Rmu_co8328587.1_g000001

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8328587.1
OG0012501
Physical Location & Seq
Reverse (-)
2 .. 815
814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8328587.1_g000001.1.cds

Sequence Viewer

Length: 814 bp
atgtatgacactccggttaggaccccggaaaacgtcggcggcggccggttgaggaggagaagctcgtacccggatctgaggcaagctgagtctctgtggcaaactgtagatgatgatcaaagtaagtctcagtttcgtttctttgatgatttcgaaatcagcaactatagaactcaccgacaccacagagagagcagctccgatgatgttaaggagattccggtggatactttcgtacttcaatcttcttcgccgccggctccaaagcccccggggccatcgccgccaccacctccgcctcctccgccgcgtcatgagaaacaaaggacgtatgagacggttggtcgacgtaaagtggaagatgtgaaagtcgaggaagttcgatctacgccaccaccgacacctccgcctctaccgccttcacggccagtagctccgccgtcgccaatgcgggttagatcggaccagaagcacgggaggcttgaacggaggaagagtaacgtgaagaaggagatagcgatggtatggaattcagttctttccaatcagagaaagagaaagaggaggcagaaggctacaagaaacaacatttacgatactgccactccggaacctccggcggaacaaccgcaaccgccgcctccacctccgccaccgccttcttctgtttttcataatttattcaagaagggaagcaaaactaaaaaggtacattcggtctcaaccacagcaccaccaccacctccaccgccgccgccgccgacagtttcagcacgaaaacatcaaacccggagctctaatccgccaccggcac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
DUF761

Protein Analysis

271

Amino Acids

30.55

Weight (kDa)

10.49

Isoelectric Point (pI)

96.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 346
AccII CGCG 1 cut(s) 310
AccIII TCCGGA 1 cut(s) 607
AclWI GGATC 1 cut(s) 81
AcoI YGGCCR 2 cut(s) 43, 425
AcsI RAATTY 1 cut(s) 529
AfaI GTAC 3 cut(s) 68, 237, 711
AgsI TTSAA 3 cut(s) 242, 485, 685
AhdI GACNNNNNGTC 1 cut(s) 342
AluBI AGCT 5 cut(s) 63, 86, 198, 434, 795
AluI AGCT 5 cut(s) 63, 86, 198, 434, 795
Alw21I GWGCWC 1 cut(s) 797
Alw26I GTCTC 4 cut(s) 96, 132, 329, 724
AlwI GGATC 1 cut(s) 81
Ama87I CYCGRG 1 cut(s) 271
Aor13HI TCCGGA 1 cut(s) 607
AoxI GGCC 3 cut(s) 43, 275, 425
ApeKI GCWGC 1 cut(s) 195
ApoI RAATTY 1 cut(s) 529
AspS9I GGNCC 3 cut(s) 21, 275, 463
AsuC2I CCSGG 5 cut(s) 26, 71, 272, 273, 790
AsuHPI GGTGA 1 cut(s) 167
AsuII TTCGAA 1 cut(s) 153
AvaI CYCGRG 1 cut(s) 271
AvaII GGWCC 2 cut(s) 21, 463
BaeI ACNNNNGTAYC 2 cut(s) 219, 252
BanII GRGCYC 1 cut(s) 797
Bbv12I GWGCWC 1 cut(s) 797
BbvI GCAGC 1 cut(s) 207
BccI CCATC 2 cut(s) 286, 514
BceAI ACGGC 2 cut(s) 424, 440
BciVI GTATCC 1 cut(s) 220
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 5 cut(s) 26, 71, 272, 273, 790
BcoDI GTCTC 4 cut(s) 96, 132, 329, 724
BfmI CTRYAG 2 cut(s) 105, 166
BfuI GTATCC 1 cut(s) 220
BglI GCCNNNNNGGC 2 cut(s) 274, 424
Bme1390I CCNGG 5 cut(s) 26, 71, 272, 273, 790
Bme18I GGWCC 2 cut(s) 21, 463
BmeRI GACNNNNNGTC 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 271
BmgT120I GGNCC 3 cut(s) 21, 275, 463
BmiI GGNNCC 4 cut(s) 23, 261, 276, 612
BmrFI CCNGG 5 cut(s) 26, 71, 272, 273, 790
BplI GAGNNNNNCTC 2 cut(s) 182, 214
Bpu14I TTCGAA 1 cut(s) 153
BpuMI CCSGG 5 cut(s) 26, 71, 272, 273, 790
BsaBI GATNNNNATC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 724
BsaJI CCNNGG 4 cut(s) 24, 270, 271, 272
BsaWI WCCGGW 3 cut(s) 13, 220, 607
BsaXI ACNNNNNCTCC 4 cut(s) 481, 511, 589, 619
Bse118I RCCGGY 3 cut(s) 45, 256, 808
Bse1I ACTGG 1 cut(s) 428
Bse8I GATNNNNATC 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 607
BseDI CCNNGG 4 cut(s) 24, 270, 271, 272
BseJI GATNNNNATC 1 cut(s) 114
BseMII CTCAG 3 cut(s) 68, 78, 143
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 4 cut(s) 67, 70, 291, 577
BseX3I CGGCCG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 3 cut(s) 45, 277, 427
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 797
BsiHKCI CYCGRG 1 cut(s) 271
BsmAI GTCTC 4 cut(s) 96, 132, 329, 724
BsmBI CGTCTC 1 cut(s) 329
BsnI GGCC 3 cut(s) 45, 277, 427
Bso31I GGTCTC 1 cut(s) 724
BsoBI CYCGRG 1 cut(s) 271
Bsp119I TTCGAA 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 797
Bsp13I TCCGGA 1 cut(s) 607
Bsp143I GATC 4 cut(s) 73, 115, 383, 458
BspANI GGCC 3 cut(s) 45, 277, 427
BspCNI CTCAG 3 cut(s) 69, 79, 142
BspEI TCCGGA 1 cut(s) 607
BspFNI CGCG 1 cut(s) 310
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 4 cut(s) 23, 261, 276, 612
BspPI GGATC 1 cut(s) 81
BspT104I TTCGAA 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 724
BsrFI RCCGGY 3 cut(s) 45, 256, 808
BsrI ACTGG 1 cut(s) 428
BssAI RCCGGY 3 cut(s) 45, 256, 808
BssECI CCNNGG 4 cut(s) 24, 270, 271, 272
BssMI GATC 4 cut(s) 73, 115, 383, 458
Bst4CI ACNGT 3 cut(s) 106, 340, 766
Bst6I CTCTTC 1 cut(s) 488
BstBI TTCGAA 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 84, 258
BstDEI CTNAG 3 cut(s) 77, 87, 129
BstFNI CGCG 1 cut(s) 310
BstKTI GATC 4 cut(s) 76, 118, 386, 461
BstMAI GTCTC 4 cut(s) 96, 132, 329, 724
BstMBI GATC 4 cut(s) 73, 115, 383, 458
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 8 cut(s) 274, 283, 304, 415, 424, 478, 637, 757
BstSCI CCNGG 5 cut(s) 24, 69, 270, 271, 788
BstSFI CTRYAG 2 cut(s) 105, 166
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BstZI CGGCCG 1 cut(s) 43
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 3 cut(s) 45, 277, 427
BtgZI GCGATG 2 cut(s) 264, 533
Cac8I GCNNGC 2 cut(s) 84, 258
CciI TCATGA 1 cut(s) 313
Cfr10I RCCGGY 3 cut(s) 45, 256, 808
Cfr13I GGNCC 3 cut(s) 21, 275, 463
Cfr9I CCCGGG 1 cut(s) 271
CseI GACGC 1 cut(s) 299
Csp6I GTAC 3 cut(s) 67, 236, 710
CviAII CATG 1 cut(s) 314
CviQI GTAC 3 cut(s) 67, 236, 710
DdeI CTNAG 3 cut(s) 77, 87, 129
DpnI GATC 4 cut(s) 75, 117, 385, 460
DpnII GATC 4 cut(s) 73, 115, 383, 458
DriI GACNNNNNGTC 1 cut(s) 342
EaeI YGGCCR 2 cut(s) 43, 425
EagI CGGCCG 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 488
Eam1105I GACNNNNNGTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 488
EciI GGCGGA 7 cut(s) 285, 294, 396, 426, 635, 639, 792
Ecl136II GAGCTC 1 cut(s) 795
EclXI CGGCCG 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 797
Eco31I GGTCTC 1 cut(s) 724
Eco47I GGWCC 2 cut(s) 21, 463
Eco52I CGGCCG 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 795
Eco88I CYCGRG 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 795
EcoO109I RGGNCCY 1 cut(s) 21
EcoRI GAATTC 1 cut(s) 529
EcoT38I GRGCYC 1 cut(s) 797
Esp3I CGTCTC 1 cut(s) 329
FaeI CATG 1 cut(s) 317
FaiI YATR 6 cut(s) 6, 168, 315, 333, 526, 675
FatI CATG 1 cut(s) 313
FauI CCCGC 1 cut(s) 444
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 1 cut(s) 346
FriOI GRGCYC 1 cut(s) 797
HaeIII GGCC 3 cut(s) 45, 277, 427
HgaI GACGC 1 cut(s) 299
Hin1II CATG 1 cut(s) 317
HincII GTYRAC 1 cut(s) 347
HindII GTYRAC 1 cut(s) 347
HinfI GANTC 2 cut(s) 89, 217
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 4 cut(s) 78, 202, 463, 549
Hpy188III TCNNGA 3 cut(s) 314, 608, 685
Hpy8I GTNNAC 1 cut(s) 347
Hpy99I CGWCG 3 cut(s) 38, 351, 445
HpyAV CCTTC 5 cut(s) 429, 502, 565, 669, 682
HpyCH4III ACNGT 3 cut(s) 106, 340, 766
HpyCH4IV ACGT 4 cut(s) 33, 329, 349, 501
HpyF10VI GCNNNNNNNGC 8 cut(s) 274, 283, 304, 415, 424, 478, 637, 757
HpyF3I CTNAG 3 cut(s) 77, 87, 129
HpySE526I ACGT 4 cut(s) 33, 329, 349, 501
Hsp92II CATG 1 cut(s) 317
Kpn2I TCCGGA 1 cut(s) 607
KroI GCCGGC 1 cut(s) 256
KroNI GCCGGC 1 cut(s) 258
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 4 cut(s) 73, 115, 383, 458
LmnI GCTCC 4 cut(s) 203, 265, 439, 792
Lsp1109I GCAGC 1 cut(s) 207
MaeII ACGT 4 cut(s) 33, 329, 349, 501
MaeIII GTNAC 1 cut(s) 497
MalI GATC 4 cut(s) 75, 117, 385, 460
MboI GATC 4 cut(s) 73, 115, 383, 458
MboII GAAGA 6 cut(s) 237, 240, 371, 505, 517, 654
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 797
MluCI AATT 2 cut(s) 529, 676
MlyI GAGTC 1 cut(s) 98
MroI TCCGGA 1 cut(s) 607
MroNI GCCGGC 1 cut(s) 256
MseI TTAA 1 cut(s) 210
MspR9I CCNGG 5 cut(s) 26, 71, 272, 273, 790
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 8 cut(s) 274, 283, 304, 415, 424, 478, 637, 757
NaeI GCCGGC 1 cut(s) 258
NciI CCSGG 5 cut(s) 26, 71, 272, 273, 790
NdeII GATC 4 cut(s) 73, 115, 383, 458
NgoMIV GCCGGC 1 cut(s) 256
NlaIII CATG 1 cut(s) 317
NlaIV GGNNCC 4 cut(s) 23, 261, 276, 612
NspV TTCGAA 1 cut(s) 153
PagI TCATGA 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PdiI GCCGGC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 217
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 797
Psp5II RGGWCCY 1 cut(s) 21
PspN4I GGNNCC 4 cut(s) 23, 261, 276, 612
PspPI GGNCC 3 cut(s) 21, 275, 463
PspPPI RGGWCCY 1 cut(s) 21
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 3 cut(s) 68, 237, 711
RsaNI GTAC 3 cut(s) 67, 236, 710
SacI GAGCTC 1 cut(s) 797
SalI GTCGAC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 4 cut(s) 73, 115, 383, 458
Sau96I GGNCC 3 cut(s) 21, 275, 463
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 5 cut(s) 26, 71, 272, 273, 790
SduI GDGCHC 1 cut(s) 797
SfcI CTRYAG 2 cut(s) 105, 166
SfuI TTCGAA 1 cut(s) 153
SinI GGWCC 2 cut(s) 21, 463
SmaI CCCGGG 1 cut(s) 273
Sse9I AATT 2 cut(s) 529, 676
SstI GAGCTC 1 cut(s) 797
StyD4I CCNGG 5 cut(s) 24, 69, 270, 271, 788
TaaI ACNGT 3 cut(s) 106, 340, 766
TaiI ACGT 4 cut(s) 36, 332, 352, 504
TaqI TCGA 4 cut(s) 153, 346, 372, 382
TaqII GACCGA 1 cut(s) 706
TasI AATT 2 cut(s) 529, 676
TauI GCSGC 9 cut(s) 42, 45, 256, 286, 310, 640, 754, 757, 760
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 1 cut(s) 195
TspDTI ATGAA 1 cut(s) 662
TspGWI ACGGA 1 cut(s) 502
TspMI CCCGGG 1 cut(s) 271
VpaK11BI GGWCC 2 cut(s) 21, 463
XapI RAATTY 1 cut(s) 529
XmaI CCCGGG 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.