Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000322.1

Orthogroup ID

OG0010480

Physical Location & Seq

Genomic Coordinates Forward (+)

127613 .. 129819

Gene Structure 2207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000322.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atggtggataccacgaagaaaatctatgctggtcccactgggagtgccaaaatgtttggctccaaaactggttcagctagcaaacagcctcttttgagtgcgcaggcgtgccagcaccgtgggattgagcagagcaatcaccgggaagtaggagaaagtagaatgagcatagcaatcaccgggaagtacgagaaagcacggggtttgctaaagcgtgactttagcttcactgggttgcaagggccttcaaataacagaggaaatacgcttggaagtttggaccccgccgctgctctgaagtttaaacaagaaacccagttttccgacgaccagctcaccgccgatggaggaggcgcaaaagccaagtctcgctcttctcggcgactcagaacagcgaaagccacaagcgccgaagcggttcgtccggagccaaatcccggactcaatactccacgacccggctctcaacgccgccataagcctcctcccctccaactaccacttcgaagtccacaaatgcgtctggcgcgtccgctccacgaacgcctcgcgcgtcgctctccagctgccggagggcctcctgatgtactccctcgtcctctccgatattctctccaccttcggaggcgcctcccagtgcttcgttctcggcgacgccacttacggcgcaccgtccatctcaacctccaaaaccctctccctaaaaccctagtcctcgctggaacaatccagttcgcttcggcgattcgagctgccaagcccgagcttgaagcccggggtttcaaggtcttggtcccacagtctaagcccttgtccgccagcgaggttttgggctgtacagccccgaaaatctcacgaaaccacggtgaaagtactagaatggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Diphthamide_syn

Protein Analysis

295

Amino Acids

32.23

Weight (kDa)

11.63

Isoelectric Point (pI)

68.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62030
fragaria_vesca	FvH4_5g30480 FvH4_5g30480
malus_domestica	MD04G1037900.v1.1
prunus_persica	Prupe.1G561000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0225101 RchiOBHm_Chr7g0225141
rosa_laevigata	RLG00000001844
rosa_multiflora	Rmu_co8105986.1_g000001 Rmu_sc0000307.1_g000014 Rmu_sc0000322.1_g000032 Rmu_sc0000322.1_g000039
rosa_roxburghii	Rroxscaffold_3G00234210
rosa_rugosa	Rorug07G0227600 Rorug07G0227700
rosa_samantha	Rh7AG376200 Rh7BG362500 Rh7CG394900 Rh7DG372600 Rh7DG373000
rosa_wichuraiana	Rw7G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	627
AccBSI	CCGCTC	1 cut(s)	535
AccII	CGCG	3 cut(s)	529, 551, 553
AccIII	TCCGGA	1 cut(s)	424
AciI	CCGC	7 cut(s)	285, 288, 339, 416, 472, 533, 816
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	2 cut(s)	628, 655
AfaI	GTAC	4 cut(s)	188, 588, 838, 874
AfiI	CCNNNNNNNGG	3 cut(s)	437, 458, 569
AgsI	TTSAA	3 cut(s)	249, 770, 784
AjuI	GAANNNNNNNTTGG	2 cut(s)	486, 518
AluBI	AGCT	6 cut(s)	77, 225, 334, 566, 752, 766
AluI	AGCT	6 cut(s)	77, 225, 334, 566, 752, 766
Alw26I	GTCTC	1 cut(s)	372
Ama87I	CYCGRG	2 cut(s)	761, 774
Aor13HI	TCCGGA	1 cut(s)	424
AoxI	GGCC	3 cut(s)	242, 575, 882
ApeKI	GCWGC	3 cut(s)	290, 566, 752
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
Asp700I	GAANNNNTTC	1 cut(s)	417
AspLEI	GCGC	7 cut(s)	103, 356, 410, 529, 553, 630, 669
AspS9I	GGNCC	5 cut(s)	32, 242, 280, 575, 793
AsuC2I	CCSGG	6 cut(s)	143, 181, 438, 459, 775, 776
AsuHPI	GGTGA	4 cut(s)	131, 169, 328, 878
AsuII	TTCGAA	1 cut(s)	505
AsuNHI	GCTAGC	1 cut(s)	77
AvaI	CYCGRG	2 cut(s)	761, 774
AvaII	GGWCC	3 cut(s)	32, 280, 793
BanI	GGYRCC	1 cut(s)	627
BbvI	GCAGC	3 cut(s)	277, 553, 739
BccI	CCATC	2 cut(s)	338, 684
BceAI	ACGGC	1 cut(s)	680
BcnI	CCSGG	6 cut(s)	143, 181, 438, 459, 775, 776
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	4 cut(s)	78, 710, 876, 886
BfoI	RGCGCY	2 cut(s)	411, 631
BisI	GCNGC	5 cut(s)	288, 291, 472, 567, 753
BlsI	GCNGC	5 cut(s)	289, 292, 473, 568, 754
BmcAI	AGTACT	1 cut(s)	874
Bme1390I	CCNGG	6 cut(s)	143, 181, 438, 459, 775, 776
Bme18I	GGWCC	3 cut(s)	32, 280, 793
BmeT110I	CYCGRG	2 cut(s)	761, 774
BmgT120I	GGNCC	5 cut(s)	32, 242, 280, 575, 793
BmiI	GGNNCC	6 cut(s)	34, 61, 282, 429, 629, 795
BmrFI	CCNGG	6 cut(s)	143, 181, 438, 459, 775, 776
BmrI	ACTGGG	4 cut(s)	48, 240, 310, 629
BmtI	GCTAGC	1 cut(s)	81
BmuI	ACTGGG	4 cut(s)	48, 240, 310, 629
BpmI	CTGGAG	1 cut(s)	546
Bpu14I	TTCGAA	1 cut(s)	505
BpuMI	CCSGG	6 cut(s)	143, 181, 438, 459, 775, 776
BsaHI	GRCGYC	2 cut(s)	628, 655
BsaJI	CCNNGG	4 cut(s)	118, 774, 775, 862
BsaWI	WCCGGW	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	3 cut(s)	437, 458, 569
Bse1I	ACTGG	6 cut(s)	43, 73, 235, 316, 635, 730
BseAI	TCCGGA	1 cut(s)	424
BseDI	CCNNGG	4 cut(s)	118, 774, 775, 862
BseLI	CCNNNNNNNGG	3 cut(s)	437, 458, 569
BseMII	CTCAG	1 cut(s)	400
BseNI	ACTGG	6 cut(s)	43, 73, 235, 316, 635, 730
BseRI	GAGGAG	2 cut(s)	363, 474
BseXI	GCAGC	3 cut(s)	277, 553, 739
Bsh1236I	CGCG	3 cut(s)	529, 551, 553
BshFI	GGCC	3 cut(s)	244, 577, 884
BshNI	GGYRCC	1 cut(s)	627
BsiHKCI	CYCGRG	2 cut(s)	761, 774
BsiSI	CCGG	7 cut(s)	142, 180, 425, 438, 459, 570, 775
BslFI	GGGAC	2 cut(s)	18, 779
BslI	CCNNNNNNNGG	3 cut(s)	437, 458, 569
BsmAI	GTCTC	1 cut(s)	372
BsmFI	GGGAC	2 cut(s)	18, 779
BsnI	GGCC	3 cut(s)	244, 577, 884
BsoBI	CYCGRG	2 cut(s)	761, 774
Bsp119I	TTCGAA	1 cut(s)	505
Bsp13I	TCCGGA	1 cut(s)	424
Bsp1407I	TGTACA	1 cut(s)	836
BspACI	CCGC	7 cut(s)	285, 288, 339, 416, 472, 533, 816
BspANI	GGCC	3 cut(s)	244, 577, 884
BspCNI	CTCAG	1 cut(s)	399
BspEI	TCCGGA	1 cut(s)	424
BspFNI	CGCG	3 cut(s)	529, 551, 553
BspLI	GGNNCC	6 cut(s)	34, 61, 282, 429, 629, 795
BspOI	GCTAGC	1 cut(s)	81
BspQI	GCTCTTC	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	505
BspT107I	GGYRCC	1 cut(s)	627
BsrBI	CCGCTC	1 cut(s)	535
BsrGI	TGTACA	1 cut(s)	836
BsrI	ACTGG	6 cut(s)	43, 73, 235, 316, 635, 730
BssECI	CCNNGG	4 cut(s)	118, 774, 775, 862
BssNI	GRCGYC	2 cut(s)	628, 655
Bst4CI	ACNGT	4 cut(s)	119, 673, 801, 866
Bst6I	CTCTTC	1 cut(s)	379
BstACI	GRCGYC	2 cut(s)	628, 655
BstAUI	TGTACA	1 cut(s)	836
BstBI	TTCGAA	1 cut(s)	505
BstC8I	GCNNGC	5 cut(s)	79, 105, 109, 113, 820
BstDEI	CTNAG	2 cut(s)	386, 804
BstDSI	CCRYGG	2 cut(s)	118, 862
BstFNI	CGCG	3 cut(s)	529, 551, 553
BstH2I	RGCGCY	2 cut(s)	411, 631
BstHHI	GCGC	7 cut(s)	103, 356, 410, 529, 553, 630, 669
BstMAI	GTCTC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 468, 526, 749
BstSCI	CCNGG	6 cut(s)	141, 179, 436, 457, 773, 774
BstUI	CGCG	3 cut(s)	529, 551, 553
BstV1I	GCAGC	3 cut(s)	277, 553, 739
BstXI	CCANNNNNNTGG	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	244, 577, 884
BtgI	CCRYGG	2 cut(s)	118, 862
BtsIMutI	CAGTG	3 cut(s)	36, 228, 642
Cac8I	GCNNGC	5 cut(s)	79, 105, 109, 113, 820
CfoI	GCGC	7 cut(s)	103, 356, 410, 529, 553, 630, 669
Cfr13I	GGNCC	5 cut(s)	32, 242, 280, 575, 793
Cfr9I	CCCGGG	1 cut(s)	774
CseI	GACGC	4 cut(s)	509, 518, 542, 663
Csp6I	GTAC	4 cut(s)	187, 587, 837, 873
CviQI	GTAC	4 cut(s)	187, 587, 837, 873
DdeI	CTNAG	2 cut(s)	386, 804
DinI	GGCGCC	1 cut(s)	629
DraI	TTTAAA	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
EciI	GGCGGA	1 cut(s)	805
Eco47I	GGWCC	3 cut(s)	32, 280, 793
Eco57I	CTGAAG	1 cut(s)	317
Eco88I	CYCGRG	2 cut(s)	761, 774
EcoO109I	RGGNCCY	2 cut(s)	242, 575
EgeI	GGCGCC	1 cut(s)	629
EheI	GGCGCC	1 cut(s)	629
FaiI	YATR	3 cut(s)	27, 170, 477
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	2 cut(s)	18, 779
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	5 cut(s)	288, 291, 472, 567, 753
Fsp4HI	GCNGC	5 cut(s)	288, 291, 472, 567, 753
FspBI	CTAG	4 cut(s)	78, 710, 876, 886
FspI	TGCGCA	1 cut(s)	102
GlaI	GCGC	7 cut(s)	102, 355, 409, 528, 552, 629, 668
GluI	GCNGC	5 cut(s)	288, 291, 472, 567, 753
GsuI	CTGGAG	1 cut(s)	546
HaeII	RGCGCY	2 cut(s)	411, 631
HaeIII	GGCC	3 cut(s)	244, 577, 884
HapII	CCGG	7 cut(s)	142, 180, 425, 438, 459, 570, 775
HgaI	GACGC	4 cut(s)	509, 518, 542, 663
HhaI	GCGC	7 cut(s)	103, 356, 410, 529, 553, 630, 669
Hin1I	GRCGYC	2 cut(s)	628, 655
Hin6I	GCGC	7 cut(s)	101, 354, 408, 527, 551, 628, 667
HinP1I	GCGC	7 cut(s)	101, 354, 408, 527, 551, 628, 667
HinfI	GANTC	3 cut(s)	384, 441, 745
HpaII	CCGG	7 cut(s)	142, 180, 425, 438, 459, 570, 775
HphI	GGTGA	4 cut(s)	131, 169, 328, 878
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188I	TCNGA	5 cut(s)	297, 325, 389, 605, 624
Hpy188III	TCNNGA	3 cut(s)	425, 581, 855
Hpy8I	GTNNAC	1 cut(s)	512
Hpy99I	CGWCG	3 cut(s)	329, 558, 657
HpyAV	CCTTC	2 cut(s)	255, 629
HpyCH4III	ACNGT	4 cut(s)	119, 673, 801, 866
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 468, 526, 749
HpyF3I	CTNAG	2 cut(s)	386, 804
Hsp92I	GRCGYC	2 cut(s)	628, 655
HspAI	GCGC	7 cut(s)	101, 354, 408, 527, 551, 628, 667
KasI	GGCGCC	1 cut(s)	627
Kpn2I	TCCGGA	1 cut(s)	424
LguI	GCTCTTC	1 cut(s)	379
LmnI	GCTCC	3 cut(s)	65, 427, 540
Lsp1109I	GCAGC	3 cut(s)	277, 553, 739
MaeI	CTAG	4 cut(s)	78, 710, 876, 886
MaeIII	GTNAC	1 cut(s)	215
MbiI	CCGCTC	1 cut(s)	535
MboII	GAAGA	2 cut(s)	28, 366
Mly113I	GGCGCC	1 cut(s)	628
MlyI	GAGTC	2 cut(s)	378, 435
MmeI	TCCRAC	2 cut(s)	348, 517
MroI	TCCGGA	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	1 cut(s)	303
MspA1I	CMGCKG	2 cut(s)	290, 566
MspI	CCGG	7 cut(s)	142, 180, 425, 438, 459, 570, 775
MspR9I	CCNGG	6 cut(s)	143, 181, 438, 459, 775, 776
MssI	GTTTAAAC	1 cut(s)	304
MvnI	CGCG	3 cut(s)	529, 551, 553
MwoI	GCNNNNNNNGC	4 cut(s)	407, 468, 526, 749
NarI	GGCGCC	1 cut(s)	628
NciI	CCSGG	6 cut(s)	143, 181, 438, 459, 775, 776
NheI	GCTAGC	1 cut(s)	77
NlaIV	GGNNCC	6 cut(s)	34, 61, 282, 429, 629, 795
NmeAIII	GCCGAG	2 cut(s)	358, 628
NmuCI	GTSAC	1 cut(s)	215
NsbI	TGCGCA	1 cut(s)	102
NspV	TTCGAA	1 cut(s)	505
PciSI	GCTCTTC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	3 cut(s)	550, 601, 649
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	745
PfoI	TCCNGGA	1 cut(s)	436
PkrI	GCNGC	5 cut(s)	289, 292, 473, 568, 754
PleI	GAGTC	2 cut(s)	378, 435
PluTI	GGCGCC	1 cut(s)	631
PmeI	GTTTAAAC	1 cut(s)	304
PpsI	GAGTC	2 cut(s)	378, 435
PspN4I	GGNNCC	6 cut(s)	34, 61, 282, 429, 629, 795
PspPI	GGNCC	5 cut(s)	32, 242, 280, 575, 793
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	4 cut(s)	188, 588, 838, 874
RsaNI	GTAC	4 cut(s)	187, 587, 837, 873
SapI	GCTCTTC	1 cut(s)	379
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	5 cut(s)	288, 291, 472, 567, 753
Sau96I	GGNCC	5 cut(s)	32, 242, 280, 575, 793
ScaI	AGTACT	1 cut(s)	874
SchI	GAGTC	2 cut(s)	378, 435
ScrFI	CCNGG	6 cut(s)	143, 181, 438, 459, 775, 776
SfoI	GGCGCC	1 cut(s)	629
SfuI	TTCGAA	1 cut(s)	505
SinI	GGWCC	3 cut(s)	32, 280, 793
SmaI	CCCGGG	1 cut(s)	776
SsiI	CCGC	7 cut(s)	285, 288, 339, 416, 472, 533, 816
SspDI	GGCGCC	1 cut(s)	627
SspMI	CTAG	4 cut(s)	78, 710, 876, 886
StyD4I	CCNGG	6 cut(s)	141, 179, 436, 457, 773, 774
TaaI	ACNGT	4 cut(s)	119, 673, 801, 866
TaqI	TCGA	2 cut(s)	505, 748
TatI	WGTACW	3 cut(s)	586, 836, 872
TauI	GCSGC	2 cut(s)	290, 474
TfiI	GAWTC	1 cut(s)	745
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	3 cut(s)	43, 235, 642
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	3 cut(s)	290, 566, 752
Tsp45I	GTSAC	1 cut(s)	215
TspMI	CCCGGG	1 cut(s)	774
TspRI	CASTG	3 cut(s)	43, 235, 642
VpaK11BI	GGWCC	3 cut(s)	32, 280, 793
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XmaI	CCCGGG	1 cut(s)	774
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	4 cut(s)	78, 710, 876, 886
ZrmI	AGTACT	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.