Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8409007.1

Orthogroup ID

OG0007281

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1264

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8409007.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 643 bp

atggttacaactctatccagaatatctcaagggacacaaaatgcagatccgaatatggctgctgcatcccagactacttcaataaagggttcatctcttcagtgtcttgtgaatgtgcttaaatcactcgtagattgggaaaagtcacgtggagaatcagatagccagagtaaaaacactcggtctctggaaggagatgcttcagctaaagagtctgttgatgtgaaaagcaggcaagatacaaccactaactttgagaaggcaaaagctcataagtctacactggaagctgccatatctgagttcaacaggcgaccagtgaagggtgtagagtatctgagatcaaataaattagtggaaaacacacctagttcagttgcccaatttttgaaaagtactcccagtttggacaaggctatgattggggaatatttgggccatcatgaagaatttccgctttctgttatgcatgcttatgtagattccatgaaattttcgggaatgaagtttgatactgcaattcgtgaacttcttaaaggattccgacttccaggggaagctcaaaagatagatcgcatcatggaaaagtttgcagaaagatactgtgcagataatccaggcctcttcaaaaatgcagatactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

214

Amino Acids

23.71

Weight (kDa)

8.44

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43300 AT3G43300 AT3G43300
fragaria_vesca	FvH4_1g09670 FvH4_1g09670 FvH4_1g09670
malus_domestica	MD02G1105600.v1.1 MD15G1225500.v1.1
prunus_persica	Prupe.7G189500_v2.0.a1 Prupe.7G189500_v2.0.a1 Prupe.7G189500_v2.0.a1
pyrus_communis	pycom02g08360 pycom15g20030
rosa_chinensis	RchiOBHm_Chr2g0096511
rosa_laevigata	RLG00000016646
rosa_multiflora	Rmu_co8118764.1_g000001 Rmu_co8409007.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145570
rosa_rugosa	Rorug02G0058300 Rorug02G0058300
rosa_samantha	Rh2AG105300 Rh2BG107400 Rh2CG109200 Rh2DG108400
rosa_wichuraiana	Rw2G008140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	278
AciI	CCGC	1 cut(s)	455
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	2 cut(s)	449, 491
AcuI	CTGAAG	2 cut(s)	83, 186
AcvI	CACGTG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	4 cut(s)	81, 307, 391, 628
AjnI	CCWGG	2 cut(s)	550, 616
AluBI	AGCT	4 cut(s)	206, 269, 290, 560
AluI	AGCT	4 cut(s)	206, 269, 290, 560
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	641
AoxI	GGCC	2 cut(s)	436, 619
ApeKI	GCWGC	3 cut(s)	59, 62, 290
ApoI	RAATTY	2 cut(s)	449, 491
Asp700I	GAANNNNTTC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	436
BbrPI	CACGTG	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	46, 49, 277
BccI	CCATC	1 cut(s)	447
BciT130I	CCWGG	2 cut(s)	552, 618
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	369
BisI	GCNGC	3 cut(s)	60, 63, 291
BlsI	GCNGC	3 cut(s)	61, 64, 292
BmcAI	AGTACT	1 cut(s)	397
Bme1390I	CCNGG	2 cut(s)	552, 618
BmgT120I	GGNCC	1 cut(s)	436
BmrFI	CCNGG	2 cut(s)	552, 618
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	3 cut(s)	74, 187, 585
BmuI	ACTGGG	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	551
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	3 cut(s)	288, 317, 402
BseBI	CCWGG	2 cut(s)	552, 618
BseDI	CCNNGG	1 cut(s)	551
BseGI	GGATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	2 cut(s)	291, 329
BseNI	ACTGG	3 cut(s)	288, 317, 402
BseXI	GCAGC	3 cut(s)	46, 49, 277
BsgI	GTGCAG	1 cut(s)	627
BshFI	GGCC	2 cut(s)	438, 621
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	438, 621
Bso31I	GGTCTC	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	46, 341, 571
BspACI	CCGC	1 cut(s)	455
BspANI	GGCC	2 cut(s)	438, 621
BspCNI	CTCAG	2 cut(s)	292, 330
BspHI	TCATGA	1 cut(s)	442
BspPI	GGATC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	189
BsrI	ACTGG	3 cut(s)	288, 317, 402
BssECI	CCNNGG	1 cut(s)	551
BssMI	GATC	3 cut(s)	46, 341, 571
Bst2UI	CCWGG	2 cut(s)	552, 618
Bst4CI	ACNGT	1 cut(s)	605
Bst6I	CTCTTC	2 cut(s)	102, 629
BstBAI	YACGTR	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	233, 471
BstDEI	CTNAG	2 cut(s)	300, 338
BstF5I	GGATG	1 cut(s)	65
BstKTI	GATC	3 cut(s)	49, 344, 574
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	3 cut(s)	46, 341, 571
BstNI	CCWGG	2 cut(s)	552, 618
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	2 cut(s)	550, 616
BstV1I	GCAGC	3 cut(s)	46, 49, 277
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	438, 621
BtsCI	GGATG	1 cut(s)	65
BtsIMutI	CAGTG	3 cut(s)	107, 281, 324
Cac8I	GCNNGC	2 cut(s)	233, 471
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	396
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	4 cut(s)	443, 470, 487, 580
CviJI	RGCY	9 cut(s)	59, 165, 206, 269, 290, 416, 438, 560, 621
CviKI_1	RGCY	9 cut(s)	59, 165, 206, 269, 290, 416, 438, 560, 621
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	2 cut(s)	300, 338
DpnI	GATC	3 cut(s)	48, 343, 573
DpnII	GATC	3 cut(s)	46, 341, 571
Eam1104I	CTCTTC	2 cut(s)	102, 629
EarI	CTCTTC	2 cut(s)	102, 629
Eco147I	AGGCCT	1 cut(s)	621
Eco31I	GGTCTC	1 cut(s)	189
Eco57I	CTGAAG	2 cut(s)	83, 186
Eco72I	CACGTG	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	550, 616
EcoT22I	ATGCAT	1 cut(s)	471
FaeI	CATG	4 cut(s)	446, 473, 490, 583
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	4 cut(s)	442, 469, 486, 579
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	3 cut(s)	60, 63, 291
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	3 cut(s)	60, 63, 291
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	3 cut(s)	60, 63, 291
HaeIII	GGCC	2 cut(s)	438, 621
Hin1II	CATG	4 cut(s)	446, 473, 490, 583
HinfI	GANTC	4 cut(s)	155, 212, 482, 540
Hpy166II	GTNNAC	2 cut(s)	279, 527
Hpy188I	TCNGA	5 cut(s)	51, 160, 301, 339, 545
Hpy188III	TCNNGA	5 cut(s)	18, 188, 443, 498, 524
Hpy8I	GTNNAC	2 cut(s)	279, 527
HpyAV	CCTTC	3 cut(s)	185, 253, 316
HpyCH4III	ACNGT	1 cut(s)	605
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	7 cut(s)	44, 65, 469, 518, 593, 608, 635
HpyF3I	CTNAG	2 cut(s)	300, 338
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	4 cut(s)	446, 473, 490, 583
Kzo9I	GATC	3 cut(s)	46, 341, 571
Lsp1109I	GCAGC	3 cut(s)	46, 49, 277
LweI	GCATC	3 cut(s)	74, 187, 585
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	2 cut(s)	4, 144
MalI	GATC	3 cut(s)	48, 343, 573
MboI	GATC	3 cut(s)	46, 341, 571
MboII	GAAGA	3 cut(s)	89, 458, 616
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	5 cut(s)	350, 383, 449, 491, 519
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	568
MnlI	CCTC	1 cut(s)	632
Mph1103I	ATGCAT	1 cut(s)	471
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	2 cut(s)	120, 534
MslI	CAYNNNNRTG	1 cut(s)	474
MspR9I	CCNGG	2 cut(s)	552, 618
MvaI	CCWGG	2 cut(s)	552, 618
NdeII	GATC	3 cut(s)	46, 341, 571
NlaIII	CATG	4 cut(s)	446, 473, 490, 583
NmuCI	GTSAC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	471
NspI	RCATGY	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	473
PagI	TCATGA	1 cut(s)	442
PceI	AGGCCT	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	3 cut(s)	155, 482, 540
PkrI	GCNGC	3 cut(s)	61, 64, 292
PleI	GAGTC	1 cut(s)	220
PmaCI	CACGTG	1 cut(s)	149
PmlI	CACGTG	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	220
Ppu21I	YACGTR	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	550, 616
PspCI	CACGTG	1 cut(s)	149
PspGI	CCWGG	2 cut(s)	550, 616
PspPI	GGNCC	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	2 cut(s)	120, 534
SatI	GCNGC	3 cut(s)	60, 63, 291
Sau3AI	GATC	3 cut(s)	46, 341, 571
Sau96I	GGNCC	1 cut(s)	436
ScaI	AGTACT	1 cut(s)	397
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	552, 618
SetI	ASST	6 cut(s)	151, 208, 271, 292, 370, 562
SfaNI	GCATC	3 cut(s)	74, 187, 585
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	5 cut(s)	350, 383, 449, 491, 519
SseBI	AGGCCT	1 cut(s)	621
SsiI	CCGC	1 cut(s)	455
SspI	AATATT	1 cut(s)	431
SspMI	CTAG	1 cut(s)	369
StuI	AGGCCT	1 cut(s)	621
StyD4I	CCNGG	2 cut(s)	550, 616
TaaI	ACNGT	1 cut(s)	605
TaiI	ACGT	1 cut(s)	151
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	5 cut(s)	350, 383, 449, 491, 519
TatI	WGTACW	1 cut(s)	395
TfiI	GAWTC	3 cut(s)	155, 482, 540
Tru1I	TTAA	2 cut(s)	120, 534
Tru9I	TTAA	2 cut(s)	120, 534
TscAI	CASTG	3 cut(s)	107, 288, 324
TseFI	GTSAC	1 cut(s)	144
TseI	GCWGC	3 cut(s)	59, 62, 290
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	4 cut(s)	81, 459, 503, 518
TspRI	CASTG	3 cut(s)	107, 288, 324
XapI	RAATTY	2 cut(s)	449, 491
XceI	RCATGY	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	1 cut(s)	369
ZrmI	AGTACT	1 cut(s)	397
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.