Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8055184.1

Orthogroup ID

OG0014973

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 518

Gene Structure 517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8055184.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 517 bp

atggtgcctgctatcaccttagatccaagctatttcaagcaaaagaccaacaacacagtcgaccttcatcaccagcatgagaacattgtgatcgaggaaatcaaagggcttatcaaagtgtacaaagacggacatgtggagagaccgcagatcgtcccgtgcgtcacggccgctgtggccgatccggagttaggcgtgacatccatggacatagtcattgacaggttcacaaatgtttcctcacgtttctatgttccgaaacaccacgggatgaattcgatgaagaagcttcctttgctggtgtattttcacggaggtgggttttgcgctggctccaccgcttggagttgttaccatgaatttttggcaaagctagcggtcaaagctggttgcgtaatcatgtcggtaaattaccggttggcacccgaacaccctcttccggcggcttatgaagatggactcagagcccttgtgtggctaaaacaacaagctttttgtgaacgtggtggggaggaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

172

Amino Acids

19.21

Weight (kDa)

6.75

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68620
fragaria_vesca	FvH4_4g27710
malus_domestica	MD16G1045600.v1.1
prunus_persica	Prupe.1G307700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0435571
rosa_laevigata	RLG00000006581
rosa_multiflora	Rmu_co8055184.1_g000001 Rmu_sc0001940.1_g000043 Rmu_sc0006697.1_g000007
rosa_roxburghii	Rroxscaffold_5G00376800
rosa_rugosa	Rorug04G0286700.1
rosa_samantha	Rh4AG342100 Rh4BG350300 Rh4CG365000 Rh4DG344600
rosa_wichuraiana	Rw4G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 421
AccB7I	CCANNNNNTGG	1 cut(s)	342
AccI	GTMKAC	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	5 cut(s)	146, 171, 339, 377, 443
AclWI	GGATC	2 cut(s)	17, 176
AcoI	YGGCCR	2 cut(s)	168, 177
AcsI	RAATTY	2 cut(s)	274, 359
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	4 cut(s)	191, 342, 439, 474
AflIII	ACRYGT	1 cut(s)	133
AgeI	ACCGGT	1 cut(s)	414
AgsI	TTSAA	1 cut(s)	37
AleI	CACNNNNGTG	1 cut(s)	315
AluBI	AGCT	5 cut(s)	30, 289, 373, 386, 491
AluI	AGCT	5 cut(s)	30, 289, 373, 386, 491
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	2 cut(s)	17, 176
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	2 cut(s)	168, 177
ApoI	RAATTY	2 cut(s)	274, 359
AsiGI	ACCGGT	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	7, 62
AsuNHI	GCTAGC	1 cut(s)	373
BanI	GGYRCC	2 cut(s)	4, 421
BanII	GRGCYC	1 cut(s)	469
BccI	CCATC	1 cut(s)	449
BceAI	ACGGC	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	1 cut(s)	374
BglI	GCCNNNNNGGC	1 cut(s)	176
BisI	GCNGC	2 cut(s)	171, 444
BlsI	GCNGC	2 cut(s)	172, 445
BmiI	GGNNCC	3 cut(s)	6, 334, 423
BmtI	GCTAGC	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	204, 265
BsaWI	WCCGGW	2 cut(s)	184, 414
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 342, 439, 474
Bse118I	RCCGGY	1 cut(s)	414
BseAI	TCCGGA	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	204, 265
BseGI	GGATG	2 cut(s)	200, 276
BseLI	CCNNNNNNNGG	4 cut(s)	191, 342, 439, 474
BseMII	CTCAG	1 cut(s)	475
BseX3I	CGGCCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	170, 179
BshNI	GGYRCC	2 cut(s)	4, 421
BshTI	ACCGGT	1 cut(s)	414
BsiEI	CGRYCG	1 cut(s)	171
BsiSI	CCGG	3 cut(s)	185, 415, 440
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	4 cut(s)	191, 342, 439, 474
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	2 cut(s)	170, 179
Bso31I	GGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp13I	TCCGGA	1 cut(s)	184
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	4 cut(s)	22, 90, 150, 181
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	5 cut(s)	146, 171, 339, 377, 443
BspANI	GGCC	2 cut(s)	170, 179
BspCNI	CTCAG	1 cut(s)	474
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	6, 334, 423
BspOI	GCTAGC	1 cut(s)	377
BspPI	GGATC	2 cut(s)	17, 176
BspT107I	GGYRCC	2 cut(s)	4, 421
BspTNI	GGTCTC	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	414
BsrGI	TGTACA	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	204, 265
BssMI	GATC	4 cut(s)	22, 90, 150, 181
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	441
BstAUI	TGTACA	1 cut(s)	120
BstC8I	GCNNGC	3 cut(s)	9, 331, 375
BstDEI	CTNAG	2 cut(s)	19, 461
BstDSI	CCRYGG	2 cut(s)	204, 265
BstF5I	GGATG	2 cut(s)	200, 276
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	4 cut(s)	25, 93, 153, 184
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	4 cut(s)	22, 90, 150, 181
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 295, 374, 383
BstNSI	RCATGY	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BstZI	CGGCCG	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	170, 179
BtgI	CCRYGG	2 cut(s)	204, 265
BtsCI	GGATG	2 cut(s)	200, 276
Cac8I	GCNNGC	3 cut(s)	9, 331, 375
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	414
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	121
CspAI	ACCGGT	1 cut(s)	414
CviAII	CATG	5 cut(s)	77, 134, 205, 356, 400
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	19, 461
DpnI	GATC	4 cut(s)	24, 92, 152, 183
DpnII	GATC	4 cut(s)	22, 90, 150, 181
EaeI	YGGCCR	2 cut(s)	168, 177
EagI	CGGCCG	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
EclXI	CGGCCG	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	469
Eco31I	GGTCTC	1 cut(s)	136
Eco52I	CGGCCG	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	5 cut(s)	80, 137, 208, 359, 403
FaiI	YATR	8 cut(s)	78, 135, 206, 212, 252, 357, 401, 450
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	5 cut(s)	76, 133, 204, 355, 399
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	171, 444
FokI	GGATG	2 cut(s)	187, 283
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	2 cut(s)	171, 444
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	2 cut(s)	171, 444
HaeIII	GGCC	2 cut(s)	170, 179
HapII	CCGG	3 cut(s)	185, 415, 440
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	5 cut(s)	80, 137, 208, 359, 403
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HindIII	AAGCTT	2 cut(s)	287, 489
HinfI	GANTC	1 cut(s)	459
HpaII	CCGG	3 cut(s)	185, 415, 440
HphI	GGTGA	2 cut(s)	7, 62
Hpy166II	GTNNAC	4 cut(s)	61, 121, 228, 500
Hpy188I	TCNGA	2 cut(s)	258, 464
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	4 cut(s)	61, 121, 228, 500
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	2 cut(s)	244, 502
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 295, 374, 383
HpyF3I	CTNAG	2 cut(s)	19, 461
HpySE526I	ACGT	2 cut(s)	244, 502
Hsp92II	CATG	5 cut(s)	80, 137, 208, 359, 403
HspAI	GCGC	1 cut(s)	327
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	22, 90, 150, 181
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	9 cut(s)	21, 86, 198, 208, 284, 315, 372, 428, 453
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	2 cut(s)	244, 502
MaeIII	GTNAC	3 cut(s)	163, 196, 350
MalI	GATC	4 cut(s)	24, 92, 152, 183
MboI	GATC	4 cut(s)	22, 90, 150, 181
MboII	GAAGA	3 cut(s)	295, 428, 464
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	3 cut(s)	274, 359, 409
MlyI	GAGTC	1 cut(s)	453
MnlI	CCTC	5 cut(s)	88, 250, 308, 444, 505
MroI	TCCGGA	1 cut(s)	184
MslI	CAYNNNNRTG	2 cut(s)	75, 315
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	3 cut(s)	185, 415, 440
MwoI	GCNNNNNNNGC	4 cut(s)	176, 295, 374, 383
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	4 cut(s)	22, 90, 150, 181
NheI	GCTAGC	1 cut(s)	373
NlaIII	CATG	5 cut(s)	80, 137, 208, 359, 403
NlaIV	GGNNCC	3 cut(s)	6, 334, 423
NmuCI	GTSAC	2 cut(s)	163, 196
NspI	RCATGY	1 cut(s)	137
OliI	CACNNNNGTG	1 cut(s)	315
PciI	ACATGT	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PflFI	GACNNNGTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	342
PinAI	ACCGGT	1 cut(s)	414
PkrI	GCNGC	2 cut(s)	172, 445
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
PscI	ACATGT	1 cut(s)	133
PspN4I	GGNNCC	3 cut(s)	6, 334, 423
PsuI	RGATCY	1 cut(s)	22
PsyI	GACNNNGTC	1 cut(s)	212
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	2 cut(s)	75, 315
SalI	GTCGAC	1 cut(s)	59
SatI	GCNGC	2 cut(s)	171, 444
Sau3AI	GATC	4 cut(s)	22, 90, 150, 181
SchI	GAGTC	1 cut(s)	453
SduI	GDGCHC	1 cut(s)	469
SfiI	GGCCNNNNNGGCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	2 cut(s)	75, 315
Sse9I	AATT	3 cut(s)	274, 359, 409
SsiI	CCGC	5 cut(s)	146, 171, 339, 377, 443
SspMI	CTAG	1 cut(s)	374
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	2 cut(s)	247, 505
TaqI	TCGA	3 cut(s)	60, 93, 278
TasI	AATT	3 cut(s)	274, 359, 409
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	2 cut(s)	173, 446
TseFI	GTSAC	2 cut(s)	163, 196
Tsp45I	GTSAC	2 cut(s)	163, 196
TspDTI	ATGAA	5 cut(s)	56, 287, 296, 372, 465
TspGWI	ACGGA	2 cut(s)	144, 327
Tth111I	GACNNNGTC	1 cut(s)	212
Van91I	CCANNNNNTGG	1 cut(s)	342
XapI	RAATTY	2 cut(s)	274, 359
XceI	RCATGY	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.