Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

16051879 .. 16053036

Gene Structure 1158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGACTATGCGATCATTACCTTTTTCCTCTTCTTCTTATTCACTCGCTTCCACAAGTTTGAGTAACAGACTTGAGACTATATTCAAGAAAGCTTCAGAGCTTTGCACTCTCTGTGATATCGAAGCGTGCGTCATCTATTACGGACCAGACGGAGAACTTAAGACATGGCCTAAGGAGAAAGAGAAAGTGAGAGACATTGCTCTGAGGTATAGTCAATTAAACGAAGCCTTGAGAAGCAAGAAAAGCGTTAATCTTCATGGGTTCCTGAACAAGAAGAAGAAGAAGAAGAAGAAGGGTTTGAAGAATCCGAACAATAAGAGGAAGACTTGTCTTAAGAAGAACGTGAATGTTTTAAAGTATCCACTCGCTGATCATTACCCTCCCGACCAAGTTTCTCAACTGACTCAGTCCTTAAAACTCCATGTCTCTAAATTCCAAGAAAGGCTTCGATTTCTTGAGTCGCAGAAACAGACAAAACCGGATCATCAGAGTTTAACACCATCCTCTTTGAATCATCAGACCCAATCTTTGAACCCTAGACAGTTTTCGCTGTTTATGTATAACCATGGAGACAATACTCTGTCTCAGATCTCAGTCTCTGCATCAAATTTCAATCAGAATTATTTCTCAGCGTTACTTGAACAATCTGAGTTGAAGAATCAGTTAATGAAGCAGGATGGTTATGATCAGAATCAGAACATGAGGATGGGTGACATCACCAACAACAATTTTCAACTTCCTTACTTCTCAAAGAAAGAAGCGGTACAAGAATCTGTGAACTACTTTGGGATGAATCAGTTGATGCTGAAGGAGTTATATGGTTGTGATCAAAACATGTGTATGGGTAACATCAATAGCAACAGCTTTCAACATCCTTGCGTCTCAAAGGCACAACATTACTCGGCGGTAGAAGGATCTGTCAATAACCAACGACAATCTGAGTTAATGCAGCAGGAGCTTTGTGGTTATGAGCAGAACATGTGCTTTACCAACAACAATTTTCAAGTCTCAAACAAAGAAGCGGTTCAAGAATCTGTGACTAATTTTGGGTTGATGCAGCATGAACTTTATGGGTGTGATCAAAACATGTCTATGGGCAACATCATTAACAACAGCTTTCAACAGCGTCTCAAACACAGAACAAGAATCTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

385

Amino Acids

44.45

Weight (kDa)

9.18

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	17 - 56	9.8e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	761, 905, 1022
AclWI	GGATC	2 cut(s)	489, 922
AcsI	RAATTY	2 cut(s)	431, 607
AcuI	CTGAAG	2 cut(s)	78, 827
AfaI	GTAC	1 cut(s)	765
AflII	CTTAAG	2 cut(s)	158, 332
AflIII	ACRYGT	3 cut(s)	834, 978, 1086
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	5 cut(s)	92, 100, 864, 958, 1116
AluI	AGCT	5 cut(s)	92, 100, 864, 958, 1116
Alw26I	GTCTC	9 cut(s)	68, 186, 430, 564, 588, 601, 886, 1012, 1133
AlwI	GGATC	2 cut(s)	489, 922
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	949, 1057
ApoI	RAATTY	2 cut(s)	431, 607
ArsI	GACNNNNNNTTYG	4 cut(s)	114, 146, 511, 543
Asp700I	GAANNNNTTC	3 cut(s)	444, 623, 1023
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	709, 722
AvaII	GGWCC	1 cut(s)	143
AxyI	CCTNAGG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	961, 1069
BccI	CCATC	3 cut(s)	508, 671, 700
BciVI	GTATCC	1 cut(s)	369
BclI	TGATCA	4 cut(s)	370, 685, 826, 1078
BcoDI	GTCTC	9 cut(s)	68, 186, 430, 564, 588, 601, 886, 1012, 1133
BfaI	CTAG	1 cut(s)	537
BfrI	CTTAAG	2 cut(s)	158, 332
BfuI	GTATCC	1 cut(s)	369
BglII	AGATCT	1 cut(s)	588
BisI	GCNGC	2 cut(s)	950, 1058
BlsI	GCNGC	2 cut(s)	951, 1059
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	263
BmsI	GCATC	3 cut(s)	611, 792, 1044
BpiI	GAAGAC	1 cut(s)	329
BpuEI	CTTGAG	3 cut(s)	92, 250, 476
BsaBI	GATNNNNATC	1 cut(s)	690
BsaJI	CCNNGG	1 cut(s)	565
BsaWI	WCCGGW	1 cut(s)	478
Bse21I	CCTNAGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	690
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	5 cut(s)	500, 682, 711, 795, 871
BseJI	GATNNNNATC	1 cut(s)	690
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	7 cut(s)	194, 419, 599, 606, 639, 642, 930
BseXI	GCAGC	2 cut(s)	961, 1069
BshFI	GGCC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	479
BsmAI	GTCTC	9 cut(s)	68, 186, 430, 564, 588, 601, 886, 1012, 1133
BsmBI	CGTCTC	2 cut(s)	886, 1133
BsnI	GGCC	1 cut(s)	169
Bsp143I	GATC	8 cut(s)	11, 370, 481, 588, 685, 826, 914, 1078
Bsp19I	CCATGG	1 cut(s)	565
BspACI	CCGC	3 cut(s)	761, 905, 1022
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	7 cut(s)	195, 418, 598, 605, 640, 641, 931
BspLI	GGNNCC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	489, 922
BspTI	CTTAAG	2 cut(s)	158, 332
BsrDI	GCAATG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	8 cut(s)	11, 370, 481, 588, 685, 826, 914, 1078
BssT1I	CCWWGG	1 cut(s)	565
Bst4CI	ACNGT	1 cut(s)	543
Bst6I	CTCTTC	1 cut(s)	34
BstAFI	CTTAAG	2 cut(s)	158, 332
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	8 cut(s)	171, 203, 405, 585, 592, 628, 648, 939
BstDSI	CCRYGG	1 cut(s)	565
BstF5I	GGATG	5 cut(s)	500, 682, 711, 795, 871
BstKTI	GATC	8 cut(s)	14, 373, 484, 591, 688, 829, 917, 1081
BstMAI	GTCTC	9 cut(s)	68, 186, 430, 564, 588, 601, 886, 1012, 1133
BstMBI	GATC	8 cut(s)	11, 370, 481, 588, 685, 826, 914, 1078
BstMWI	GCNNNNNNNGC	2 cut(s)	243, 955
BstNSI	RCATGY	3 cut(s)	838, 982, 1090
BstV1I	GCAGC	2 cut(s)	961, 1069
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	2 cut(s)	588, 914
BstYI	RGATCY	2 cut(s)	588, 914
Bsu36I	CCTNAGG	1 cut(s)	171
BsuI	GTATCC	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	169
BtgI	CCRYGG	1 cut(s)	565
BtsCI	GGATG	5 cut(s)	500, 682, 711, 795, 871
Cac8I	GCNNGC	1 cut(s)	127
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr13I	GGNCC	1 cut(s)	143
CseI	GACGC	3 cut(s)	118, 868, 1115
Csp6I	GTAC	1 cut(s)	764
CviAII	CATG	9 cut(s)	165, 257, 422, 566, 700, 835, 979, 1061, 1087
CviJI	RGCY	8 cut(s)	92, 100, 169, 227, 445, 864, 958, 1116
CviKI_1	RGCY	8 cut(s)	92, 100, 169, 227, 445, 864, 958, 1116
CviQI	GTAC	1 cut(s)	764
DdeI	CTNAG	8 cut(s)	171, 203, 405, 585, 592, 628, 648, 939
DpnI	GATC	8 cut(s)	13, 372, 483, 590, 687, 828, 916, 1080
DpnII	GATC	8 cut(s)	11, 370, 481, 588, 685, 826, 914, 1078
DraI	TTTAAA	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	565
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	78, 827
Eco81I	CCTNAGG	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	565
Esp3I	CGTCTC	2 cut(s)	886, 1133
FaeI	CATG	9 cut(s)	168, 260, 425, 569, 703, 838, 982, 1064, 1090
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FatI	CATG	9 cut(s)	164, 256, 421, 565, 699, 834, 978, 1060, 1086
FbaI	TGATCA	4 cut(s)	370, 685, 826, 1078
Fnu4HI	GCNGC	2 cut(s)	950, 1058
FokI	GGATG	5 cut(s)	487, 689, 718, 802, 858
Fsp4HI	GCNGC	2 cut(s)	950, 1058
FspBI	CTAG	1 cut(s)	537
GluI	GCNGC	2 cut(s)	950, 1058
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	1 cut(s)	479
HgaI	GACGC	3 cut(s)	118, 868, 1115
Hin1II	CATG	9 cut(s)	168, 260, 425, 569, 703, 838, 982, 1064, 1090
HindIII	AAGCTT	1 cut(s)	90
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	2 cut(s)	709, 722
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188III	TCNNGA	5 cut(s)	85, 265, 383, 455, 1028
Hpy8I	GTNNAC	1 cut(s)	778
HpyAV	CCTTC	3 cut(s)	286, 802, 905
HpyCH4III	ACNGT	1 cut(s)	543
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	4 cut(s)	105, 602, 949, 1057
HpyF10VI	GCNNNNNNNGC	2 cut(s)	243, 955
HpyF3I	CTNAG	8 cut(s)	171, 203, 405, 585, 592, 628, 648, 939
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	9 cut(s)	168, 260, 425, 569, 703, 838, 982, 1064, 1090
Ksp22I	TGATCA	4 cut(s)	370, 685, 826, 1078
Kzo9I	GATC	8 cut(s)	11, 370, 481, 588, 685, 826, 914, 1078
LmnI	GCTCC	1 cut(s)	955
LpnPI	CCDG	5 cut(s)	159, 278, 492, 659, 938
Lsp1109I	GCAGC	2 cut(s)	961, 1069
LweI	GCATC	3 cut(s)	611, 792, 1044
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	5 cut(s)	62, 633, 710, 845, 1036
MalI	GATC	8 cut(s)	13, 372, 483, 590, 687, 828, 916, 1080
MboI	GATC	8 cut(s)	11, 370, 481, 588, 685, 826, 914, 1078
MflI	RGATCY	2 cut(s)	588, 914
MluCI	AATT	7 cut(s)	215, 431, 607, 619, 727, 997, 1042
MlyI	GAGTC	2 cut(s)	397, 467
MnlI	CCTC	6 cut(s)	37, 198, 312, 390, 514, 696
MroXI	GAANNNNTTC	3 cut(s)	444, 623, 1023
MslI	CAYNNNNRTG	3 cut(s)	704, 839, 1091
MspCI	CTTAAG	2 cut(s)	158, 332
MspI	CCGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	2 cut(s)	243, 955
NcoI	CCATGG	1 cut(s)	565
NdeII	GATC	8 cut(s)	11, 370, 481, 588, 685, 826, 914, 1078
NlaIII	CATG	9 cut(s)	168, 260, 425, 569, 703, 838, 982, 1064, 1090
NlaIV	GGNNCC	1 cut(s)	263
NmeAIII	GCCGAG	1 cut(s)	881
NmuCI	GTSAC	2 cut(s)	710, 1036
NspI	RCATGY	3 cut(s)	838, 982, 1090
PciI	ACATGT	3 cut(s)	834, 978, 1086
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdmI	GAANNNNTTC	3 cut(s)	444, 623, 1023
PfeI	GAWTC	8 cut(s)	304, 511, 658, 691, 770, 793, 1031, 1146
PflFI	GACNNNGTC	1 cut(s)	406
PkrI	GCNGC	2 cut(s)	951, 1059
PleI	GAGTC	2 cut(s)	397, 466
PpsI	GAGTC	2 cut(s)	397, 466
PscI	ACATGT	3 cut(s)	834, 978, 1086
PspN4I	GGNNCC	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	143
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	588, 914
PsyI	GACNNNGTC	1 cut(s)	406
RsaI	GTAC	1 cut(s)	765
RsaNI	GTAC	1 cut(s)	764
RseI	CAYNNNNRTG	3 cut(s)	704, 839, 1091
SatI	GCNGC	2 cut(s)	950, 1058
Sau3AI	GATC	8 cut(s)	11, 370, 481, 588, 685, 826, 914, 1078
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	2 cut(s)	397, 467
SetI	ASST	8 cut(s)	22, 94, 102, 209, 345, 866, 960, 1118
SfaNI	GCATC	3 cut(s)	611, 792, 1044
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	3 cut(s)	704, 839, 1091
SmlI	CTYRAG	5 cut(s)	71, 158, 229, 332, 455
SmoI	CTYRAG	5 cut(s)	71, 158, 229, 332, 455
Sse9I	AATT	7 cut(s)	215, 431, 607, 619, 727, 997, 1042
SsiI	CCGC	3 cut(s)	761, 905, 1022
SspMI	CTAG	1 cut(s)	537
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	1 cut(s)	543
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	120, 448
TasI	AATT	7 cut(s)	215, 431, 607, 619, 727, 997, 1042
TfiI	GAWTC	8 cut(s)	304, 511, 658, 691, 770, 793, 1031, 1146
TseFI	GTSAC	2 cut(s)	710, 1036
TseI	GCWGC	2 cut(s)	949, 1057
Tsp45I	GTSAC	2 cut(s)	710, 1036
TspDTI	ATGAA	4 cut(s)	245, 683, 806, 1077
TspGWI	ACGGA	2 cut(s)	156, 165
Tth111I	GACNNNGTC	1 cut(s)	406
Vha464I	CTTAAG	2 cut(s)	158, 332
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	2 cut(s)	431, 607
XceI	RCATGY	3 cut(s)	838, 982, 1090
XmnI	GAANNNNTTC	3 cut(s)	444, 623, 1023
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.