Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000379.1

Orthogroup ID

OG0006674

Physical Location & Seq

Genomic Coordinates Reverse (-)

1446 .. 2695

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000379.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggcttcggctaatattctttctatggccaaaccgtctcctcaggaaaatgggaaggggtttgcagaattctcaggtaccctgcggaactcatcagctaattgccttcagtttggaaggaagaactcggacgattttgccttccatagttcctctgctcagcatatggtaagtaaaccagtagcacctaaaagaattattgcctgctctgctctgcaagaatcttctacttcatctacttccactgttgccgctgaaacaaaagaggtgaaagcagctccagcaaagcctaaagctccggcaaaagctccagtcaagccgctacctcaaatgatggaagaggatattatcccatcgctgaaagcaatactcgaaactcctcaaaatgagctctctgatcttgaactattctttgaagacaacaagcttgaaggttcgtttctgaagaagggcaattcgtacacattttgggcgttctttcccaatggagtcctcacaggtccaaaagggttttctttatcttcctgcggcttgggagcaagcactgttgaaccttttcttgttgacgagaagaagatcacggcaagacacattatcttttgggttgaaaagcgtttggcagctcaaggaatcattcctgtgtggaaagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2996

Protein Analysis

217

Amino Acids

23.48

Weight (kDa)

8.71

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04039 AT2G04039 AT2G04039
fragaria_vesca	FvH4_5g27060 FvH4_5g27060
malus_domestica	MD00G1144800.v1.1 MD15G1141400.v1.1
prunus_persica	Prupe.5G011000_v2.0.a1 Prupe.5G011000_v2.0.a1 Prupe.5G011000_v2.0.a1
pyrus_communis	pycom15g12770
rosa_chinensis	RchiOBHm_Chr7g0218061
rosa_laevigata	RLG00000002419
rosa_multiflora	Rmu_co8231685.1_g000001 Rmu_sc0000379.1_g000002 Rmu_sc0009440.1_g000004
rosa_roxburghii	Rroxscaffold_3G00241450
rosa_rugosa	Rorug07G0173200 Rorug07G0173300
rosa_samantha	Rh7AG315600 Rh7BG305900 Rh7CG333100 Rh7DG313900 Rh7DG314400
rosa_wichuraiana	Rw7G026660 Rw7G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	4 cut(s)	85, 252, 320, 528
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	2 cut(s)	92, 464
AfaI	GTAC	2 cut(s)	79, 461
AgsI	TTSAA	5 cut(s)	404, 416, 431, 551, 608
AjuI	GAANNNNNNNTTGG	2 cut(s)	496, 528
AluBI	AGCT	7 cut(s)	98, 278, 296, 308, 391, 427, 623
AluI	AGCT	7 cut(s)	98, 278, 296, 308, 391, 427, 623
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	42
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	275, 620
ApoI	RAATTY	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	555
Asp718I	GGTACC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	2 cut(s)	287, 632
BccI	CCATC	2 cut(s)	328, 361
BceAI	ACGGC	1 cut(s)	597
BcoDI	GTCTC	1 cut(s)	42
BisI	GCNGC	5 cut(s)	252, 276, 320, 529, 621
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	5 cut(s)	253, 277, 321, 530, 622
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	423
BpmI	CTGGAG	2 cut(s)	264, 294
Bpu1102I	GCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	609
Bse1I	ACTGG	2 cut(s)	179, 311
Bse21I	CCTNAGG	1 cut(s)	42
BseMII	CTCAG	3 cut(s)	56, 87, 173
BseNI	ACTGG	2 cut(s)	179, 311
BseRI	GAGGAG	2 cut(s)	30, 369
BseXI	GCAGC	2 cut(s)	287, 632
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	299
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	2 cut(s)	397, 576
Bsp1720I	GCTNAGC	1 cut(s)	159
BspACI	CCGC	4 cut(s)	85, 252, 320, 528
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	3 cut(s)	55, 86, 172
BspLI	GGNNCC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	179, 311
BssMI	GATC	2 cut(s)	397, 576
Bst4CI	ACNGT	3 cut(s)	36, 247, 547
Bst6I	CTCTTC	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	205, 541
BstDEI	CTNAG	3 cut(s)	42, 73, 159
BstKTI	GATC	2 cut(s)	400, 579
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	397, 576
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 281
BstV1I	GCAGC	2 cut(s)	287, 632
BstV2I	GAAGAC	1 cut(s)	423
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	243, 543
Cac8I	GCNNGC	2 cut(s)	205, 541
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	2 cut(s)	78, 460
CviQI	GTAC	2 cut(s)	78, 460
DdeI	CTNAG	3 cut(s)	42, 73, 159
DpnI	GATC	2 cut(s)	399, 578
DpnII	GATC	2 cut(s)	397, 576
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Ecl136II	GAGCTC	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	500
Eco53kI	GAGCTC	1 cut(s)	391
Eco57I	CTGAAG	2 cut(s)	92, 464
Eco81I	CCTNAGG	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	42
FaiI	YATR	4 cut(s)	26, 147, 165, 167
FauNDI	CATATG	1 cut(s)	165
Fnu4HI	GCNGC	5 cut(s)	252, 276, 320, 529, 621
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	5 cut(s)	252, 276, 320, 529, 621
GluI	GCNGC	5 cut(s)	252, 276, 320, 529, 621
GsuI	CTGGAG	2 cut(s)	264, 294
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	3 cut(s)	221, 489, 630
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	3 cut(s)	176, 462, 565
Hpy188I	TCNGA	3 cut(s)	130, 397, 444
Hpy188III	TCNNGA	2 cut(s)	44, 401
Hpy8I	GTNNAC	3 cut(s)	176, 462, 565
HpyAV	CCTTC	6 cut(s)	49, 111, 116, 151, 425, 442
HpyCH4III	ACNGT	3 cut(s)	36, 247, 547
HpyCH4V	TGCA	2 cut(s)	65, 217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 281
HpyF3I	CTNAG	3 cut(s)	42, 73, 159
KpnI	GGTACC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	397, 576
LmnI	GCTCC	4 cut(s)	283, 301, 313, 536
Lsp1109I	GCAGC	2 cut(s)	287, 632
MalI	GATC	2 cut(s)	399, 578
MboI	GATC	2 cut(s)	397, 576
MboII	GAAGA	8 cut(s)	133, 216, 350, 428, 457, 513, 583, 586
MhlI	GDGCHC	1 cut(s)	393
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	4 cut(s)	68, 100, 195, 454
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	498
MnlI	CCTC	7 cut(s)	51, 163, 259, 334, 336, 390, 503
Mox20I	TGGCCA	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	555
MscI	TGGCCA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	638
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	209, 281
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	2 cut(s)	397, 576
NlaIV	GGNNCC	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	221, 630
PkrI	GCNGC	5 cut(s)	253, 277, 321, 530, 622
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	500
RsaI	GTAC	2 cut(s)	79, 461
RsaNI	GTAC	2 cut(s)	78, 460
RseI	CAYNNNNRTG	1 cut(s)	638
SacI	GAGCTC	1 cut(s)	393
SatI	GCNGC	5 cut(s)	252, 276, 320, 529, 621
Sau3AI	GATC	2 cut(s)	397, 576
Sau96I	GGNCC	1 cut(s)	500
SchI	GAGTC	1 cut(s)	498
SduI	GDGCHC	1 cut(s)	393
SinI	GGWCC	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	624
SmoI	CTYRAG	1 cut(s)	624
Sse9I	AATT	4 cut(s)	68, 100, 195, 454
SsiI	CCGC	4 cut(s)	85, 252, 320, 528
SspI	AATATT	1 cut(s)	16
SstI	GAGCTC	1 cut(s)	393
TaaI	ACNGT	3 cut(s)	36, 247, 547
TaqI	TCGA	1 cut(s)	372
TasI	AATT	4 cut(s)	68, 100, 195, 454
TauI	GCSGC	3 cut(s)	254, 322, 531
TfiI	GAWTC	2 cut(s)	221, 630
TscAI	CASTG	2 cut(s)	250, 550
TseI	GCWGC	2 cut(s)	275, 620
TspDTI	ATGAA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	250, 550
VpaK11BI	GGWCC	1 cut(s)	500
XapI	RAATTY	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.