Rorug02G0041200

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012501
Physical Location & Seq
Reverse (-)
3220683 .. 3222634
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0041200.1

Sequence Viewer

Length: 504 bp
ATGGATTCCAACTTAAGAAAGCTTTTCCAAACTTCAAACGGCGACGTTGGCACTGCTGCTCAGTATTCTCCCCCATATCTACCCACGGACTGTTATGGAAGCGACTCGTCGCAGTTTCCGTCGAGTAATTTGTTTGCGGCGGCCGGAGATGGAATATGGGACAATGGAGCTTCGTGTGGGAGGCAGTACTTGGTGAGATGCATTAGCGCGGCCGTAACGGGGACGTGTATTCCGGACACGACGATTCAGATAAGAATTGTGGACTATGCTGCCGGCGTTGCTTCGAAGCCATCGGCGGATGGCACCACCATGGTGTTGTCTCAGACGGCTTTCGCTGCTATTGCCAACTCAACGGCTACTTCCATCAACATTGAATTTCAACAGACAAATACCTTGACCCGACACGAACTCAACCCGACACGACCCATTGACAGCCCTAGTTTGGATTGTGTTTCATATATTCATCAGCGGAAGGTAACTAGCTGGAGCGATCCATGGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
DUF761

Protein Analysis

167

Amino Acids

17.89

Weight (kDa)

4.87

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 51 - 126 5.9e-09 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AccII CGCG 1 cut(s) 209
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 5 cut(s) 137, 140, 209, 296, 469
AclWI GGATC 1 cut(s) 485
AcoI YGGCCR 3 cut(s) 141, 210, 497
AcsI RAATTY 1 cut(s) 374
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 219, 442
AflII CTTAAG 1 cut(s) 13
AflIII ACRYGT 1 cut(s) 224
AgsI TTSAA 3 cut(s) 36, 374, 380
AjiI CACGTC 1 cut(s) 225
AleI CACNNNNGTG 1 cut(s) 311
AluBI AGCT 3 cut(s) 22, 170, 483
AluI AGCT 3 cut(s) 22, 170, 483
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 1 cut(s) 485
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 3 cut(s) 141, 210, 497
ApeKI GCWGC 3 cut(s) 56, 269, 335
ApoI RAATTY 1 cut(s) 374
AspLEI GCGC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 205
AsuII TTCGAA 1 cut(s) 284
BanI GGYRCC 1 cut(s) 302
BbvI GCAGC 3 cut(s) 43, 256, 322
BccI CCATC 4 cut(s) 143, 293, 298, 371
BceAI ACGGC 5 cut(s) 55, 197, 342, 369, 484
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 2 cut(s) 438, 480
BfrI CTTAAG 1 cut(s) 13
BisI GCNGC 6 cut(s) 57, 138, 141, 210, 270, 336
BlsI GCNGC 6 cut(s) 58, 139, 142, 211, 271, 337
BmcAI AGTACT 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 304
BmsI GCATC 1 cut(s) 188
Bpu14I TTCGAA 1 cut(s) 284
BsaJI CCNNGG 3 cut(s) 84, 309, 494
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 442
Bse118I RCCGGY 1 cut(s) 272
BseAI TCCGGA 1 cut(s) 232
BseDI CCNNGG 3 cut(s) 84, 309, 494
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 2 cut(s) 219, 442
BseMII CTCAG 2 cut(s) 74, 335
BseX3I CGGCCG 2 cut(s) 141, 210
BseXI GCAGC 3 cut(s) 43, 256, 322
Bsh1236I CGCG 1 cut(s) 209
Bsh1285I CGRYCG 2 cut(s) 144, 213
BshFI GGCC 3 cut(s) 143, 212, 499
BshNI GGYRCC 1 cut(s) 302
BsiEI CGRYCG 2 cut(s) 144, 213
BsiSI CCGG 3 cut(s) 144, 233, 273
BslFI GGGAC 2 cut(s) 173, 235
BslI CCNNNNNNNGG 2 cut(s) 219, 442
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 2 cut(s) 173, 235
BsnI GGCC 3 cut(s) 143, 212, 499
Bsp119I TTCGAA 1 cut(s) 284
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 1 cut(s) 490
Bsp19I CCATGG 2 cut(s) 309, 494
BspACI CCGC 5 cut(s) 137, 140, 209, 296, 469
BspANI GGCC 3 cut(s) 143, 212, 499
BspCNI CTCAG 2 cut(s) 73, 334
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 304
BspPI GGATC 1 cut(s) 485
BspT104I TTCGAA 1 cut(s) 284
BspT107I GGYRCC 1 cut(s) 302
BspTI CTTAAG 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 84, 309, 494
BssMI GATC 1 cut(s) 490
BssT1I CCWWGG 2 cut(s) 309, 494
Bst4CI ACNGT 1 cut(s) 92
BstAFI CTTAAG 1 cut(s) 13
BstBI TTCGAA 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 2 cut(s) 60, 321
BstDSI CCRYGG 3 cut(s) 84, 309, 494
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 209
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 1 cut(s) 493
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 1 cut(s) 490
BstMCI CGRYCG 2 cut(s) 144, 213
BstMWI GCNNNNNNNGC 4 cut(s) 48, 278, 335, 341
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 3 cut(s) 43, 256, 322
BstZI CGGCCG 2 cut(s) 141, 210
BsuRI GGCC 3 cut(s) 143, 212, 499
BtgI CCRYGG 3 cut(s) 84, 309, 494
BtrI CACGTC 1 cut(s) 225
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 274
CfoI GCGC 1 cut(s) 209
Cfr10I RCCGGY 1 cut(s) 272
Csp6I GTAC 1 cut(s) 187
CviAII CATG 2 cut(s) 310, 495
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 2 cut(s) 60, 321
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
EaeI YGGCCR 3 cut(s) 141, 210, 497
EagI CGGCCG 2 cut(s) 141, 210
EciI GGCGGA 1 cut(s) 311
EclXI CGGCCG 2 cut(s) 141, 210
Eco130I CCWWGG 2 cut(s) 309, 494
Eco52I CGGCCG 2 cut(s) 141, 210
EcoT14I CCWWGG 2 cut(s) 309, 494
EcoT22I ATGCAT 1 cut(s) 203
ErhI CCWWGG 2 cut(s) 309, 494
FaeI CATG 2 cut(s) 313, 498
FaiI YATR 8 cut(s) 76, 96, 157, 267, 311, 457, 459, 496
FaqI GGGAC 2 cut(s) 173, 235
FatI CATG 2 cut(s) 309, 494
Fnu4HI GCNGC 6 cut(s) 57, 138, 141, 210, 270, 336
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 6 cut(s) 57, 138, 141, 210, 270, 336
FspBI CTAG 2 cut(s) 438, 480
GlaI GCGC 1 cut(s) 208
GluI GCNGC 6 cut(s) 57, 138, 141, 210, 270, 336
HaeIII GGCC 3 cut(s) 143, 212, 499
HapII CCGG 3 cut(s) 144, 233, 273
HhaI GCGC 1 cut(s) 209
Hin1II CATG 2 cut(s) 313, 498
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 3 cut(s) 5, 104, 244
HpaII CCGG 3 cut(s) 144, 233, 273
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 249, 324
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 4 cut(s) 47, 112, 124, 244
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 2 cut(s) 45, 224
HpyCH4V TGCA 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 278, 335, 341
HpyF3I CTNAG 2 cut(s) 60, 321
HpySE526I ACGT 2 cut(s) 45, 224
Hsp92II CATG 2 cut(s) 313, 498
HspAI GCGC 1 cut(s) 207
Kpn2I TCCGGA 1 cut(s) 232
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
Kzo9I GATC 1 cut(s) 490
LmnI GCTCC 2 cut(s) 167, 486
LpnPI CCDG 4 cut(s) 157, 246, 286, 469
Lsp1109I GCAGC 3 cut(s) 43, 256, 322
LweI GCATC 1 cut(s) 188
MaeI CTAG 2 cut(s) 438, 480
MaeII ACGT 2 cut(s) 45, 224
MaeIII GTNAC 2 cut(s) 214, 475
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MluCI AATT 3 cut(s) 127, 255, 374
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 1 cut(s) 174
Mph1103I ATGCAT 1 cut(s) 203
MroI TCCGGA 1 cut(s) 232
MroNI GCCGGC 1 cut(s) 272
MseI TTAA 1 cut(s) 14
MslI CAYNNNNRTG 3 cut(s) 308, 311, 499
MspA1I CMGCKG 1 cut(s) 469
MspCI CTTAAG 1 cut(s) 13
MspI CCGG 3 cut(s) 144, 233, 273
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 4 cut(s) 48, 278, 335, 341
NaeI GCCGGC 1 cut(s) 274
NcoI CCATGG 2 cut(s) 309, 494
NdeII GATC 1 cut(s) 490
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 2 cut(s) 313, 498
NlaIV GGNNCC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 203
NspV TTCGAA 1 cut(s) 284
OliI CACNNNNGTG 1 cut(s) 311
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PdiI GCCGGC 1 cut(s) 274
PfeI GAWTC 2 cut(s) 5, 244
PkrI GCNGC 6 cut(s) 58, 139, 142, 211, 271, 337
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 304
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 3 cut(s) 308, 311, 499
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 6 cut(s) 57, 138, 141, 210, 270, 336
Sau3AI GATC 1 cut(s) 490
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 1 cut(s) 98
SetI ASST 7 cut(s) 24, 48, 172, 227, 395, 477, 485
SfaNI GCATC 1 cut(s) 188
SfuI TTCGAA 1 cut(s) 284
SmiMI CAYNNNNRTG 3 cut(s) 308, 311, 499
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 3 cut(s) 127, 255, 374
SsiI CCGC 5 cut(s) 137, 140, 209, 296, 469
SspMI CTAG 2 cut(s) 438, 480
StyI CCWWGG 2 cut(s) 309, 494
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 2 cut(s) 48, 227
TaqI TCGA 2 cut(s) 122, 284
TasI AATT 3 cut(s) 127, 255, 374
TatI WGTACW 1 cut(s) 186
TauI GCSGC 3 cut(s) 140, 143, 212
TfiI GAWTC 2 cut(s) 5, 244
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 58
TseI GCWGC 3 cut(s) 56, 269, 335
TspDTI ATGAA 2 cut(s) 444, 452
TspGWI ACGGA 2 cut(s) 101, 108
TspRI CASTG 1 cut(s) 58
Vha464I CTTAAG 1 cut(s) 13
XapI RAATTY 1 cut(s) 374
XspI CTAG 2 cut(s) 438, 480
ZrmI AGTACT 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.