGGCTCTTTCTGATCCATCCATCTGGTTGTGGCGATGGAGAAAAACTTTGCAATCCCCCATCCAAAGCTGGTGTTATTCTTTTTTACCTATCAATATATTTAGTGGCATTTGGATATGGTGGTCACCAACCTACTATAGCAACATTTGGAGCGGACCAATTTGATGAGGCAGATCCTGAACAGCAAAGTTCCAGAGCAGTTTTCTTCTCTTATTTCTACTTTGCACTCAACGTGGGATGTCTCTTCTCAAACACCATCTTAGTTTATTATGAGGATCATGGATATTGGAATATAGGGTTTCTGGTCTCATTAGGGTCAGCAGTCATAGCCCTATTGTCCTATTTGATGGGATCAAGTCGGTATCGGTATATAAAACCATGTGGCAACCCTTTACCTCGTGTTGCTCAGGTATTTGTGGCTGCTGCTAGAAAATGGCATGTTGTTCCAGCTGATCCAGATAATCTGTATGAGATGGAAGGAAAAGAATCTGCAATCAAAGGGAGTAGAAAGATTCTTCACAGTAATGAAATTGAGTTTTTGGACAAGGCAGCAACGATAACGGACAGGGATCAAAATGAGAAAAACCCTTGGAGGCTTTGTACTGTAACCCAAGTCGAAGAAGCCAAATGCGTCCTGAAACTTCTACCTATATGGCTTTGCACTATTATTTACTCAGTGATCTTCACACAAATGGCTTCTCTATTCGTAGAGCAAGGTGATGTGATGCATGCCCAAATCGGAAATTTTCATATCCCAGCTGCTAGCATGTCAGCTTTTGACATATGCAGCGTCCTAATCTCCACCGGAATTTACCGCCAAGTCCTTGTGCCTTTAGCTGGAAGATTAAGTGGAAACCCTAAAGGGTTATCAGAGCTTCAGAGAATGGGAATTGGACTAATTATTGGAATGTTAGCAATGGTTGCAGCTGGTGCCACGGAGATTGCAAGGCTCCAATATGTGGAGCCGGGTAAGAAAGTAAGCTCTTTGAGCATATTTTGGCAAATTCCACAATATGTTTTTGTTGGTGTTTCAGAAGTTTTCATGTATGTTGGTCAACTTGAGTTCTTTAATGGAGAAGCACCTGATGGGATAAAAAGCTTTGGAAGTTCGTTGTGCATGGCTTCAATCTCTCTTGGGAATTATGTGAGCAGTATGCTAGTTGCTATGGTGATGGGGATTACAGCTAGAGGTTCAGACCCAGGTTGGATTCCAAATAATTTGAATGAAGGTCATATGGACAGGTTCTACTTCTTGATTGCAGGATTAACAGTTCTCGACTTTGCCTTTTATTTATATCTTGCTAAGAGGTACAAGTGCATTAACCTTGAAGGCCCTGAGAATGAAGAGGTTAGTCAAGAAAGTCAGGATGATGAGGTGCTCAGAAGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

696

Amino Acids

77.47

Weight (kDa)

5.46

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 214 - 635 9.9e-89 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1628
AccB7I CCANNNNNTGG 1 cut(s) 1657
AccBSI CCGCTC 1 cut(s) 851
AciI CCGC 3 cut(s) 548, 851, 1513
AclWI GGATC 6 cut(s) 706, 866, 981, 1057, 1145, 1275
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 4 cut(s) 123, 1441, 1506, 1701
AcuI CTGAAG 6 cut(s) 177, 204, 231, 258, 285, 1559
AfaI GTAC 4 cut(s) 154, 262, 1300, 2009
AfiI CCNNNNNNNGG 3 cut(s) 368, 1535, 1657
AgsI TTSAA 8 cut(s) 74, 128, 133, 299, 530, 1824, 1921, 2027
AjnI CCWGG 1 cut(s) 1897
AloI GAACNNNNNNTCC 2 cut(s) 1953, 1985
Alw21I GWGCWC 1 cut(s) 2079
Alw26I GTCTC 2 cut(s) 944, 1009
AlwI GGATC 6 cut(s) 706, 866, 981, 1057, 1145, 1275
AlwNI CAGNNNCTG 1 cut(s) 875
AoxI GGCC 4 cut(s) 463, 549, 628, 2029
ApeKI GCWGC 6 cut(s) 1118, 1121, 1247, 1457, 1485, 1622
ApoI RAATTY 4 cut(s) 123, 1441, 1506, 1701
AspS9I GGNCC 3 cut(s) 628, 853, 2030
AsuC2I CCSGG 1 cut(s) 1665
AsuHPI GGTGA 4 cut(s) 362, 815, 1427, 1879
AsuNHI GCTAGC 2 cut(s) 451, 1460
AvaII GGWCC 1 cut(s) 853
BanI GGYRCC 1 cut(s) 1628
BauI CACGAG 1 cut(s) 1095
BbsI GAAGAC 2 cut(s) 311, 652
Bbv12I GWGCWC 1 cut(s) 2079
BbvCI CCTCAGC 1 cut(s) 611
BbvI GCAGC 6 cut(s) 1105, 1108, 1259, 1444, 1497, 1634
BceAI ACGGC 3 cut(s) 527, 615, 632
BciT130I CCWGG 1 cut(s) 1899
BcnI CCSGG 1 cut(s) 1665
BcoDI GTCTC 2 cut(s) 944, 1009
BfaI CTAG 9 cut(s) 384, 452, 467, 476, 515, 1125, 1461, 1856, 1884
BfmI CTRYAG 1 cut(s) 834
BglI GCCNNNNNGGC 1 cut(s) 548
BisI GCNGC 7 cut(s) 549, 1119, 1122, 1248, 1458, 1486, 1623
BlsI GCNGC 7 cut(s) 550, 1120, 1123, 1249, 1459, 1487, 1624
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 2 cut(s) 1665, 1899
Bme18I GGWCC 1 cut(s) 853
BmgT120I GGNCC 3 cut(s) 628, 853, 2030
BmiI GGNNCC 4 cut(s) 629, 1630, 1649, 1662
BmrFI CCNGG 2 cut(s) 1665, 1899
BmsI GCATC 1 cut(s) 1413
BmtI GCTAGC 2 cut(s) 455, 1464
BpiI GAAGAC 2 cut(s) 311, 652
BplI GAGNNNNNCTC 2 cut(s) 594, 626
Bpu10I CCTNAGC 2 cut(s) 611, 1104
BpuEI CTTGAG 1 cut(s) 1778
BpuMI CCSGG 1 cut(s) 1665
BsaI GGTCTC 1 cut(s) 1009
BsaJI CCNNGG 4 cut(s) 460, 1286, 1632, 1897
BsaWI WCCGGW 1 cut(s) 1502
BsaXI ACNNNNNCTCC 2 cut(s) 1282, 1312
Bsc4I CCNNNNNNNGG 3 cut(s) 368, 1535, 1657
Bse1I ACTGG 1 cut(s) 577
Bse3DI GCAATG 1 cut(s) 1620
BseBI CCWGG 1 cut(s) 1899
BseDI CCNNGG 4 cut(s) 460, 1286, 1632, 1897
BseGI GGATG 5 cut(s) 434, 715, 758, 941, 2071
BseLI CCNNNNNNNGG 3 cut(s) 368, 1535, 1657
BseMI GCAATG 1 cut(s) 1620
BseMII CTCAG 5 cut(s) 354, 625, 1118, 1386, 2025
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 1 cut(s) 438
BseXI GCAGC 6 cut(s) 1105, 1108, 1259, 1444, 1497, 1634
BseYI CCCAGC 1 cut(s) 1453
BshFI GGCC 4 cut(s) 465, 551, 630, 2031
BshNI GGYRCC 1 cut(s) 1628
BsiHKAI GWGCWC 1 cut(s) 2079
BsiSI CCGG 2 cut(s) 1503, 1664
BslFI GGGAC 5 cut(s) 182, 209, 236, 375, 385
BslI CCNNNNNNNGG 3 cut(s) 368, 1535, 1657
BsmAI GTCTC 2 cut(s) 944, 1009
BsmFI GGGAC 5 cut(s) 182, 209, 236, 375, 385
BsnI GGCC 4 cut(s) 465, 551, 630, 2031
Bso31I GGTCTC 1 cut(s) 1009
Bsp1286I GDGCHC 1 cut(s) 2079
Bsp143I GATC 8 cut(s) 333, 711, 871, 973, 1049, 1150, 1267, 1377
BspACI CCGC 3 cut(s) 548, 851, 1513
BspANI GGCC 4 cut(s) 465, 551, 630, 2031
BspCNI CTCAG 6 cut(s) 355, 624, 1117, 1385, 2026, 2091
BspHI TCATGA 4 cut(s) 118, 145, 289, 316
BspLI GGNNCC 4 cut(s) 629, 1630, 1649, 1662
BspOI GCTAGC 2 cut(s) 455, 1464
BspPI GGATC 6 cut(s) 706, 866, 981, 1057, 1145, 1275
BspT107I GGYRCC 1 cut(s) 1628
BspTNI GGTCTC 1 cut(s) 1009
BsrBI CCGCTC 1 cut(s) 851
BsrDI GCAATG 1 cut(s) 1620
BsrI ACTGG 1 cut(s) 577
BssECI CCNNGG 4 cut(s) 460, 1286, 1632, 1897
BssMI GATC 8 cut(s) 333, 711, 871, 973, 1049, 1150, 1267, 1377
BssSI CACGAG 1 cut(s) 1095
BssT1I CCWWGG 2 cut(s) 460, 1286
Bst2BI CACGAG 1 cut(s) 1095
Bst2UI CCWGG 1 cut(s) 1899
Bst4CI ACNGT 5 cut(s) 260, 580, 1220, 1303, 1969
BstAPI GCANNNNNTGC 2 cut(s) 1619, 1628
BstC8I GCNNGC 3 cut(s) 453, 1428, 1462
BstDEI CTNAG 8 cut(s) 363, 611, 958, 1104, 1372, 2001, 2034, 2078
BstDSI CCRYGG 1 cut(s) 1632
BstEII GGTNACC 1 cut(s) 821
BstENI CCTNNNNNAGG 1 cut(s) 366
BstF5I GGATG 5 cut(s) 434, 715, 758, 941, 2071
BstKTI GATC 8 cut(s) 336, 714, 874, 976, 1052, 1153, 1270, 1380
BstMAI GTCTC 2 cut(s) 944, 1009
BstMBI GATC 8 cut(s) 333, 711, 871, 973, 1049, 1150, 1267, 1377
BstMWI GCNNNNNNNGC 6 cut(s) 476, 548, 1025, 1619, 1628, 1686
BstNI CCWGG 1 cut(s) 1899
BstNSI RCATGY 3 cut(s) 1139, 1430, 1468
BstPI GGTNACC 1 cut(s) 821
BstSCI CCNGG 2 cut(s) 1663, 1897
BstSFI CTRYAG 1 cut(s) 834
BstV1I GCAGC 6 cut(s) 1105, 1108, 1259, 1444, 1497, 1634
BstV2I GAAGAC 2 cut(s) 311, 652
BstX2I RGATCY 1 cut(s) 871
BstXI CCANNNNNNTGG 1 cut(s) 722
BstYI RGATCY 1 cut(s) 871
BsuRI GGCC 4 cut(s) 465, 551, 630, 2031
BtgI CCRYGG 1 cut(s) 1632
BtgZI GCGATG 1 cut(s) 747
BtsCI GGATG 5 cut(s) 434, 715, 758, 941, 2071
BtsIMutI CAGTG 1 cut(s) 1380
Cac8I GCNNGC 3 cut(s) 453, 1428, 1462
CaiI CAGNNNCTG 1 cut(s) 875
CciI TCATGA 4 cut(s) 118, 145, 289, 316
Cfr13I GGNCC 3 cut(s) 628, 853, 2030
CseI GACGC 2 cut(s) 1318, 1477
Csp6I GTAC 4 cut(s) 153, 261, 1299, 2008
CspCI CAANNNNNGTGG 2 cut(s) 1621, 1656
CviQI GTAC 4 cut(s) 153, 261, 1299, 2008
DdeI CTNAG 8 cut(s) 363, 611, 958, 1104, 1372, 2001, 2034, 2078
DpnI GATC 8 cut(s) 335, 713, 873, 975, 1051, 1152, 1269, 1379
DpnII GATC 8 cut(s) 333, 711, 871, 973, 1049, 1150, 1267, 1377
EaeI YGGCCR 1 cut(s) 549
Eco130I CCWWGG 2 cut(s) 460, 1286
Eco147I AGGCCT 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 1009
Eco47I GGWCC 1 cut(s) 853
Eco57I CTGAAG 6 cut(s) 177, 204, 231, 258, 285, 1559
Eco91I GGTNACC 1 cut(s) 821
EcoNI CCTNNNNNAGG 1 cut(s) 366
EcoO109I RGGNCCY 1 cut(s) 2030
EcoO65I GGTNACC 1 cut(s) 821
EcoRII CCWGG 1 cut(s) 1897
EcoT14I CCWWGG 2 cut(s) 460, 1286
EcoT22I ATGCAT 1 cut(s) 1428
ErhI CCWWGG 2 cut(s) 460, 1286
FaqI GGGAC 5 cut(s) 182, 209, 236, 375, 385
FauNDI CATATG 2 cut(s) 1481, 1932
Fnu4HI GCNGC 7 cut(s) 549, 1119, 1122, 1248, 1458, 1486, 1623
FokI GGATG 5 cut(s) 441, 702, 745, 948, 2078
Fsp4HI GCNGC 7 cut(s) 549, 1119, 1122, 1248, 1458, 1486, 1623
FspBI CTAG 9 cut(s) 384, 452, 467, 476, 515, 1125, 1461, 1856, 1884
GluI GCNGC 7 cut(s) 549, 1119, 1122, 1248, 1458, 1486, 1623
GsaI CCCAGC 1 cut(s) 1457
HaeIII GGCC 4 cut(s) 465, 551, 630, 2031
HapII CCGG 2 cut(s) 1503, 1664
HgaI GACGC 2 cut(s) 1318, 1477
HincII GTYRAC 1 cut(s) 1754
HindII GTYRAC 1 cut(s) 1754
HindIII AAGCTT 1 cut(s) 1795
HinfI GANTC 9 cut(s) 35, 170, 197, 224, 338, 617, 1184, 1210, 1906
HpaII CCGG 2 cut(s) 1503, 1664
HphI GGTGA 4 cut(s) 362, 815, 1427, 1879
Hpy166II GTNNAC 3 cut(s) 499, 570, 1754
Hpy8I GTNNAC 3 cut(s) 499, 570, 1754
HpyAV CCTTC 5 cut(s) 320, 341, 1169, 1919, 2021
HpyCH4III ACNGT 5 cut(s) 260, 580, 1220, 1303, 1969
HpyCH4IV ACGT 1 cut(s) 930
HpyF10VI GCNNNNNNNGC 6 cut(s) 476, 548, 1025, 1619, 1628, 1686
HpyF3I CTNAG 8 cut(s) 363, 611, 958, 1104, 1372, 2001, 2034, 2078
HpySE526I ACGT 1 cut(s) 930
Kzo9I GATC 8 cut(s) 333, 711, 871, 973, 1049, 1150, 1267, 1377
LmnI GCTCC 4 cut(s) 602, 848, 1653, 1660
Lsp1109I GCAGC 6 cut(s) 1105, 1108, 1259, 1444, 1497, 1634
LweI GCATC 1 cut(s) 1413
MaeI CTAG 9 cut(s) 384, 452, 467, 476, 515, 1125, 1461, 1856, 1884
MaeII ACGT 1 cut(s) 930
MaeIII GTNAC 4 cut(s) 632, 687, 821, 1303
MalI GATC 8 cut(s) 335, 713, 873, 975, 1051, 1152, 1269, 1379
MbiI CCGCTC 1 cut(s) 851
MboI GATC 8 cut(s) 333, 711, 871, 973, 1049, 1150, 1267, 1377
MfeI CAATTG 1 cut(s) 128
MflI RGATCY 1 cut(s) 871
MhlI GDGCHC 1 cut(s) 2079
MlyI GAGTC 4 cut(s) 164, 191, 218, 332
MmeI TCCRAC 3 cut(s) 306, 580, 1883
Mph1103I ATGCAT 1 cut(s) 1428
MseI TTAA 5 cut(s) 638, 1544, 1767, 1964, 2019
MslI CAYNNNNRTG 5 cut(s) 144, 321, 348, 1221, 1388
MspA1I CMGCKG 3 cut(s) 1148, 1457, 1625
MspI CCGG 2 cut(s) 1503, 1664
MspR9I CCNGG 2 cut(s) 1665, 1899
MunI CAATTG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 1899
MwoI GCNNNNNNNGC 6 cut(s) 476, 548, 1025, 1619, 1628, 1686
NciI CCSGG 1 cut(s) 1665
NdeI CATATG 2 cut(s) 1481, 1932
NdeII GATC 8 cut(s) 333, 711, 871, 973, 1049, 1150, 1267, 1377
NheI GCTAGC 2 cut(s) 451, 1460
NlaIV GGNNCC 4 cut(s) 629, 1630, 1649, 1662
NmuCI GTSAC 2 cut(s) 687, 821
NsiI ATGCAT 1 cut(s) 1428
NspI RCATGY 3 cut(s) 1139, 1430, 1468
PaeI GCATGC 1 cut(s) 1430
PagI TCATGA 4 cut(s) 118, 145, 289, 316
PceI AGGCCT 1 cut(s) 465
PfeI GAWTC 5 cut(s) 35, 617, 1184, 1210, 1906
PflMI CCANNNNNTGG 1 cut(s) 1657
PkrI GCNGC 7 cut(s) 550, 1120, 1123, 1249, 1459, 1487, 1624
PleI GAGTC 4 cut(s) 164, 191, 218, 332
PpsI GAGTC 4 cut(s) 164, 191, 218, 332
Psp6I CCWGG 1 cut(s) 1897
PspEI GGTNACC 1 cut(s) 821
PspFI CCCAGC 1 cut(s) 1453
PspGI CCWGG 1 cut(s) 1897
PspN4I GGNNCC 4 cut(s) 629, 1630, 1649, 1662
PspPI GGNCC 3 cut(s) 628, 853, 2030
PstNI CAGNNNCTG 1 cut(s) 875
PsuI RGATCY 1 cut(s) 871
PvuII CAGCTG 3 cut(s) 1148, 1457, 1625
RsaI GTAC 4 cut(s) 154, 262, 1300, 2009
RsaNI GTAC 4 cut(s) 153, 261, 1299, 2008
RseI CAYNNNNRTG 5 cut(s) 144, 321, 348, 1221, 1388
SaqAI TTAA 5 cut(s) 638, 1544, 1767, 1964, 2019
SatI GCNGC 7 cut(s) 549, 1119, 1122, 1248, 1458, 1486, 1623
Sau3AI GATC 8 cut(s) 333, 711, 871, 973, 1049, 1150, 1267, 1377
Sau96I GGNCC 3 cut(s) 628, 853, 2030
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 4 cut(s) 164, 191, 218, 332
ScrFI CCNGG 2 cut(s) 1665, 1899
SduI GDGCHC 1 cut(s) 2079
SfaNI GCATC 1 cut(s) 1413
SfcI CTRYAG 1 cut(s) 834
SinI GGWCC 1 cut(s) 853
SmiMI CAYNNNNRTG 5 cut(s) 144, 321, 348, 1221, 1388
SmlI CTYRAG 1 cut(s) 1757
SmoI CTYRAG 1 cut(s) 1757
SphI GCATGC 1 cut(s) 1430
SseBI AGGCCT 1 cut(s) 465
SsiI CCGC 3 cut(s) 548, 851, 1513
SspMI CTAG 9 cut(s) 384, 452, 467, 476, 515, 1125, 1461, 1856, 1884
StuI AGGCCT 1 cut(s) 465
StyD4I CCNGG 2 cut(s) 1663, 1897
StyI CCWWGG 2 cut(s) 460, 1286
TaaI ACNGT 5 cut(s) 260, 580, 1220, 1303, 1969
TaiI ACGT 1 cut(s) 933
TaqI TCGA 3 cut(s) 336, 1314, 1974
TatI WGTACW 2 cut(s) 152, 1298
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 5 cut(s) 35, 617, 1184, 1210, 1906
Tru1I TTAA 5 cut(s) 638, 1544, 1767, 1964, 2019
Tru9I TTAA 5 cut(s) 638, 1544, 1767, 1964, 2019
TscAI CASTG 1 cut(s) 1380
TseFI GTSAC 2 cut(s) 687, 821
TseI GCWGC 6 cut(s) 1118, 1121, 1247, 1457, 1485, 1622
Tsp45I GTSAC 2 cut(s) 687, 821
TspGWI ACGGA 2 cut(s) 1274, 1649
TspRI CASTG 1 cut(s) 1380
Van91I CCANNNNNTGG 1 cut(s) 1657
VpaK11BI GGWCC 1 cut(s) 853
XagI CCTNNNNNAGG 1 cut(s) 366
XapI RAATTY 4 cut(s) 123, 1441, 1506, 1701
XceI RCATGY 3 cut(s) 1139, 1430, 1468
XspI CTAG 9 cut(s) 384, 452, 467, 476, 515, 1125, 1461, 1856, 1884
ZrmI AGTACT 1 cut(s) 154
Zsp2I ATGCAT 1 cut(s) 1428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.