Rh4CG365000

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0014973
Physical Location & Seq
Reverse (-)
62083441 .. 62083791
351 bp
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UTR
Exon/CDS
Intron
Rh4CG365000.1

Sequence Viewer

Length: 351 bp
ATGGTGCAGCCACGTCACTCGGTGTTGAATCTGGCAGCTTCGGATACCTACTGGAGATTGGCACTGCCGGCCGGTTCCAACCGCGACCATCCATGGTGCAACCCTTTGGCTAACGGCTCGTGTTTCGGTTCGGATAGCGTGGCGATGATGGTGTGTATTTCGGAGTCGGACATATTGAAAGATAGGGAGTTAGAGTTTTGTGCTGCAATCGCTAGAGCAGGGAAGAACGTGGAGACTGTGGTGTACAGAGGTGTAGGGCACGCGTTTCAGGTACTAGATAAGTCTATGCTATCACAAACTCGATGCCATGAGATGATAGCTCATATTAAGGCCTTTGTTGAAAATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

116

Amino Acids

12.82

Weight (kDa)

6.49

Isoelectric Point (pI)

20.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 7 - 90 2.4e-15 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014973)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68620
fragaria_vesca FvH4_4g27710
malus_domestica MD16G1045600.v1.1
prunus_persica Prupe.1G307700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435571
rosa_laevigata RLG00000006581
rosa_multiflora Rmu_co8055184.1_g000001 Rmu_sc0001940.1_g000043 Rmu_sc0006697.1_g000007
rosa_roxburghii Rroxscaffold_5G00376800
rosa_rugosa Rorug04G0286700.1
rosa_samantha Rh4AG342100 Rh4BG350300 Rh4CG365000 Rh4DG344600
rosa_wichuraiana Rw4G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 84, 263
AciI CCGC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 69
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 2 cut(s) 245, 273
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 3 cut(s) 28, 178, 341
AjiI CACGTC 1 cut(s) 14
AluBI AGCT 2 cut(s) 38, 320
AluI AGCT 2 cut(s) 38, 320
Alw26I GTCTC 1 cut(s) 227
AoxI GGCC 2 cut(s) 69, 330
ApeKI GCWGC 3 cut(s) 7, 35, 203
BaeGI GKGCMC 1 cut(s) 261
BauI CACGAG 1 cut(s) 118
BbvI GCAGC 3 cut(s) 19, 47, 190
BccI CCATC 2 cut(s) 96, 142
BceAI ACGGC 1 cut(s) 130
BciVI GTATCC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 3 cut(s) 213, 275, 349
BfuI GTATCC 1 cut(s) 37
BisI GCNGC 3 cut(s) 8, 36, 204
BlsI GCNGC 3 cut(s) 9, 37, 205
BmgBI CACGTC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bse118I RCCGGY 2 cut(s) 67, 71
Bse1I ACTGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 88
BseNI ACTGG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 261
BseX3I CGGCCG 1 cut(s) 69
BseXI GCAGC 3 cut(s) 19, 47, 190
BsgI GTGCAG 1 cut(s) 26
Bsh1236I CGCG 2 cut(s) 84, 263
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 2 cut(s) 71, 332
BsiEI CGRYCG 1 cut(s) 72
BsiSI CCGG 2 cut(s) 68, 72
BsmAI GTCTC 1 cut(s) 227
BsnI GGCC 2 cut(s) 71, 332
Bsp1286I GDGCHC 1 cut(s) 261
Bsp1407I TGTACA 1 cut(s) 243
Bsp19I CCATGG 1 cut(s) 92
BspACI CCGC 1 cut(s) 82
BspANI GGCC 2 cut(s) 71, 332
BspFNI CGCG 2 cut(s) 84, 263
BspLI GGNNCC 1 cut(s) 76
BsrFI RCCGGY 2 cut(s) 67, 71
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 1 cut(s) 56
BssAI RCCGGY 2 cut(s) 67, 71
BssECI CCNNGG 1 cut(s) 92
BssSI CACGAG 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 92
Bst2BI CACGAG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 238
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 2 cut(s) 69, 261
BstDSI CCRYGG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 88
BstFNI CGCG 2 cut(s) 84, 263
BstMAI GTCTC 1 cut(s) 227
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 2 cut(s) 68, 209
BstSLI GKGCMC 1 cut(s) 261
BstUI CGCG 2 cut(s) 84, 263
BstV1I GCAGC 3 cut(s) 19, 47, 190
BstZI CGGCCG 1 cut(s) 69
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 71, 332
BtgI CCRYGG 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 158
BtrI CACGTC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 69, 261
Cfr10I RCCGGY 2 cut(s) 67, 71
Csp6I GTAC 2 cut(s) 244, 272
CviAII CATG 2 cut(s) 93, 308
CviJI RGCY 7 cut(s) 10, 38, 71, 110, 117, 320, 332
CviKI_1 RGCY 7 cut(s) 10, 38, 71, 110, 117, 320, 332
CviQI GTAC 2 cut(s) 244, 272
DraIII CACNNNGTG 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 69
EagI CGGCCG 1 cut(s) 69
EclXI CGGCCG 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 92
Eco147I AGGCCT 1 cut(s) 332
Eco52I CGGCCG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 2 cut(s) 96, 311
FaiI YATR 5 cut(s) 94, 173, 287, 309, 324
FatI CATG 2 cut(s) 92, 307
Fnu4HI GCNGC 3 cut(s) 8, 36, 204
FokI GGATG 1 cut(s) 75
Fsp4HI GCNGC 3 cut(s) 8, 36, 204
FspBI CTAG 3 cut(s) 213, 275, 349
GluI GCNGC 3 cut(s) 8, 36, 204
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 2 cut(s) 71, 332
HapII CCGG 2 cut(s) 68, 72
Hin1II CATG 2 cut(s) 96, 311
HinfI GANTC 2 cut(s) 28, 164
HpaII CCGG 2 cut(s) 68, 72
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 4 cut(s) 43, 133, 163, 169
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 2 cut(s) 13, 228
HpyCH4V TGCA 3 cut(s) 7, 99, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 209
HpySE526I ACGT 2 cut(s) 13, 228
Hsp92II CATG 2 cut(s) 96, 311
KroI GCCGGC 1 cut(s) 67
KroNI GCCGGC 1 cut(s) 69
LpnPI CCDG 6 cut(s) 17, 37, 81, 85, 204, 254
Lsp1109I GCAGC 3 cut(s) 19, 47, 190
LweI GCATC 1 cut(s) 293
MaeI CTAG 3 cut(s) 213, 275, 349
MaeII ACGT 2 cut(s) 13, 228
MaeIII GTNAC 1 cut(s) 14
MboII GAAGA 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 261
MluI ACGCGT 1 cut(s) 261
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 2 cut(s) 102, 147
MnlI CCTC 1 cut(s) 242
MroNI GCCGGC 1 cut(s) 67
MseI TTAA 1 cut(s) 327
MspI CCGG 2 cut(s) 68, 72
MvnI CGCG 2 cut(s) 84, 263
MwoI GCNNNNNNNGC 2 cut(s) 68, 209
NaeI GCCGGC 1 cut(s) 69
NcoI CCATGG 1 cut(s) 92
NgoMIV GCCGGC 1 cut(s) 67
NlaIII CATG 2 cut(s) 96, 311
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 14
PceI AGGCCT 1 cut(s) 332
PdiI GCCGGC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 3 cut(s) 9, 37, 205
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 76
RsaI GTAC 2 cut(s) 245, 273
RsaNI GTAC 2 cut(s) 244, 272
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 3 cut(s) 8, 36, 204
SchI GAGTC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 261
SetI ASST 7 cut(s) 16, 40, 50, 231, 253, 273, 322
SfaNI GCATC 1 cut(s) 293
SseBI AGGCCT 1 cut(s) 332
SsiI CCGC 1 cut(s) 82
SspMI CTAG 3 cut(s) 213, 275, 349
StuI AGGCCT 1 cut(s) 332
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 2 cut(s) 16, 231
TaqI TCGA 1 cut(s) 301
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 1 cut(s) 69
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 3 cut(s) 7, 35, 203
Tsp45I GTSAC 1 cut(s) 14
TspRI CASTG 1 cut(s) 69
XspI CTAG 3 cut(s) 213, 275, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.