Rmu_co8118764.1_g000001

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8118764.1
OG0007281
Physical Location & Seq
Forward (+)
28 .. 522
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8118764.1_g000001.1.cds

Sequence Viewer

Length: 495 bp
atgaatgccactgaagatccagaagattgtgctccaacagaacttctggaagaaatctatgactcaattattaaagaagagataaagatgaaagatgagagtactagtctcgagaaaagtggcaaatataagccagaaggtgaagagagaggacgacttgtcagtattcttaatctggctcttcccagaaggacactgtcttctgataccaagtctgaaagtgaagctatcataaagagagcacaagatatatttaggaatcaaggagcacaaagaggggtcttccatactacacagcagatagaacttgtaaggcctatggtagaagctgttggatggcctttgcttgctaccttctctgttacaatggaggagggtgagaataagtcgagggttgttctctgcatggaaggatttaaagcaggaatacacattacacatgttctggggatggataccatgcgctatgccttcttaacatctctggtcaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

164

Amino Acids

18.51

Weight (kDa)

5.21

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 1 cut(s) 103
AflIII ACRYGT 1 cut(s) 439
AhdI GACNNNNNGTC 1 cut(s) 158
AhlI ACTAGT 1 cut(s) 104
AluBI AGCT 2 cut(s) 227, 329
AluI AGCT 2 cut(s) 227, 329
Alw21I GWGCWC 3 cut(s) 34, 244, 271
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 2 cut(s) 314, 338
AspLEI GCGC 1 cut(s) 465
AsuHPI GGTGA 2 cut(s) 152, 389
AvaI CYCGRG 1 cut(s) 110
BbsI GAAGAC 2 cut(s) 192, 274
Bbv12I GWGCWC 3 cut(s) 34, 244, 271
BccI CCATC 2 cut(s) 330, 445
BciVI GTATCC 1 cut(s) 448
BcoDI GTCTC 1 cut(s) 113
BcuI ACTAGT 1 cut(s) 104
BfaI CTAG 1 cut(s) 105
BfuI GTATCC 1 cut(s) 448
BmcAI AGTACT 1 cut(s) 103
BmeRI GACNNNNNGTC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 110
BpiI GAAGAC 2 cut(s) 192, 274
BseGI GGATG 2 cut(s) 341, 456
BseRI GAGGAG 1 cut(s) 386
BshFI GGCC 2 cut(s) 316, 340
BsiHKAI GWGCWC 3 cut(s) 34, 244, 271
BsiHKCI CYCGRG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 316, 340
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 3 cut(s) 34, 244, 271
Bsp143I GATC 1 cut(s) 16
BspANI GGCC 2 cut(s) 316, 340
BspPI GGATC 1 cut(s) 11
BspQI GCTCTTC 1 cut(s) 186
BssMI GATC 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 198
Bst6I CTCTTC 3 cut(s) 72, 138, 186
BstC8I GCNNGC 1 cut(s) 348
BstF5I GGATG 2 cut(s) 341, 456
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 1 cut(s) 16
BstNSI RCATGY 1 cut(s) 443
BstV2I GAAGAC 2 cut(s) 192, 274
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuI GTATCC 1 cut(s) 448
BsuRI GGCC 2 cut(s) 316, 340
BtsCI GGATG 2 cut(s) 341, 456
BtsIMutI CAGTG 2 cut(s) 9, 194
Cac8I GCNNGC 1 cut(s) 348
CfoI GCGC 1 cut(s) 465
Csp6I GTAC 1 cut(s) 102
CviAII CATG 3 cut(s) 406, 440, 460
CviJI RGCY 6 cut(s) 133, 179, 227, 316, 329, 340
CviKI_1 RGCY 6 cut(s) 133, 179, 227, 316, 329, 340
CviQI GTAC 1 cut(s) 102
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
DraI TTTAAA 1 cut(s) 418
DriI GACNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 3 cut(s) 72, 138, 186
Eam1105I GACNNNNNGTC 1 cut(s) 158
EarI CTCTTC 3 cut(s) 72, 138, 186
Eco147I AGGCCT 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 110
FaeI CATG 3 cut(s) 409, 443, 463
FatI CATG 3 cut(s) 405, 439, 459
FokI GGATG 2 cut(s) 348, 463
FspBI CTAG 1 cut(s) 105
GlaI GCGC 1 cut(s) 464
HaeIII GGCC 2 cut(s) 316, 340
HhaI GCGC 1 cut(s) 465
Hin1II CATG 3 cut(s) 409, 443, 463
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HinfI GANTC 2 cut(s) 62, 259
HphI GGTGA 2 cut(s) 152, 389
Hpy188I TCNGA 2 cut(s) 205, 217
Hpy188III TCNNGA 4 cut(s) 20, 47, 110, 112
HpyAV CCTTC 5 cut(s) 131, 183, 364, 404, 481
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 405
Hsp92II CATG 3 cut(s) 409, 443, 463
HspAI GCGC 1 cut(s) 463
Kzo9I GATC 1 cut(s) 16
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 2 cut(s) 37, 266
LpnPI CCDG 9 cut(s) 32, 33, 147, 161, 199, 408, 431, 470, 475
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 361
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 8 cut(s) 26, 35, 62, 89, 155, 173, 192, 274
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 3 cut(s) 34, 244, 271
MluCI AATT 1 cut(s) 66
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 2 cut(s) 59, 313
MnlI CCTC 5 cut(s) 143, 269, 364, 367, 384
MseI TTAA 4 cut(s) 72, 171, 417, 476
Mva1269I GAATGC 1 cut(s) 10
NdeII GATC 1 cut(s) 16
NlaIII CATG 3 cut(s) 409, 443, 463
NspI RCATGY 1 cut(s) 443
PaeR7I CTCGAG 1 cut(s) 110
PceI AGGCCT 1 cut(s) 316
PciI ACATGT 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 186
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 259
PflFI GACNNNGTC 1 cut(s) 196
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PscI ACATGT 1 cut(s) 439
PsuI RGATCY 1 cut(s) 16
PsyI GACNNNGTC 1 cut(s) 196
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 4 cut(s) 72, 171, 417, 476
Sau3AI GATC 1 cut(s) 16
ScaI AGTACT 1 cut(s) 103
SchI GAGTC 1 cut(s) 56
SduI GDGCHC 3 cut(s) 34, 244, 271
SetI ASST 5 cut(s) 142, 229, 331, 356, 494
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SpeI ACTAGT 1 cut(s) 104
Sse9I AATT 1 cut(s) 66
SseBI AGGCCT 1 cut(s) 316
SspMI CTAG 1 cut(s) 105
StuI AGGCCT 1 cut(s) 316
TaaI ACNGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 111, 389
TasI AATT 1 cut(s) 66
TatI WGTACW 1 cut(s) 101
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 4 cut(s) 72, 171, 417, 476
Tru9I TTAA 4 cut(s) 72, 171, 417, 476
TscAI CASTG 2 cut(s) 16, 201
TspDTI ATGAA 2 cut(s) 17, 104
TspRI CASTG 2 cut(s) 16, 201
Tth111I GACNNNGTC 1 cut(s) 196
XceI RCATGY 1 cut(s) 443
XhoI CTCGAG 1 cut(s) 110
XspI CTAG 1 cut(s) 105
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.