Rmu_sc0017959.1_g000003

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017959.1
OG0012501
Physical Location & Seq
Reverse (-)
15596 .. 16129
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017959.1_g000003.1.cds

Sequence Viewer

Length: 534 bp
ctcctccccaccatcatcttactcttcctcatctacaccatccctccacttctatccctcacctcccaactcctccagcccaccgtctccgtcaagagaagctgggactccctcaacgtcttccttgtcatcttcgctattctctgcggtgttttcgctagaaaaaacgacgacggctggcctgatcccgacgacgatcgcgtccatattcacaatgcttccgaccctttacttggttcggccattaacagaaccacctcatctccacaatcagaaccagcacttcttataccgcagcagcaatggtttggatactcggagagaacgtccaagatgtatgacactccggttaggaccccggaaaacgtcggcggcggccggttgaggaggagaagctcgtacccggatctgaggcaagctgagtctctgtggcaaactgtagatgatgatcaaagtaagtctcagtttcgtttctttgatgatttcgaaatcagcaactatagaactcaccgacaccacagagagagcagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
DUF761

Protein Analysis

177

Amino Acids

20.37

Weight (kDa)

6.21

Isoelectric Point (pI)

69.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AccII CGCG 1 cut(s) 201
AciI CCGC 4 cut(s) 147, 293, 372, 375
AclWI GGATC 2 cut(s) 179, 414
AcoI YGGCCR 2 cut(s) 240, 376
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 233
AluBI AGCT 4 cut(s) 102, 396, 419, 531
AluI AGCT 4 cut(s) 102, 396, 419, 531
Alw26I GTCTC 3 cut(s) 91, 429, 465
AlwI GGATC 2 cut(s) 179, 414
AoxI GGCC 3 cut(s) 179, 240, 376
ApeKI GCWGC 3 cut(s) 295, 298, 528
AspS9I GGNCC 1 cut(s) 354
AsuC2I CCSGG 2 cut(s) 359, 404
AsuHPI GGTGA 2 cut(s) 52, 500
AsuII TTCGAA 1 cut(s) 486
AvaII GGWCC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 112
BbvI GCAGC 2 cut(s) 307, 310
BccI CCATC 2 cut(s) 20, 47
BceAI ACGGC 1 cut(s) 190
BciVI GTATCC 1 cut(s) 305
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 2 cut(s) 359, 404
BcoDI GTCTC 3 cut(s) 91, 429, 465
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 2 cut(s) 438, 499
BfuI GTATCC 1 cut(s) 305
BisI GCNGC 5 cut(s) 296, 299, 373, 376, 529
BlsI GCNGC 5 cut(s) 297, 300, 374, 377, 530
Bme1390I CCNGG 2 cut(s) 359, 404
Bme18I GGWCC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 356
BmrFI CCNGG 2 cut(s) 359, 404
BpiI GAAGAC 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 59
Bpu14I TTCGAA 1 cut(s) 486
BpuMI CCSGG 2 cut(s) 359, 404
BsaBI GATNNNNATC 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 357
BsaWI WCCGGW 1 cut(s) 346
BsaXI ACNNNNNCTCC 6 cut(s) 28, 58, 247, 277, 311, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse118I RCCGGY 1 cut(s) 378
Bse3DI GCAATG 1 cut(s) 308
Bse8I GATNNNNATC 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 1 cut(s) 39
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 308
BseMII CTCAG 3 cut(s) 401, 411, 476
BseRI GAGGAG 3 cut(s) 62, 400, 403
BseX3I CGGCCG 1 cut(s) 376
BseXI GCAGC 2 cut(s) 307, 310
BseYI CCCAGC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 201
Bsh1285I CGRYCG 2 cut(s) 199, 379
BshFI GGCC 3 cut(s) 181, 242, 378
BsiEI CGRYCG 2 cut(s) 199, 379
BsiSI CCGG 4 cut(s) 347, 359, 379, 404
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 3 cut(s) 91, 429, 465
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 3 cut(s) 181, 242, 378
Bsp119I TTCGAA 1 cut(s) 486
Bsp143I GATC 4 cut(s) 184, 196, 406, 448
BspACI CCGC 4 cut(s) 147, 293, 372, 375
BspANI GGCC 3 cut(s) 181, 242, 378
BspCNI CTCAG 3 cut(s) 402, 412, 475
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 356
BspPI GGATC 2 cut(s) 179, 414
BspT104I TTCGAA 1 cut(s) 486
BsrDI GCAATG 1 cut(s) 308
BsrFI RCCGGY 1 cut(s) 378
BssAI RCCGGY 1 cut(s) 378
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 4 cut(s) 184, 196, 406, 448
Bst4CI ACNGT 2 cut(s) 85, 439
Bst6I CTCTTC 1 cut(s) 29
BstBI TTCGAA 1 cut(s) 486
BstC8I GCNNGC 2 cut(s) 179, 417
BstDEI CTNAG 3 cut(s) 410, 420, 462
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 4 cut(s) 187, 199, 409, 451
BstMAI GTCTC 3 cut(s) 91, 429, 465
BstMBI GATC 4 cut(s) 184, 196, 406, 448
BstMCI CGRYCG 2 cut(s) 199, 379
BstSCI CCNGG 2 cut(s) 357, 402
BstSFI CTRYAG 2 cut(s) 438, 499
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 307, 310
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BstZI CGGCCG 1 cut(s) 376
BsuI GTATCC 1 cut(s) 305
BsuRI GGCC 3 cut(s) 181, 242, 378
BtsCI GGATG 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 179, 417
Cfr10I RCCGGY 1 cut(s) 378
Cfr13I GGNCC 1 cut(s) 354
CseI GACGC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 400
CviJI RGCY 9 cut(s) 79, 102, 177, 181, 242, 378, 396, 419, 531
CviKI_1 RGCY 9 cut(s) 79, 102, 177, 181, 242, 378, 396, 419, 531
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 3 cut(s) 410, 420, 462
DpnI GATC 4 cut(s) 186, 198, 408, 450
DpnII GATC 4 cut(s) 184, 196, 406, 448
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 2 cut(s) 240, 376
EagI CGGCCG 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
EclXI CGGCCG 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 354
Eco52I CGGCCG 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 354
Esp3I CGTCTC 1 cut(s) 91
FaiI YATR 4 cut(s) 207, 290, 339, 501
FaqI GGGAC 1 cut(s) 119
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 5 cut(s) 296, 299, 373, 376, 529
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 5 cut(s) 296, 299, 373, 376, 529
FspBI CTAG 1 cut(s) 159
GluI GCNGC 5 cut(s) 296, 299, 373, 376, 529
GsaI CCCAGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 3 cut(s) 181, 242, 378
HapII CCGG 4 cut(s) 347, 359, 379, 404
HgaI GACGC 1 cut(s) 190
HinfI GANTC 2 cut(s) 107, 422
HpaII CCGG 4 cut(s) 347, 359, 379, 404
HphI GGTGA 2 cut(s) 52, 500
Hpy188I TCNGA 4 cut(s) 223, 274, 319, 411
Hpy188III TCNNGA 2 cut(s) 94, 188
Hpy99I CGWCG 5 cut(s) 173, 176, 194, 197, 371
HpyCH4III ACNGT 2 cut(s) 85, 439
HpyCH4IV ACGT 3 cut(s) 117, 326, 366
HpyF3I CTNAG 3 cut(s) 410, 420, 462
HpySE526I ACGT 3 cut(s) 117, 326, 366
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 4 cut(s) 184, 196, 406, 448
LpnPI CCDG 9 cut(s) 88, 89, 163, 195, 291, 360, 372, 392, 417
Lsp1109I GCAGC 2 cut(s) 307, 310
MaeI CTAG 1 cut(s) 159
MaeII ACGT 3 cut(s) 117, 326, 366
MalI GATC 4 cut(s) 186, 198, 408, 450
MboI GATC 4 cut(s) 184, 196, 406, 448
MboII GAAGA 3 cut(s) 16, 112, 124
MflI RGATCY 1 cut(s) 406
MlyI GAGTC 2 cut(s) 101, 431
MmeI TCCRAC 1 cut(s) 246
MseI TTAA 1 cut(s) 246
MspI CCGG 4 cut(s) 347, 359, 379, 404
MspR9I CCNGG 2 cut(s) 359, 404
MvnI CGCG 1 cut(s) 201
NciI CCSGG 2 cut(s) 359, 404
NdeII GATC 4 cut(s) 184, 196, 406, 448
NlaIV GGNNCC 1 cut(s) 356
NspV TTCGAA 1 cut(s) 486
PcsI WCGNNNNNNNCGW 2 cut(s) 198, 323
PkrI GCNGC 5 cut(s) 297, 300, 374, 377, 530
Ple19I CGATCG 1 cut(s) 199
PleI GAGTC 2 cut(s) 101, 430
PpsI GAGTC 2 cut(s) 101, 430
PpuMI RGGWCCY 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 1 cut(s) 354
PspPPI RGGWCCY 1 cut(s) 354
PsuI RGATCY 1 cut(s) 406
PvuI CGATCG 1 cut(s) 199
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 5 cut(s) 296, 299, 373, 376, 529
Sau3AI GATC 4 cut(s) 184, 196, 406, 448
Sau96I GGNCC 1 cut(s) 354
SchI GAGTC 2 cut(s) 101, 431
ScrFI CCNGG 2 cut(s) 359, 404
SetI ASST 9 cut(s) 65, 104, 120, 260, 329, 369, 398, 421, 533
SfcI CTRYAG 2 cut(s) 438, 499
SfuI TTCGAA 1 cut(s) 486
SinI GGWCC 1 cut(s) 354
SsiI CCGC 4 cut(s) 147, 293, 372, 375
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 357, 402
TaaI ACNGT 2 cut(s) 85, 439
TaiI ACGT 3 cut(s) 120, 329, 369
TaqI TCGA 1 cut(s) 486
TauI GCSGC 2 cut(s) 375, 378
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseI GCWGC 3 cut(s) 295, 298, 528
TspGWI ACGGA 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 354
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.