Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8105986.1

Orthogroup ID

OG0010480

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 606

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8105986.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

attctctccaccttcggaggcgcctcccagtgcttcgttctcggcgacgccacttacggcgcgtgctgcgtcgacgacctcgccgccaaggccctcaacgccgacctcctcattcacttcggccacagctgcctcgtccccctccacgtcacctccatcccctgcctctacgtcttcgtcgaaatctccatcgacgtcggccggttaatccagaccgtccatctcaacctccaaaaccctctccctaaaaccctagtcctcgccggaacaatccagttcgcttcggcgattcgagcggccaagcccgagcttgaagcccggggtttcaaggtcttggtcccacagtctaagcccttgtccgccggcgaggttttggggtgtacagccccgaaaatctcacgaaaccacggcggtgaggacggcggtgacactgtactggtattcgtggccgacggccggtttcatctggaagcttttatgatagcaaatccaggggttaaggcgtttcggtacgatccttatatggggaagctgtttctggaggaatatgatcacaaagggatgagggagtcgagaaagagtgccgtgttgagagccaaagaggcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Diphthamide_syn

Protein Analysis

202

Amino Acids

21.76

Weight (kDa)

7.18

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62030
fragaria_vesca	FvH4_5g30480 FvH4_5g30480
malus_domestica	MD04G1037900.v1.1
prunus_persica	Prupe.1G561000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0225101 RchiOBHm_Chr7g0225141
rosa_laevigata	RLG00000001844
rosa_multiflora	Rmu_co8105986.1_g000001 Rmu_sc0000307.1_g000014 Rmu_sc0000322.1_g000032 Rmu_sc0000322.1_g000039
rosa_roxburghii	Rroxscaffold_3G00234210
rosa_rugosa	Rorug07G0227600 Rorug07G0227700
rosa_samantha	Rh7AG376200 Rh7BG362500 Rh7CG394900 Rh7DG372600 Rh7DG373000
rosa_wichuraiana	Rw7G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	20
AccBSI	CCGCTC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	62
AciI	CCGC	5 cut(s)	84, 296, 360, 411, 423
AclWI	GGATC	1 cut(s)	509
AcoI	YGGCCR	5 cut(s)	121, 199, 297, 447, 454
AcyI	GRCGYC	3 cut(s)	21, 48, 195
AfaI	GTAC	3 cut(s)	382, 435, 512
AfiI	CCNNNNNNNGG	2 cut(s)	456, 524
AgsI	TTSAA	2 cut(s)	314, 328
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	490
AleI	CACNNNNGTG	1 cut(s)	411
AluBI	AGCT	4 cut(s)	129, 310, 473, 532
AluI	AGCT	4 cut(s)	129, 310, 473, 532
AlwI	GGATC	1 cut(s)	509
Ama87I	CYCGRG	2 cut(s)	305, 318
AoxI	GGCC	6 cut(s)	90, 121, 199, 297, 447, 454
ApeKI	GCWGC	2 cut(s)	66, 129
AspLEI	GCGC	2 cut(s)	23, 62
AspS9I	GGNCC	2 cut(s)	91, 337
AsuC2I	CCSGG	2 cut(s)	319, 320
AsuHPI	GGTGA	3 cut(s)	142, 425, 437
AvaI	CYCGRG	2 cut(s)	305, 318
AvaII	GGWCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	53, 116
BccI	CCATC	3 cut(s)	164, 197, 228
BceAI	ACGGC	5 cut(s)	73, 424, 436, 469, 569
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	1 cut(s)	550
BcnI	CCSGG	2 cut(s)	319, 320
BfaI	CTAG	1 cut(s)	254
BfoI	RGCGCY	1 cut(s)	24
BglI	GCCNNNNNGGC	2 cut(s)	89, 602
BisI	GCNGC	4 cut(s)	67, 84, 130, 297
BlsI	GCNGC	4 cut(s)	68, 85, 131, 298
Bme1390I	CCNGG	3 cut(s)	319, 320, 492
Bme18I	GGWCC	1 cut(s)	337
BmeT110I	CYCGRG	2 cut(s)	305, 318
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	91, 337
BmiI	GGNNCC	2 cut(s)	22, 339
BmrFI	CCNGG	3 cut(s)	319, 320, 492
BmrI	ACTGGG	1 cut(s)	22
BmuI	ACTGGG	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	560
BpuMI	CCSGG	2 cut(s)	319, 320
BsaHI	GRCGYC	3 cut(s)	21, 48, 195
BsaJI	CCNNGG	5 cut(s)	87, 318, 319, 406, 491
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	456, 524
Bse118I	RCCGGY	3 cut(s)	201, 362, 456
Bse1I	ACTGG	3 cut(s)	28, 274, 441
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	5 cut(s)	87, 318, 319, 406, 491
BseGI	GGATG	2 cut(s)	156, 567
BseLI	CCNNNNNNNGG	2 cut(s)	456, 524
BseNI	ACTGG	3 cut(s)	28, 274, 441
BseRI	GAGGAG	1 cut(s)	98
BseX3I	CGGCCG	2 cut(s)	199, 454
BseXI	GCAGC	2 cut(s)	53, 116
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	2 cut(s)	202, 457
BshFI	GGCC	7 cut(s)	92, 123, 201, 299, 449, 456, 605
BshNI	GGYRCC	1 cut(s)	20
BsiEI	CGRYCG	2 cut(s)	202, 457
BsiHKCI	CYCGRG	2 cut(s)	305, 318
BsiSI	CCGG	5 cut(s)	202, 264, 319, 363, 457
BslFI	GGGAC	2 cut(s)	122, 323
BslI	CCNNNNNNNGG	2 cut(s)	456, 524
BsmFI	GGGAC	2 cut(s)	122, 323
BsnI	GGCC	7 cut(s)	92, 123, 201, 299, 449, 456, 605
BsoBI	CYCGRG	2 cut(s)	305, 318
Bsp1407I	TGTACA	1 cut(s)	380
Bsp143I	GATC	2 cut(s)	514, 550
BspACI	CCGC	5 cut(s)	84, 296, 360, 411, 423
BspANI	GGCC	7 cut(s)	92, 123, 201, 299, 449, 456, 605
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	22, 339
BspPI	GGATC	1 cut(s)	509
BspT107I	GGYRCC	1 cut(s)	20
BsrBI	CCGCTC	1 cut(s)	296
BsrFI	RCCGGY	3 cut(s)	201, 362, 456
BsrGI	TGTACA	1 cut(s)	380
BsrI	ACTGG	3 cut(s)	28, 274, 441
BssAI	RCCGGY	3 cut(s)	201, 362, 456
BssECI	CCNNGG	5 cut(s)	87, 318, 319, 406, 491
BssMI	GATC	2 cut(s)	514, 550
BssNI	GRCGYC	3 cut(s)	21, 48, 195
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	217, 345, 433
BstACI	GRCGYC	3 cut(s)	21, 48, 195
BstAUI	TGTACA	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	64, 364
BstDEI	CTNAG	1 cut(s)	348
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	156, 567
BstFNI	CGCG	1 cut(s)	62
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	23, 62
BstKTI	GATC	2 cut(s)	517, 553
BstMBI	GATC	2 cut(s)	514, 550
BstMCI	CGRYCG	2 cut(s)	202, 457
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 89, 98, 129, 293, 602
BstNI	CCWGG	1 cut(s)	492
BstSCI	CCNGG	3 cut(s)	317, 318, 490
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	53, 116
BstV2I	GAAGAC	1 cut(s)	166
BstZI	CGGCCG	2 cut(s)	199, 454
BsuRI	GGCC	7 cut(s)	92, 123, 201, 299, 449, 456, 605
BtgI	CCRYGG	1 cut(s)	406
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	156, 567
BtsIMutI	CAGTG	2 cut(s)	35, 429
Cac8I	GCNNGC	2 cut(s)	64, 364
CfoI	GCGC	2 cut(s)	23, 62
Cfr10I	RCCGGY	3 cut(s)	201, 362, 456
Cfr13I	GGNCC	2 cut(s)	91, 337
Cfr9I	CCCGGG	1 cut(s)	318
CseI	GACGC	2 cut(s)	56, 58
Csp6I	GTAC	3 cut(s)	381, 434, 511
CviQI	GTAC	3 cut(s)	381, 434, 511
DdeI	CTNAG	1 cut(s)	348
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	2 cut(s)	516, 552
DpnII	GATC	2 cut(s)	514, 550
EaeI	YGGCCR	5 cut(s)	121, 199, 297, 447, 454
EagI	CGGCCG	2 cut(s)	199, 454
EciI	GGCGGA	1 cut(s)	349
EclXI	CGGCCG	2 cut(s)	199, 454
Eco130I	CCWWGG	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	337
Eco52I	CGGCCG	2 cut(s)	199, 454
Eco88I	CYCGRG	2 cut(s)	305, 318
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	87
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	87
FaiI	YATR	4 cut(s)	479, 522, 524, 549
FaqI	GGGAC	2 cut(s)	122, 323
FbaI	TGATCA	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	4 cut(s)	67, 84, 130, 297
FokI	GGATG	2 cut(s)	143, 574
Fsp4HI	GCNGC	4 cut(s)	67, 84, 130, 297
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	2 cut(s)	22, 61
GluI	GCNGC	4 cut(s)	67, 84, 130, 297
GsuI	CTGGAG	1 cut(s)	560
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	7 cut(s)	92, 123, 201, 299, 449, 456, 605
HapII	CCGG	5 cut(s)	202, 264, 319, 363, 457
HgaI	GACGC	2 cut(s)	56, 58
HhaI	GCGC	2 cut(s)	23, 62
Hin1I	GRCGYC	3 cut(s)	21, 48, 195
Hin6I	GCGC	2 cut(s)	21, 60
HinP1I	GCGC	2 cut(s)	21, 60
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	2 cut(s)	289, 569
HpaII	CCGG	5 cut(s)	202, 264, 319, 363, 457
HphI	GGTGA	3 cut(s)	142, 425, 437
Hpy166II	GTNNAC	2 cut(s)	73, 381
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	5 cut(s)	211, 399, 467, 539, 573
Hpy8I	GTNNAC	2 cut(s)	73, 381
Hpy99I	CGWCG	7 cut(s)	50, 74, 77, 182, 197, 200, 455
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	3 cut(s)	217, 345, 433
HpyCH4IV	ACGT	3 cut(s)	147, 171, 195
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 89, 98, 129, 293, 602
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	3 cut(s)	147, 171, 195
Hsp92I	GRCGYC	3 cut(s)	21, 48, 195
HspAI	GCGC	2 cut(s)	21, 60
KasI	GGCGCC	1 cut(s)	20
KroI	GCCGGC	1 cut(s)	362
KroNI	GCCGGC	1 cut(s)	364
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	514, 550
Lsp1109I	GCAGC	2 cut(s)	53, 116
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	3 cut(s)	147, 171, 195
MaeIII	GTNAC	2 cut(s)	148, 425
MalI	GATC	2 cut(s)	516, 552
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	2 cut(s)	514, 550
MboII	GAAGA	1 cut(s)	166
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	578
MreI	CGCCGGCG	1 cut(s)	362
MroNI	GCCGGC	1 cut(s)	362
MseI	TTAA	2 cut(s)	206, 498
MslI	CAYNNNNRTG	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	5 cut(s)	202, 264, 319, 363, 457
MspR9I	CCNGG	3 cut(s)	319, 320, 492
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	6 cut(s)	66, 89, 98, 129, 293, 602
NaeI	GCCGGC	1 cut(s)	364
NarI	GGCGCC	1 cut(s)	21
NciI	CCSGG	2 cut(s)	319, 320
NdeII	GATC	2 cut(s)	514, 550
NgoMIV	GCCGGC	1 cut(s)	362
NlaIV	GGNNCC	2 cut(s)	22, 339
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	148, 425
OliI	CACNNNNGTG	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 177
PdiI	GCCGGC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	4 cut(s)	68, 85, 131, 298
PleI	GAGTC	1 cut(s)	577
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	577
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	2 cut(s)	22, 339
PspPI	GGNCC	2 cut(s)	91, 337
PvuII	CAGCTG	1 cut(s)	129
RsaI	GTAC	3 cut(s)	382, 435, 512
RsaNI	GTAC	3 cut(s)	381, 434, 511
RseI	CAYNNNNRTG	1 cut(s)	411
SalI	GTCGAC	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	206, 498
SatI	GCNGC	4 cut(s)	67, 84, 130, 297
Sau3AI	GATC	2 cut(s)	514, 550
Sau96I	GGNCC	2 cut(s)	91, 337
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	3 cut(s)	319, 320, 492
SfoI	GGCGCC	1 cut(s)	22
SgrAI	CRCCGGYG	1 cut(s)	362
SgrDI	CGTCGACG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	337
SmaI	CCCGGG	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	411
SsiI	CCGC	5 cut(s)	84, 296, 360, 411, 423
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	3 cut(s)	317, 318, 490
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	217, 345, 433
TaiI	ACGT	3 cut(s)	150, 174, 198
TaqI	TCGA	5 cut(s)	72, 180, 192, 292, 572
TatI	WGTACW	2 cut(s)	380, 433
TauI	GCSGC	2 cut(s)	86, 299
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	2 cut(s)	206, 498
Tru9I	TTAA	2 cut(s)	206, 498
TscAI	CASTG	2 cut(s)	35, 436
TseFI	GTSAC	2 cut(s)	148, 425
TseI	GCWGC	2 cut(s)	66, 129
Tsp45I	GTSAC	2 cut(s)	148, 425
TspDTI	ATGAA	1 cut(s)	452
TspMI	CCCGGG	1 cut(s)	318
TspRI	CASTG	2 cut(s)	35, 436
VpaK11BI	GGWCC	1 cut(s)	337
XmaI	CCCGGG	1 cut(s)	318
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	1 cut(s)	254
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.