Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006674

Physical Location & Seq

Genomic Coordinates Reverse (-)

14205730 .. 14206792

Gene Structure 1063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0173200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGAGGCAAATGGAGAAATCTAAGTCATGTGGTACAAGTTCAACCTCAGCCCCGAAACATAAATCGTCTTCATCATCTCAGATCAACACTAGTATTGGTGAATCTACAACACCAATACCTCTCCATGAAGGAACTTCTGCTGCAACTCCGGAAGTTCAACGAACTCAAGGAAGTCAAGCAACCGAGCTTGAAGATGATGGAAGTGTGGAAAGCGTGCTTGAGGCATTGAAACGGAAAGAAAGGTCAGATATTTGGAATCATTTTGGGAGGGATGTGGTGGATGGTAGAGTTAAGGCTAACTGTAATTATTGTGGAAAAATTTACTATGCCGATCCTAGGAAGAATGAGATGCTTAAGATGCCATGTGGAGCTGCAGTGGGGAGTAGTCGGAGCGGAATGTTACCTCCAAAGTCGAAGACTTCATCTATCCGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2996

Protein Analysis

146

Amino Acids

15.77

Weight (kDa)

9.25

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04039 AT2G04039 AT2G04039
fragaria_vesca	FvH4_5g27060 FvH4_5g27060
malus_domestica	MD00G1144800.v1.1 MD15G1141400.v1.1
prunus_persica	Prupe.5G011000_v2.0.a1 Prupe.5G011000_v2.0.a1 Prupe.5G011000_v2.0.a1
pyrus_communis	pycom15g12770
rosa_chinensis	RchiOBHm_Chr7g0218061
rosa_laevigata	RLG00000002419
rosa_multiflora	Rmu_co8231685.1_g000001 Rmu_sc0000379.1_g000002 Rmu_sc0009440.1_g000004
rosa_roxburghii	Rroxscaffold_3G00241450
rosa_rugosa	Rorug07G0173200 Rorug07G0173300
rosa_samantha	Rh7AG315600 Rh7BG305900 Rh7CG333100 Rh7DG313900 Rh7DG314400
rosa_wichuraiana	Rw7G026660 Rw7G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	396
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	321
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	339
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	4 cut(s)	45, 161, 194, 232
AhlI	ACTAGT	1 cut(s)	92
AluBI	AGCT	3 cut(s)	190, 374, 437
AluI	AGCT	3 cut(s)	190, 374, 437
AlwI	GGATC	1 cut(s)	329
Aor13HI	TCCGGA	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	143, 374
ApoI	RAATTY	1 cut(s)	321
AspA2I	CCTAGG	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	113
AvrII	CCTAGG	1 cut(s)	338
BbsI	GAAGAC	2 cut(s)	63, 425
BbvCI	CCTCAGC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	130, 361
BccI	CCATC	2 cut(s)	194, 278
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	2 cut(s)	93, 339
BfmI	CTRYAG	1 cut(s)	375
BfrI	CTTAAG	1 cut(s)	356
BisI	GCNGC	2 cut(s)	144, 375
BlnI	CCTAGG	1 cut(s)	338
BlsI	GCNGC	2 cut(s)	145, 376
BmsI	GCATC	2 cut(s)	342, 351
BpiI	GAAGAC	2 cut(s)	63, 425
Bpu10I	CCTNAGC	1 cut(s)	49
BpuEI	CTTGAG	2 cut(s)	153, 242
BsaJI	CCNNGG	1 cut(s)	338
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
BseAI	TCCGGA	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	2 cut(s)	280, 289
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	63, 95
BseXI	GCAGC	2 cut(s)	130, 361
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	339
Bsp13I	TCCGGA	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	84, 334
BspACI	CCGC	1 cut(s)	396
BspCNI	CTCAG	2 cut(s)	62, 94
BspEI	TCCGGA	1 cut(s)	151
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	356
BsrBI	CCGCTC	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	2 cut(s)	84, 334
BssT1I	CCWWGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	305
BstAFI	CTTAAG	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	3 cut(s)	24, 49, 81
BstF5I	GGATG	2 cut(s)	280, 289
BstKTI	GATC	2 cut(s)	87, 337
BstMBI	GATC	2 cut(s)	84, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	130, 361
BstV2I	GAAGAC	2 cut(s)	63, 425
BtsCI	GGATG	2 cut(s)	280, 289
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	3 cut(s)	30, 128, 366
CviJI	RGCY	5 cut(s)	53, 190, 299, 374, 437
CviKI_1	RGCY	5 cut(s)	53, 190, 299, 374, 437
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	3 cut(s)	24, 49, 81
DpnI	GATC	2 cut(s)	86, 336
DpnII	GATC	2 cut(s)	84, 334
Eco130I	CCWWGG	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	3 cut(s)	33, 131, 369
FaiI	YATR	5 cut(s)	31, 63, 129, 330, 367
FatI	CATG	3 cut(s)	29, 127, 365
Fnu4HI	GCNGC	2 cut(s)	144, 375
FokI	GGATG	2 cut(s)	287, 296
Fsp4HI	GCNGC	2 cut(s)	144, 375
FspBI	CTAG	2 cut(s)	93, 339
GluI	GCNGC	2 cut(s)	144, 375
HapII	CCGG	1 cut(s)	152
Hin1II	CATG	3 cut(s)	33, 131, 369
HinfI	GANTC	2 cut(s)	104, 259
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	1 cut(s)	113
Hpy188I	TCNGA	4 cut(s)	84, 250, 393, 434
Hpy188III	TCNNGA	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	146, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	3 cut(s)	24, 49, 81
Hsp92II	CATG	3 cut(s)	33, 131, 369
Kpn2I	TCCGGA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	84, 334
LmnI	GCTCC	2 cut(s)	371, 393
LpnPI	CCDG	1 cut(s)	165
Lsp1109I	GCAGC	2 cut(s)	130, 361
LweI	GCATC	2 cut(s)	342, 351
MaeI	CTAG	2 cut(s)	93, 339
MaeIII	GTNAC	1 cut(s)	402
MalI	GATC	2 cut(s)	86, 336
MbiI	CCGCTC	1 cut(s)	396
MboI	GATC	2 cut(s)	84, 334
MboII	GAAGA	5 cut(s)	16, 63, 206, 355, 430
MluCI	AATT	2 cut(s)	307, 321
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	5 cut(s)	58, 132, 217, 264, 417
MroI	TCCGGA	1 cut(s)	151
MseI	TTAA	2 cut(s)	294, 357
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	361
NdeII	GATC	2 cut(s)	84, 334
NlaIII	CATG	3 cut(s)	33, 131, 369
PfeI	GAWTC	2 cut(s)	104, 259
PkrI	GCNGC	2 cut(s)	145, 376
PstI	CTGCAG	1 cut(s)	379
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	294, 357
SatI	GCNGC	2 cut(s)	144, 375
Sau3AI	GATC	2 cut(s)	84, 334
SetI	ASST	7 cut(s)	50, 124, 192, 248, 376, 409, 439
SfaNI	GCATC	2 cut(s)	342, 351
SfcI	CTRYAG	1 cut(s)	375
SmlI	CTYRAG	3 cut(s)	168, 221, 356
SmoI	CTYRAG	3 cut(s)	168, 221, 356
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	2 cut(s)	307, 321
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	2 cut(s)	93, 339
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	416
TasI	AATT	2 cut(s)	307, 321
TfiI	GAWTC	2 cut(s)	104, 259
Tru1I	TTAA	2 cut(s)	294, 357
Tru9I	TTAA	2 cut(s)	294, 357
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	2 cut(s)	143, 374
TspDTI	ATGAA	4 cut(s)	17, 63, 144, 414
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	1 cut(s)	384
Vha464I	CTTAAG	1 cut(s)	356
XapI	RAATTY	1 cut(s)	321
XmaJI	CCTAGG	1 cut(s)	338
XspI	CTAG	2 cut(s)	93, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.