Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

14210311 .. 14213834

Gene Structure 3524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0173300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTTCTTCTTCACCCAACCGATCCGCCGAGGACATCGTCGATACGACGCCGTTGCTCCGAAATTCGGGCGGGTCGTCCGACGAGAGCAACTCGGGCCGCCAATTAGTGCGCCGGCAGAGCCTCCGCCAGGCCGCGCGGTTCCTCCGCCAGGCCAGCAGCCGGAGGCTGATGCGCGAGCCGTCGATGCTGGTGCGCGAGACCGCGGCGGAGCAATTGGAGGAGCGCCAGAGCGATTGGGCCTACTCCAAACCCGTCGTCGTTTTGGACATCATCTGGAACTTCGCTTTCGTCGTCGTGGCGGCGACGGTTCTGGTGCTCAGCCGGTTAGAGTCGCCGGATATGCCGTTGAGGCTTTGGATTGTGGGCTACGCTCTGCAATGCGTGCTGCATATGGTTTGTGTTTGTGTCGAGTTCCGGCGGCGCCAGAACCGGCGGTTTCCCGGGATGAATTCCGGTGACGGAGGGATTGGGAGCGCCGGGAATTCGAGCCCCAGGTCCAGAGACGACTCGTCGCAGTACGTGTCTTTAGCTGATCACTTGAATGAGGAGGGTACCAGTGTTGCTAAGCATCTAGAATCGGCAAATACAATGTTTTCGTTCATCTGGTGGATCATTGGATTCTACTGGGTATCAGCAGGCGGGCAATCTTTGGCACGTGCCTCCCCTCAGCTTTACTGGCTTTGTATAATTTTCCTGGGTTTTGATGTGTTTTTTGTCGTTTTCTGTGTTGCACTGGCTTGTATCATCGGGATCGCTGTTTGTTGCTGTCTTCCATGTATTATTGCACTTTTATACGCCGTGGCAGACCAGCAGGATGGCGCATCTAAGGAAGATATTGAACAATTATCAAAATTCAAATTCCGACGAGTTAGTAATGAGAAAGTTGCAGGCGATGCACAAGGACCTCATGGAGGAGTAATGACTGAATGTGGAACAGATTCACCCATTGAGCATGTTCTTTCACCAGAAGATGCGGAGTGTTGCATCTGCCTCTCTTCTTATGATGACGGTGTGGAGCTGAGGCAACTTCCTTGTGGTCACCATTTTCACTGTTCCTGCATCGATAAGTGGCTTTTCATTAATGCTACTTGTCCTCTCTGCAAGTACAATATTTTGAAGAGTAGCAGCAATGATCAAGGCGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

383

Amino Acids

42.42

Weight (kDa)

5.67

Isoelectric Point (pI)

65.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	326 - 369	1.1e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	327 - 369	4.2e-14	Ring finger domain
zf-RING_11	PF17123	327 - 355	1.4e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	327 - 368	5.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	328 - 368	8.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	554
AccB1I	GGYRCC	2 cut(s)	423, 554
AccII	CGCG	5 cut(s)	137, 139, 177, 198, 206
AclWI	GGATC	3 cut(s)	18, 620, 761
AcsI	RAATTY	5 cut(s)	64, 451, 484, 854, 860
AcvI	CACGTG	1 cut(s)	659
AcyI	GRCGYC	2 cut(s)	50, 424
AfaI	GTAC	3 cut(s)	521, 556, 1109
AfiI	CCNNNNNNNGG	5 cut(s)	67, 130, 151, 162, 914
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	4 cut(s)	544, 842, 859, 1120
AhdI	GACNNNNNGTC	1 cut(s)	511
AjnI	CCWGG	4 cut(s)	129, 150, 494, 696
AluBI	AGCT	3 cut(s)	533, 673, 1021
AluI	AGCT	3 cut(s)	533, 673, 1021
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	2 cut(s)	194, 498
AlwI	GGATC	3 cut(s)	18, 620, 761
Ama87I	CYCGRG	2 cut(s)	94, 443
AoxI	GGCC	4 cut(s)	97, 132, 153, 240
ApeKI	GCWGC	3 cut(s)	159, 388, 1128
ApoI	RAATTY	5 cut(s)	64, 451, 484, 854, 860
ArsI	GACNNNNNNTTYG	2 cut(s)	243, 275
AseI	ATTAAT	1 cut(s)	1083
Asp700I	GAANNNNTTC	1 cut(s)	940
Asp718I	GGTACC	1 cut(s)	554
AspLEI	GCGC	8 cut(s)	114, 139, 177, 198, 228, 426, 479, 824
AspS9I	GGNCC	4 cut(s)	97, 240, 498, 905
AsuC2I	CCSGG	3 cut(s)	444, 445, 481
AsuHPI	GGTGA	5 cut(s)	6, 470, 936, 957, 1034
AvaI	CYCGRG	2 cut(s)	94, 443
AvaII	GGWCC	2 cut(s)	498, 905
BaeI	ACNNNNGTAYC	2 cut(s)	546, 579
BanI	GGYRCC	2 cut(s)	423, 554
BanII	GRGCYC	1 cut(s)	494
BbrPI	CACGTG	1 cut(s)	659
BbsI	GAAGAC	1 cut(s)	764
Bbv12I	GWGCWC	1 cut(s)	321
BbvCI	CCTCAGC	2 cut(s)	669, 1022
BbvI	GCAGC	3 cut(s)	171, 375, 1140
BccI	CCATC	1 cut(s)	812
BceAI	ACGGC	4 cut(s)	37, 166, 331, 785
BcgI	CGANNNNNNTGC	4 cut(s)	37, 71, 175, 209
BciT130I	CCWGG	4 cut(s)	131, 152, 496, 698
BclI	TGATCA	2 cut(s)	535, 1135
BcnI	CCSGG	3 cut(s)	444, 445, 481
BcoDI	GTCTC	2 cut(s)	194, 498
BfaI	CTAG	1 cut(s)	575
BfoI	RGCGCY	3 cut(s)	229, 427, 480
BglI	GCCNNNNNGGC	1 cut(s)	352
BisI	GCNGC	8 cut(s)	100, 135, 160, 207, 303, 389, 422, 1129
BlpI	GCTNAGC	2 cut(s)	320, 567
BlsI	GCNGC	8 cut(s)	101, 136, 161, 208, 304, 390, 423, 1130
Bme1390I	CCNGG	7 cut(s)	131, 152, 444, 445, 481, 496, 698
Bme18I	GGWCC	2 cut(s)	498, 905
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmeT110I	CYCGRG	2 cut(s)	94, 443
BmgT120I	GGNCC	4 cut(s)	97, 240, 498, 905
BmiI	GGNNCC	3 cut(s)	143, 425, 556
BmrFI	CCNGG	7 cut(s)	131, 152, 444, 445, 481, 496, 698
BmrI	ACTGGG	1 cut(s)	637
BmsI	GCATC	8 cut(s)	162, 177, 580, 833, 886, 964, 996, 1071
BmuI	ACTGGG	1 cut(s)	637
BpiI	GAAGAC	1 cut(s)	764
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
Bpu10I	CCTNAGC	2 cut(s)	669, 1022
Bpu1102I	GCTNAGC	2 cut(s)	320, 567
BpuMI	CCSGG	3 cut(s)	444, 445, 481
Bsa29I	ATCGAT	1 cut(s)	1065
BsaAI	YACGTR	2 cut(s)	523, 659
BsaHI	GRCGYC	2 cut(s)	50, 424
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	6 cut(s)	30, 204, 443, 494, 697, 801
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 130, 151, 162, 914
Bse118I	RCCGGY	3 cut(s)	114, 324, 432
Bse1I	ACTGG	4 cut(s)	558, 632, 683, 741
Bse3DI	GCAATG	2 cut(s)	386, 1138
BseBI	CCWGG	4 cut(s)	131, 152, 496, 698
BseCI	ATCGAT	1 cut(s)	1065
BseDI	CCNNGG	6 cut(s)	30, 204, 443, 494, 697, 801
BseGI	GGATG	2 cut(s)	453, 823
BseLI	CCNNNNNNNGG	5 cut(s)	67, 130, 151, 162, 914
BseMI	GCAATG	2 cut(s)	386, 1138
BseMII	CTCAG	3 cut(s)	334, 683, 1013
BseNI	ACTGG	4 cut(s)	558, 632, 683, 741
BseRI	GAGGAG	3 cut(s)	236, 563, 930
BseXI	GCAGC	3 cut(s)	171, 375, 1140
Bsh1236I	CGCG	5 cut(s)	137, 139, 177, 198, 206
BshFI	GGCC	4 cut(s)	99, 134, 155, 242
BshNI	GGYRCC	2 cut(s)	423, 554
BshVI	ATCGAT	1 cut(s)	1065
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	2 cut(s)	94, 443
BsiSI	CCGG	9 cut(s)	115, 163, 325, 338, 418, 433, 444, 456, 480
BslI	CCNNNNNNNGG	5 cut(s)	67, 130, 151, 162, 914
BsmAI	GTCTC	2 cut(s)	194, 498
BsmBI	CGTCTC	1 cut(s)	498
BsnI	GGCC	4 cut(s)	99, 134, 155, 242
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	2 cut(s)	94, 443
Bsp1286I	GDGCHC	2 cut(s)	321, 494
Bsp143I	GATC	5 cut(s)	23, 535, 612, 753, 1135
Bsp1720I	GCTNAGC	2 cut(s)	320, 567
BspANI	GGCC	4 cut(s)	99, 134, 155, 242
BspCNI	CTCAG	3 cut(s)	333, 682, 1014
BspDI	ATCGAT	1 cut(s)	1065
BspFNI	CGCG	5 cut(s)	137, 139, 177, 198, 206
BspLI	GGNNCC	3 cut(s)	143, 425, 556
BspPI	GGATC	3 cut(s)	18, 620, 761
BspT107I	GGYRCC	2 cut(s)	423, 554
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	2 cut(s)	386, 1138
BsrFI	RCCGGY	3 cut(s)	114, 324, 432
BsrI	ACTGG	4 cut(s)	558, 632, 683, 741
BssAI	RCCGGY	3 cut(s)	114, 324, 432
BssECI	CCNNGG	6 cut(s)	30, 204, 443, 494, 697, 801
BssMI	GATC	5 cut(s)	23, 535, 612, 753, 1135
BssNI	GRCGYC	2 cut(s)	50, 424
Bst2UI	CCWGG	4 cut(s)	131, 152, 496, 698
Bst4CI	ACNGT	3 cut(s)	310, 1013, 1055
Bst6I	CTCTTC	2 cut(s)	1003, 1115
BstACI	GRCGYC	2 cut(s)	50, 424
BstAPI	GCANNNNNTGC	2 cut(s)	385, 896
BstBAI	YACGTR	2 cut(s)	523, 659
BstC8I	GCNNGC	7 cut(s)	116, 157, 179, 386, 640, 644, 892
BstDEI	CTNAG	5 cut(s)	320, 567, 669, 828, 1022
BstDSI	CCRYGG	2 cut(s)	204, 801
BstEII	GGTNACC	1 cut(s)	1040
BstENI	CCTNNNNNAGG	3 cut(s)	128, 149, 912
BstF5I	GGATG	2 cut(s)	453, 823
BstFNI	CGCG	5 cut(s)	137, 139, 177, 198, 206
BstH2I	RGCGCY	3 cut(s)	229, 427, 480
BstHHI	GCGC	8 cut(s)	114, 139, 177, 198, 228, 426, 479, 824
BstKTI	GATC	5 cut(s)	26, 538, 615, 756, 1138
BstMAI	GTCTC	2 cut(s)	194, 498
BstMBI	GATC	5 cut(s)	23, 535, 612, 753, 1135
BstMWI	GCNNNNNNNGC	9 cut(s)	96, 120, 156, 187, 343, 352, 385, 679, 896
BstNI	CCWGG	4 cut(s)	131, 152, 496, 698
BstNSI	RCATGY	1 cut(s)	959
BstPI	GGTNACC	1 cut(s)	1040
BstSCI	CCNGG	7 cut(s)	129, 150, 442, 443, 479, 494, 696
BstUI	CGCG	5 cut(s)	137, 139, 177, 198, 206
BstV1I	GCAGC	3 cut(s)	171, 375, 1140
BstV2I	GAAGAC	1 cut(s)	764
BstXI	CCANNNNNNTGG	1 cut(s)	818
Bsu15I	ATCGAT	1 cut(s)	1065
BsuRI	GGCC	4 cut(s)	99, 134, 155, 242
BsuTUI	ATCGAT	1 cut(s)	1065
BtgI	CCRYGG	2 cut(s)	204, 801
BtgZI	GCGATG	1 cut(s)	909
BtsCI	GGATG	2 cut(s)	453, 823
BtsIMutI	CAGTG	3 cut(s)	565, 734, 1051
Cac8I	GCNNGC	7 cut(s)	116, 157, 179, 386, 640, 644, 892
CfoI	GCGC	8 cut(s)	114, 139, 177, 198, 228, 426, 479, 824
Cfr10I	RCCGGY	3 cut(s)	114, 324, 432
Cfr13I	GGNCC	4 cut(s)	97, 240, 498, 905
Cfr42I	CCGCGG	1 cut(s)	207
Cfr9I	CCCGGG	1 cut(s)	443
ClaI	ATCGAT	1 cut(s)	1065
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	3 cut(s)	520, 555, 1108
CviAII	CATG	3 cut(s)	777, 911, 956
CviQI	GTAC	3 cut(s)	520, 555, 1108
DdeI	CTNAG	5 cut(s)	320, 567, 669, 828, 1022
DinI	GGCGCC	1 cut(s)	425
DpnI	GATC	5 cut(s)	25, 537, 614, 755, 1137
DpnII	GATC	5 cut(s)	23, 535, 612, 753, 1135
DriI	GACNNNNNGTC	1 cut(s)	511
Eam1104I	CTCTTC	2 cut(s)	1003, 1115
Eam1105I	GACNNNNNGTC	1 cut(s)	511
EarI	CTCTTC	2 cut(s)	1003, 1115
EciI	GGCGGA	4 cut(s)	16, 116, 137, 224
Eco24I	GRGCYC	1 cut(s)	494
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	498, 905
Eco72I	CACGTG	1 cut(s)	659
Eco88I	CYCGRG	2 cut(s)	94, 443
Eco91I	GGTNACC	1 cut(s)	1040
EcoNI	CCTNNNNNAGG	3 cut(s)	128, 149, 912
EcoO109I	RGGNCCY	1 cut(s)	905
EcoO65I	GGTNACC	1 cut(s)	1040
EcoRI	GAATTC	2 cut(s)	451, 484
EcoRII	CCWGG	4 cut(s)	129, 150, 494, 696
EcoT38I	GRGCYC	1 cut(s)	494
EgeI	GGCGCC	1 cut(s)	425
EheI	GGCGCC	1 cut(s)	425
Esp3I	CGTCTC	1 cut(s)	498
FaeI	CATG	3 cut(s)	780, 914, 959
FaiI	YATR	9 cut(s)	344, 393, 395, 689, 778, 796, 912, 957, 1005
FatI	CATG	3 cut(s)	776, 910, 955
FauI	CCCGC	2 cut(s)	65, 635
FauNDI	CATATG	1 cut(s)	393
FbaI	TGATCA	2 cut(s)	535, 1135
Fnu4HI	GCNGC	8 cut(s)	100, 135, 160, 207, 303, 389, 422, 1129
FokI	GGATG	2 cut(s)	460, 830
FriOI	GRGCYC	1 cut(s)	494
Fsp4HI	GCNGC	8 cut(s)	100, 135, 160, 207, 303, 389, 422, 1129
FspBI	CTAG	1 cut(s)	575
GlaI	GCGC	8 cut(s)	113, 138, 176, 197, 227, 425, 478, 823
GluI	GCNGC	8 cut(s)	100, 135, 160, 207, 303, 389, 422, 1129
HaeII	RGCGCY	3 cut(s)	229, 427, 480
HaeIII	GGCC	4 cut(s)	99, 134, 155, 242
HapII	CCGG	9 cut(s)	115, 163, 325, 338, 418, 433, 444, 456, 480
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	8 cut(s)	114, 139, 177, 198, 228, 426, 479, 824
Hin1I	GRCGYC	2 cut(s)	50, 424
Hin1II	CATG	3 cut(s)	780, 914, 959
Hin6I	GCGC	8 cut(s)	112, 137, 175, 196, 226, 424, 477, 822
HinP1I	GCGC	8 cut(s)	112, 137, 175, 196, 226, 424, 477, 822
HinfI	GANTC	5 cut(s)	332, 509, 578, 621, 941
HpaII	CCGG	9 cut(s)	115, 163, 325, 338, 418, 433, 444, 456, 480
HphI	GGTGA	5 cut(s)	6, 470, 936, 957, 1034
Hpy188I	TCNGA	3 cut(s)	62, 82, 866
Hpy188III	TCNNGA	4 cut(s)	277, 501, 575, 751
HpyCH4III	ACNGT	3 cut(s)	310, 1013, 1055
HpyCH4IV	ACGT	2 cut(s)	522, 658
HpyCH4V	TGCA	9 cut(s)	379, 391, 734, 788, 890, 899, 987, 1062, 1104
HpyF10VI	GCNNNNNNNGC	9 cut(s)	96, 120, 156, 187, 343, 352, 385, 679, 896
HpyF3I	CTNAG	5 cut(s)	320, 567, 669, 828, 1022
HpySE526I	ACGT	2 cut(s)	522, 658
Hsp92I	GRCGYC	2 cut(s)	50, 424
Hsp92II	CATG	3 cut(s)	780, 914, 959
HspAI	GCGC	8 cut(s)	112, 137, 175, 196, 226, 424, 477, 822
KasI	GGCGCC	1 cut(s)	423
KpnI	GGTACC	1 cut(s)	558
KroI	GCCGGC	1 cut(s)	114
KroNI	GCCGGC	1 cut(s)	116
Ksp22I	TGATCA	2 cut(s)	535, 1135
KspI	CCGCGG	1 cut(s)	207
Kzo9I	GATC	5 cut(s)	23, 535, 612, 753, 1135
LmnI	GCTCC	5 cut(s)	63, 211, 223, 474, 1018
Lsp1109I	GCAGC	3 cut(s)	171, 375, 1140
LweI	GCATC	8 cut(s)	162, 177, 580, 833, 886, 964, 996, 1071
MaeI	CTAG	1 cut(s)	575
MaeII	ACGT	2 cut(s)	522, 658
MaeIII	GTNAC	2 cut(s)	458, 1040
MalI	GATC	5 cut(s)	25, 537, 614, 755, 1137
MboI	GATC	5 cut(s)	23, 535, 612, 753, 1135
MboII	GAAGA	6 cut(s)	3, 764, 845, 983, 990, 1132
MfeI	CAATTG	1 cut(s)	215
MhlI	GDGCHC	2 cut(s)	321, 494
MluCI	AATT	9 cut(s)	64, 104, 215, 451, 484, 690, 845, 854, 860
Mly113I	GGCGCC	1 cut(s)	424
MlyI	GAGTC	2 cut(s)	341, 503
MmeI	TCCRAC	2 cut(s)	105, 889
MroNI	GCCGGC	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	940
MseI	TTAA	1 cut(s)	1083
MslI	CAYNNNNRTG	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	9 cut(s)	115, 163, 325, 338, 418, 433, 444, 456, 480
MspR9I	CCNGG	7 cut(s)	131, 152, 444, 445, 481, 496, 698
MunI	CAATTG	1 cut(s)	215
MvaI	CCWGG	4 cut(s)	131, 152, 496, 698
MvnI	CGCG	5 cut(s)	137, 139, 177, 198, 206
MwoI	GCNNNNNNNGC	9 cut(s)	96, 120, 156, 187, 343, 352, 385, 679, 896
NaeI	GCCGGC	1 cut(s)	116
NarI	GGCGCC	1 cut(s)	424
NciI	CCSGG	3 cut(s)	444, 445, 481
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	5 cut(s)	23, 535, 612, 753, 1135
NgoMIV	GCCGGC	1 cut(s)	114
NlaIII	CATG	3 cut(s)	780, 914, 959
NlaIV	GGNNCC	3 cut(s)	143, 425, 556
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	2 cut(s)	458, 1040
NspI	RCATGY	1 cut(s)	959
PcsI	WCGNNNNNNNCGW	2 cut(s)	74, 291
PdiI	GCCGGC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	940
PfeI	GAWTC	3 cut(s)	578, 621, 941
PflFI	GACNNNGTC	1 cut(s)	38
PkrI	GCNGC	8 cut(s)	101, 136, 161, 208, 304, 390, 423, 1130
PleI	GAGTC	2 cut(s)	340, 503
PluTI	GGCGCC	1 cut(s)	427
PmaCI	CACGTG	1 cut(s)	659
PmlI	CACGTG	1 cut(s)	659
PpsI	GAGTC	2 cut(s)	340, 503
Ppu21I	YACGTR	2 cut(s)	523, 659
PpuMI	RGGWCCY	1 cut(s)	905
PshBI	ATTAAT	1 cut(s)	1083
Psp5II	RGGWCCY	1 cut(s)	905
Psp6I	CCWGG	4 cut(s)	129, 150, 494, 696
PspCI	CACGTG	1 cut(s)	659
PspEI	GGTNACC	1 cut(s)	1040
PspGI	CCWGG	4 cut(s)	129, 150, 494, 696
PspN4I	GGNNCC	3 cut(s)	143, 425, 556
PspPI	GGNCC	4 cut(s)	97, 240, 498, 905
PspPPI	RGGWCCY	1 cut(s)	905
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	3 cut(s)	521, 556, 1109
RsaNI	GTAC	3 cut(s)	520, 555, 1108
RseI	CAYNNNNRTG	1 cut(s)	543
SacII	CCGCGG	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	1083
SatI	GCNGC	8 cut(s)	100, 135, 160, 207, 303, 389, 422, 1129
Sau3AI	GATC	5 cut(s)	23, 535, 612, 753, 1135
Sau96I	GGNCC	4 cut(s)	97, 240, 498, 905
SchI	GAGTC	2 cut(s)	341, 503
ScrFI	CCNGG	7 cut(s)	131, 152, 444, 445, 481, 496, 698
SduI	GDGCHC	2 cut(s)	321, 494
SetI	ASST	7 cut(s)	500, 525, 535, 661, 675, 910, 1023
SfaNI	GCATC	8 cut(s)	162, 177, 580, 833, 886, 964, 996, 1071
SfoI	GGCGCC	1 cut(s)	425
Sfr303I	CCGCGG	1 cut(s)	207
SgrBI	CCGCGG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	498, 905
SmaI	CCCGGG	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	543
Sse9I	AATT	9 cut(s)	64, 104, 215, 451, 484, 690, 845, 854, 860
SspDI	GGCGCC	1 cut(s)	423
SspI	AATATT	1 cut(s)	1114
SspMI	CTAG	1 cut(s)	575
StyD4I	CCNGG	7 cut(s)	129, 150, 442, 443, 479, 494, 696
TaaI	ACNGT	3 cut(s)	310, 1013, 1055
TaiI	ACGT	2 cut(s)	525, 661
TaqI	TCGA	5 cut(s)	42, 185, 411, 488, 1065
TasI	AATT	9 cut(s)	64, 104, 215, 451, 484, 690, 845, 854, 860
TatI	WGTACW	1 cut(s)	1107
TauI	GCSGC	5 cut(s)	102, 137, 209, 305, 424
TfiI	GAWTC	3 cut(s)	578, 621, 941
Tru1I	TTAA	1 cut(s)	1083
Tru9I	TTAA	1 cut(s)	1083
TscAI	CASTG	3 cut(s)	565, 741, 1058
TseFI	GTSAC	2 cut(s)	458, 1040
TseI	GCWGC	3 cut(s)	159, 388, 1128
Tsp45I	GTSAC	2 cut(s)	458, 1040
TspDTI	ATGAA	3 cut(s)	464, 592, 1069
TspGWI	ACGGA	1 cut(s)	477
TspMI	CCCGGG	1 cut(s)	443
TspRI	CASTG	3 cut(s)	565, 741, 1058
Tth111I	GACNNNGTC	1 cut(s)	38
VpaK11BI	GGWCC	2 cut(s)	498, 905
VspI	ATTAAT	1 cut(s)	1083
XagI	CCTNNNNNAGG	3 cut(s)	128, 149, 912
XapI	RAATTY	5 cut(s)	64, 451, 484, 854, 860
XbaI	TCTAGA	1 cut(s)	574
XceI	RCATGY	1 cut(s)	959
XmaI	CCCGGG	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	940
XspI	CTAG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.