Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000307.1

Orthogroup ID

OG0010480

Physical Location & Seq

Genomic Coordinates Reverse (-)

77395 .. 77683

Gene Structure 289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000307.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 289 bp

tgcttgtcctcgcttgtcaattgattggggggatgcatttacgaagccccttttgaatcctttcgagactgacattgctctcggcttcattcctggttggtgggagagggataagaaaagtgattcggggtgctgtgcttgtggtaatggcaatgggactgcccttgtaggggactatcccatggattactatgctgcagatggaggggagtggaactcctcttatgtcaacaagccgacacgccctgttcgcagggattccgcattggcaactgccaacattgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Diphthamide_syn

Protein Analysis

95

Amino Acids

10.35

Weight (kDa)

4.64

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62030
fragaria_vesca	FvH4_5g30480 FvH4_5g30480
malus_domestica	MD04G1037900.v1.1
prunus_persica	Prupe.1G561000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0225101 RchiOBHm_Chr7g0225141
rosa_laevigata	RLG00000001844
rosa_multiflora	Rmu_co8105986.1_g000001 Rmu_sc0000307.1_g000014 Rmu_sc0000322.1_g000032 Rmu_sc0000322.1_g000039
rosa_roxburghii	Rroxscaffold_3G00234210
rosa_rugosa	Rorug07G0227600 Rorug07G0227700
rosa_samantha	Rh7AG376200 Rh7BG362500 Rh7CG394900 Rh7DG372600 Rh7DG373000
rosa_wichuraiana	Rw7G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	262
AfiI	CCNNNNNNNGG	2 cut(s)	169, 170
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	195
Asp700I	GAANNNNTTC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	195
BciT130I	CCWGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	201, 233
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 170
Bse3DI	GCAATG	2 cut(s)	73, 158
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	169, 170
BseMI	GCAATG	2 cut(s)	73, 158
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	182
BslFI	GGGAC	2 cut(s)	170, 186
BslI	CCNNNNNNNGG	2 cut(s)	169, 170
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	2 cut(s)	170, 186
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	200
BsrDI	GCAATG	2 cut(s)	73, 158
BssECI	CCNNGG	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	94
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	38
BstMAI	GTCTC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	182
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	38
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	3 cut(s)	47, 85, 236
CviKI_1	RGCY	3 cut(s)	47, 85, 236
Eco130I	CCWWGG	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	1 cut(s)	185
FaiI	YATR	3 cut(s)	183, 193, 226
FaqI	GGGAC	2 cut(s)	170, 186
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	196
GluI	GCNGC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	230
HindII	GTYRAC	1 cut(s)	230
HinfI	GANTC	3 cut(s)	56, 123, 258
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	230
HpyCH4V	TGCA	2 cut(s)	36, 198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
Hsp92II	CATG	1 cut(s)	185
LpnPI	CCDG	4 cut(s)	79, 106, 239, 259
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	23
MfeI	CAATTG	1 cut(s)	19
MluCI	AATT	1 cut(s)	19
MnlI	CCTC	4 cut(s)	19, 100, 198, 230
Mph1103I	ATGCAT	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	94
MunI	CAATTG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	250
NcoI	CCATGG	1 cut(s)	181
NlaIII	CATG	1 cut(s)	185
NmeAIII	GCCGAG	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	56, 123, 258
PkrI	GCNGC	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	200
SatI	GCNGC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	94
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	196
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	181
TaqI	TCGA	1 cut(s)	64
TasI	AATT	1 cut(s)	19
TfiI	GAWTC	3 cut(s)	56, 123, 258
TseI	GCWGC	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.