Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8058424.1

Orthogroup ID

OG0011850

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 443

Gene Structure 443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8058424.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 430 bp

atggtgctctcaattcgacgccttcctgcttcttctcttggtgtgctcgatgaagagacgttccacaaagaagccgaagctcttggcaaggtgaagcatcggaatttaacagttctgcgaggctactatgccggtcctgatgtgaggctacttgtatacgactacatgcctaatggaaacttagccactctgctccaagaggcttctcaccaagatggtcatgtactaaattggccaatgcggcatctcattgcacttggcattgctagaggcatagctttcctgcactcagtctcaatggttcatggtgatgtgaagccgcaaaatgttctcttcgacgctgattttgaagcccacttatcggaatttggattagaccggttaaccatagtctcaccaaaagcctcctcatcatcatctgccgcaattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

143

Amino Acids

15.7

Weight (kDa)

6.43

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75640
fragaria_vesca	FvH4_2g39080
malus_domestica	MD08G1017600.v1.1 MD08G1017800.v1.1 MD15G1016500.v1.1
prunus_persica	Prupe.1G370300_v2.0.a1
pyrus_communis	pycom08g01540 pycom15g01450 pycom15g01460
rosa_chinensis	RchiOBHm_Chr6g0302191
rosa_laevigata	RLG00000011188
rosa_multiflora	Rmu_co8058424.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166010
rosa_rugosa	Rorug06G0313000
rosa_samantha	Rh6AG425500 Rh6BG477000 Rh6CG438300 Rh6DG425300
rosa_wichuraiana	Rw6G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	3 cut(s)	241, 320, 423
AcoI	YGGCCR	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	103, 365
AcyI	GRCGYC	1 cut(s)	19
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgeI	ACCGGT	1 cut(s)	378
AgsI	TTSAA	1 cut(s)	350
AluBI	AGCT	2 cut(s)	80, 278
AluI	AGCT	2 cut(s)	80, 278
Alw21I	GWGCWC	2 cut(s)	9, 48
Alw26I	GTCTC	3 cut(s)	50, 298, 397
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	2 cut(s)	103, 365
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AsiGI	ACCGGT	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	4 cut(s)	103, 200, 320, 387
AvaII	GGWCC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	235
Bbv12I	GWGCWC	2 cut(s)	9, 48
BccI	CCATC	1 cut(s)	209
BcoDI	GTCTC	3 cut(s)	50, 298, 397
BfaI	CTAG	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	241
BisI	GCNGC	3 cut(s)	242, 320, 423
BlsI	GCNGC	3 cut(s)	243, 321, 424
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmsI	GCATC	2 cut(s)	106, 253
BsaHI	GRCGYC	1 cut(s)	19
BsaWI	WCCGGW	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse118I	RCCGGY	2 cut(s)	131, 378
Bse3DI	GCAATG	2 cut(s)	249, 261
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMI	GCAATG	2 cut(s)	249, 261
BseMII	CTCAG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	397
BsgI	GTGCAG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	235
BshTI	ACCGGT	1 cut(s)	378
BsiHKAI	GWGCWC	2 cut(s)	9, 48
BsiSI	CCGG	2 cut(s)	132, 379
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	3 cut(s)	50, 298, 397
BsmBI	CGTCTC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	9, 48
BspACI	CCGC	3 cut(s)	241, 320, 423
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	302
BsrDI	GCAATG	2 cut(s)	249, 261
BsrFI	RCCGGY	2 cut(s)	131, 378
BssAI	RCCGGY	2 cut(s)	131, 378
BssNAI	GTATAC	1 cut(s)	157
BssNI	GRCGYC	1 cut(s)	19
Bst1107I	GTATAC	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	48, 338
BstACI	GRCGYC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	181, 289
BstMAI	GTCTC	3 cut(s)	50, 298, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	169
BstZ17I	GTATAC	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	235
Cfr10I	RCCGGY	2 cut(s)	131, 378
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	2 cut(s)	27, 347
Csp6I	GTAC	1 cut(s)	224
CspAI	ACCGGT	1 cut(s)	378
CviAII	CATG	3 cut(s)	166, 221, 305
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	181, 289
EaeI	YGGCCR	1 cut(s)	233
Eam1104I	CTCTTC	2 cut(s)	48, 338
EarI	CTCTTC	2 cut(s)	48, 338
Eco47I	GGWCC	1 cut(s)	134
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	3 cut(s)	169, 224, 308
FaiI	YATR	7 cut(s)	129, 157, 167, 222, 275, 306, 389
FatI	CATG	3 cut(s)	165, 220, 304
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	242, 320, 423
Fsp4HI	GCNGC	3 cut(s)	242, 320, 423
FspBI	CTAG	1 cut(s)	267
GluI	GCNGC	3 cut(s)	242, 320, 423
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	2 cut(s)	132, 379
HgaI	GACGC	2 cut(s)	27, 347
Hin1I	GRCGYC	1 cut(s)	19
Hin1II	CATG	3 cut(s)	169, 224, 308
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HpaI	GTTAAC	1 cut(s)	384
HpaII	CCGG	2 cut(s)	132, 379
HphI	GGTGA	4 cut(s)	103, 200, 320, 387
Hpy166II	GTNNAC	2 cut(s)	157, 384
Hpy188I	TCNGA	2 cut(s)	102, 364
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	2 cut(s)	157, 384
Hpy99I	CGWCG	2 cut(s)	21, 341
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	254, 286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	2 cut(s)	181, 289
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	19
Hsp92II	CATG	3 cut(s)	169, 224, 308
KspAI	GTTAAC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	5 cut(s)	39, 145, 150, 296, 392
LweI	GCATC	2 cut(s)	106, 253
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	59
MboII	GAAGA	3 cut(s)	24, 65, 325
MfeI	CAATTG	1 cut(s)	426
MhlI	GDGCHC	2 cut(s)	9, 48
MlsI	TGGCCA	1 cut(s)	235
MluCI	AATT	5 cut(s)	12, 103, 229, 365, 426
MluNI	TGGCCA	1 cut(s)	235
MnlI	CCTC	6 cut(s)	113, 138, 193, 263, 415, 418
Mox20I	TGGCCA	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	235
MseI	TTAA	2 cut(s)	107, 383
MslI	CAYNNNNRTG	2 cut(s)	213, 309
Msp20I	TGGCCA	1 cut(s)	235
MspI	CCGG	2 cut(s)	132, 379
MunI	CAATTG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	241
NlaIII	CATG	3 cut(s)	169, 224, 308
NspI	RCATGY	1 cut(s)	169
PinAI	ACCGGT	1 cut(s)	378
PkrI	GCNGC	3 cut(s)	243, 321, 424
PspPI	GGNCC	1 cut(s)	134
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	2 cut(s)	213, 309
SaqAI	TTAA	2 cut(s)	107, 383
SatI	GCNGC	3 cut(s)	242, 320, 423
Sau96I	GGNCC	1 cut(s)	134
SduI	GDGCHC	2 cut(s)	9, 48
SetI	ASST	4 cut(s)	62, 82, 93, 280
SfaNI	GCATC	2 cut(s)	106, 253
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	2 cut(s)	213, 309
Sse9I	AATT	5 cut(s)	12, 103, 229, 365, 426
SsiI	CCGC	3 cut(s)	241, 320, 423
SspMI	CTAG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	16, 48, 336
TasI	AATT	5 cut(s)	12, 103, 229, 365, 426
TatI	WGTACW	1 cut(s)	223
TauI	GCSGC	3 cut(s)	244, 322, 425
Tru1I	TTAA	2 cut(s)	107, 383
Tru9I	TTAA	2 cut(s)	107, 383
TspDTI	ATGAA	2 cut(s)	66, 293
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	2 cut(s)	103, 365
XceI	RCATGY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.