Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8158242.1

Orthogroup ID

OG0012501

Physical Location & Seq

Genomic Coordinates Reverse (-)

249 .. 659

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8158242.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

cggcgccggccaccattgccgacaaaaccaagcacctcctacgaggacaatgtgaacagcggctgccagagcccgctgattccgattccgccgccgccgcctccgttcaaaatgccggagctgaagtttttcgtgaagggagactttgttaagatacggagcggtcagagctcacggtgtgggtcccctgaaccggcggaggaagatgatgcaatgccaggtggcaagggagagtcacagtcatcgacagtgaagataacagacggtggagatggagctggtggcgggtcgccgtcggtgttctgccccagccctgatgttaacacgaaagctgacgacttcattgcgaggcttagagatgagtggaggctcgagaagatgaactcactcagggaaaagaagatgaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

DUF761

Protein Analysis

136

Amino Acids

14.78

Weight (kDa)

8.49

Isoelectric Point (pI)

87.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57070
fragaria_vesca	FvH4_1g08080
malus_domestica	MD02G1085400.v1.1 MD15G1212500.v1.1
prunus_persica	Prupe.7G204200_v2.0.a1
pyrus_communis	pycom02g06820 pycom15g18880
rosa_chinensis	RchiOBHm_Chr2g0094141
rosa_laevigata	RLG00000016459
rosa_multiflora	Rmu_co8158242.1_g000001 Rmu_co8328587.1_g000001 Rmu_sc0017959.1_g000003 Rmu_ssc0000149.1_g000005
rosa_roxburghii	Rroxscaffold_2G00147450
rosa_rugosa	Rorug02G0041200
rosa_samantha	Rh2AG088900 Rh2BG089000 Rh2CG091400 Rh2DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	3
AccBSI	CCGCTC	1 cut(s)	162
AciI	CCGC	9 cut(s)	60, 74, 89, 92, 95, 98, 162, 197, 285
AcoI	YGGCCR	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	4
AdeI	CACNNNGTG	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	4 cut(s)	121, 171, 278, 332
AluI	AGCT	4 cut(s)	121, 171, 278, 332
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	135
AlwNI	CAGNNNCTG	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	183
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	3
BanII	GRGCYC	2 cut(s)	74, 173
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	277
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	7
BisI	GCNGC	5 cut(s)	61, 64, 92, 95, 98
BlsI	GCNGC	5 cut(s)	62, 65, 93, 96, 99
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	3 cut(s)	5, 184, 185
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	4
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 132, 140, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	2 cut(s)	6, 193
Bse3DI	GCAATG	3 cut(s)	14, 219, 342
BseBI	CCWGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	3 cut(s)	14, 219, 342
BseMII	CTCAG	1 cut(s)	403
BseXI	GCAGC	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	308
BshFI	GGCC	1 cut(s)	10
BshNI	GGYRCC	1 cut(s)	3
BsiHKAI	GWGCWC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	7, 116, 194
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	74, 173
BspACI	CCGC	9 cut(s)	60, 74, 89, 92, 95, 98, 162, 197, 285
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	402
BspLI	GGNNCC	3 cut(s)	5, 184, 185
BspT107I	GGYRCC	1 cut(s)	3
BsrBI	CCGCTC	1 cut(s)	162
BsrDI	GCAATG	3 cut(s)	14, 219, 342
BsrFI	RCCGGY	2 cut(s)	6, 193
BssAI	RCCGGY	2 cut(s)	6, 193
BssNI	GRCGYC	1 cut(s)	4
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	4 cut(s)	177, 240, 250, 266
BstACI	GRCGYC	1 cut(s)	4
BstC8I	GCNNGC	2 cut(s)	8, 74
BstDEI	CTNAG	2 cut(s)	353, 389
BstH2I	RGCGCY	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 69, 97, 168
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	8, 74
CaiI	CAGNNNCTG	1 cut(s)	63
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	2 cut(s)	6, 193
Cfr13I	GGNCC	1 cut(s)	183
DdeI	CTNAG	2 cut(s)	353, 389
DinI	GGCGCC	1 cut(s)	5
DraIII	CACNNNGTG	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	8
EciI	GGCGGA	2 cut(s)	78, 212
Ecl136II	GAGCTC	1 cut(s)	171
Eco24I	GRGCYC	2 cut(s)	74, 173
Eco47I	GGWCC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	371
EcoICRI	GAGCTC	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	217
EcoT38I	GRGCYC	2 cut(s)	74, 173
EgeI	GGCGCC	1 cut(s)	5
EheI	GGCGCC	1 cut(s)	5
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	1 cut(s)	169
FauI	CCCGC	2 cut(s)	81, 278
Fnu4HI	GCNGC	5 cut(s)	61, 64, 92, 95, 98
FriOI	GRGCYC	2 cut(s)	74, 173
Fsp4HI	GCNGC	5 cut(s)	61, 64, 92, 95, 98
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	5 cut(s)	61, 64, 92, 95, 98
GsaI	CCCAGC	1 cut(s)	312
HaeII	RGCGCY	1 cut(s)	7
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	3 cut(s)	7, 116, 194
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	4
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	3 cut(s)	79, 85, 233
HpaI	GTTAAC	1 cut(s)	322
HpaII	CCGG	3 cut(s)	7, 116, 194
Hpy166II	GTNNAC	2 cut(s)	55, 322
Hpy188I	TCNGA	2 cut(s)	84, 168
Hpy188III	TCNNGA	2 cut(s)	133, 373
Hpy8I	GTNNAC	2 cut(s)	55, 322
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	4 cut(s)	177, 240, 250, 266
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 69, 97, 168
HpyF3I	CTNAG	2 cut(s)	353, 389
Hsp92I	GRCGYC	1 cut(s)	4
HspAI	GCGC	1 cut(s)	4
KasI	GGCGCC	1 cut(s)	3
KflI	GGGWCCC	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	6
KroNI	GCCGGC	1 cut(s)	8
KspAI	GTTAAC	1 cut(s)	322
LmnI	GCTCC	3 cut(s)	118, 159, 275
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	234
MbiI	CCGCTC	1 cut(s)	162
MboII	GAAGA	3 cut(s)	215, 265, 388
MhlI	GDGCHC	2 cut(s)	74, 173
Mly113I	GGCGCC	1 cut(s)	4
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	6 cut(s)	37, 46, 111, 193, 342, 360
MroNI	GCCGGC	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	2 cut(s)	150, 321
MspA1I	CMGCKG	2 cut(s)	60, 76
MspI	CCGG	3 cut(s)	7, 116, 194
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	4 cut(s)	16, 69, 97, 168
NaeI	GCCGGC	1 cut(s)	8
NarI	GGCGCC	1 cut(s)	4
NgoMIV	GCCGGC	1 cut(s)	6
NlaIV	GGNNCC	3 cut(s)	5, 184, 185
NmuCI	GTSAC	1 cut(s)	234
PaeR7I	CTCGAG	1 cut(s)	371
PdiI	GCCGGC	1 cut(s)	8
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	79, 85
PkrI	GCNGC	5 cut(s)	62, 65, 93, 96, 99
PleI	GAGTC	1 cut(s)	241
PluTI	GGCGCC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	3 cut(s)	5, 184, 185
PspPI	GGNCC	1 cut(s)	183
PspPPI	RGGWCCY	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	150, 321
SatI	GCNGC	5 cut(s)	61, 64, 92, 95, 98
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	2 cut(s)	74, 173
SetI	ASST	6 cut(s)	38, 123, 173, 223, 280, 334
SfaNI	GCATC	1 cut(s)	199
SfoI	GGCGCC	1 cut(s)	5
Sfr274I	CTCGAG	1 cut(s)	371
SinI	GGWCC	1 cut(s)	183
SlaI	CTCGAG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SsiI	CCGC	9 cut(s)	60, 74, 89, 92, 95, 98, 162, 197, 285
SspDI	GGCGCC	1 cut(s)	3
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	217
TaaI	ACNGT	4 cut(s)	177, 240, 250, 266
TaqI	TCGA	2 cut(s)	245, 372
TauI	GCSGC	4 cut(s)	63, 94, 97, 100
TfiI	GAWTC	2 cut(s)	79, 85
Tru1I	TTAA	2 cut(s)	150, 321
Tru9I	TTAA	2 cut(s)	150, 321
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	2 cut(s)	331, 395
TspGWI	ACGGA	2 cut(s)	93, 172
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	183
XhoI	CTCGAG	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.