Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8231685.1

Orthogroup ID

OG0006674

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 742

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8231685.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 433 bp

tactttccaggaaaatgggaaggggtttgcagaattctcaggtaccctgcggaactcatcagctaattgccttcagtttggaaggaagaactcggacgattttgccttccatagttcctctgctcagcatatggtaagtaaaccagtagcacctaaaagaattattgcctgctctgctctgcaagaatcttctacttcatctacttccactgttgccgctgaaacaaaagaggtgaaagcagctccagcaaagcctaaagctccggcaaaagctccagtcaagccgctacctcaaatgatggaagaggatattatcccatcgctgaaagcaatactcgaaactcctcaaaatgagctctctgatcttgaactattctttgaagacaacaaggttagtcggcttatcttcattttagcattatgcataacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2996

Protein Analysis

143

Amino Acids

15.49

Weight (kDa)

6.66

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04039 AT2G04039 AT2G04039
fragaria_vesca	FvH4_5g27060 FvH4_5g27060
malus_domestica	MD00G1144800.v1.1 MD15G1141400.v1.1
prunus_persica	Prupe.5G011000_v2.0.a1 Prupe.5G011000_v2.0.a1 Prupe.5G011000_v2.0.a1
pyrus_communis	pycom15g12770
rosa_chinensis	RchiOBHm_Chr7g0218061
rosa_laevigata	RLG00000002419
rosa_multiflora	Rmu_co8231685.1_g000001 Rmu_sc0000379.1_g000002 Rmu_sc0009440.1_g000004
rosa_roxburghii	Rroxscaffold_3G00241450
rosa_rugosa	Rorug07G0173200 Rorug07G0173300
rosa_samantha	Rh7AG315600 Rh7BG305900 Rh7CG333100 Rh7DG313900 Rh7DG314400
rosa_wichuraiana	Rw7G026660 Rw7G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	42
AciI	CCGC	3 cut(s)	50, 217, 285
AcsI	RAATTY	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	369, 381
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	5 cut(s)	63, 243, 261, 273, 356
AluI	AGCT	5 cut(s)	63, 243, 261, 273, 356
Alw21I	GWGCWC	1 cut(s)	358
ApeKI	GCWGC	1 cut(s)	240
ApoI	RAATTY	1 cut(s)	33
Asp718I	GGTACC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	2 cut(s)	293, 326
BciT130I	CCWGG	1 cut(s)	9
BisI	GCNGC	3 cut(s)	217, 241, 285
BlpI	GCTNAGC	1 cut(s)	124
BlsI	GCNGC	3 cut(s)	218, 242, 286
Bme1390I	CCNGG	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	388
BpmI	CTGGAG	2 cut(s)	229, 259
Bpu1102I	GCTNAGC	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	144, 276
BseBI	CCWGG	1 cut(s)	9
BseMII	CTCAG	2 cut(s)	52, 138
BseNI	ACTGG	2 cut(s)	144, 276
BseRI	GAGGAG	1 cut(s)	334
BseXI	GCAGC	1 cut(s)	252
BshNI	GGYRCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	362
Bsp1720I	GCTNAGC	1 cut(s)	124
BspACI	CCGC	3 cut(s)	50, 217, 285
BspCNI	CTCAG	2 cut(s)	51, 137
BspLI	GGNNCC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	144, 276
BssMI	GATC	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	2 cut(s)	38, 124
BstKTI	GATC	1 cut(s)	365
BstMBI	GATC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 246
BstNI	CCWGG	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	252
BstV2I	GAAGAC	1 cut(s)	388
BstXI	CCANNNNNNTGG	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	43
CviJI	RGCY	8 cut(s)	63, 243, 254, 261, 273, 284, 356, 401
CviKI_1	RGCY	8 cut(s)	63, 243, 254, 261, 273, 284, 356, 401
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	2 cut(s)	38, 124
DpnI	GATC	1 cut(s)	364
DpnII	GATC	1 cut(s)	362
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
Ecl136II	GAGCTC	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	7
EcoT22I	ATGCAT	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	358
FaiI	YATR	5 cut(s)	112, 130, 132, 422, 426
FauNDI	CATATG	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	217, 241, 285
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	3 cut(s)	217, 241, 285
GluI	GCNGC	3 cut(s)	217, 241, 285
GsuI	CTGGAG	2 cut(s)	229, 259
HapII	CCGG	1 cut(s)	264
HinfI	GANTC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	2 cut(s)	95, 362
Hpy188III	TCNNGA	1 cut(s)	366
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	4 cut(s)	14, 76, 81, 116
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	3 cut(s)	30, 182, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 246
HpyF3I	CTNAG	2 cut(s)	38, 124
KpnI	GGTACC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	362
LmnI	GCTCC	3 cut(s)	248, 266, 278
LpnPI	CCDG	8 cut(s)	21, 25, 60, 157, 182, 259, 277, 289
Lsp1109I	GCAGC	1 cut(s)	252
MalI	GATC	1 cut(s)	364
MboI	GATC	1 cut(s)	362
MboII	GAAGA	5 cut(s)	98, 181, 315, 393, 398
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	3 cut(s)	33, 65, 160
MnlI	CCTC	5 cut(s)	128, 224, 299, 301, 355
Mph1103I	ATGCAT	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	174, 246
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	1 cut(s)	362
NlaIV	GGNNCC	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	186
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	218, 242, 286
Psp124BI	GAGCTC	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	44
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SacI	GAGCTC	1 cut(s)	358
SatI	GCNGC	3 cut(s)	217, 241, 285
Sau3AI	GATC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	358
Sse9I	AATT	3 cut(s)	33, 65, 160
SsiI	CCGC	3 cut(s)	50, 217, 285
SstI	GAGCTC	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	337
TasI	AATT	3 cut(s)	33, 65, 160
TauI	GCSGC	2 cut(s)	219, 287
TfiI	GAWTC	1 cut(s)	186
TscAI	CASTG	1 cut(s)	215
TseI	GCWGC	1 cut(s)	240
TspDTI	ATGAA	2 cut(s)	187, 398
TspRI	CASTG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.