Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

22060381 .. 22061667

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG103500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGATCCTCAAAGAAACATACAACAGCTATCGTCTAGTAAGAGTGATCGTAAAAAGGTCCGGGATCGAAAGAAGAATTTAATCAAGAAAGCCGAGGAGCTTTCGAAACTTTGTGGTGTTGATGTATGCTTGATCCTCTACCAACGTCATAGCACTATAGTAGAGACTTGGCCCCAAGATCCTACGGAAGTCAAACGCATTATCACTGGGTACAAGGCAAACCCGGGAATCAGAGATGCAAGCATTCCTTCATCGGAGACAAAGGGTTTGGAAGAAACCAAGGCTGGAAAGTCCCATAGTGGTCGTGAGACTGTAGTTAATTCCGACGAGGAGAGGGAGATGTTGTACCCGACATGGGATGATCGATTAGGTTACTGTTCTGAGGACGAATTGATTAGACTTGTGGCTTCCTTGGATGCAAAGCTAGAAGCTTCAGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

147

Amino Acids

16.63

Weight (kDa)

6.75

Isoelectric Point (pI)

31.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	23 - 50	7.5e-10	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	12, 72, 127, 173
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	2 cut(s)	212, 347
AfiI	CCNNNNNNNGG	1 cut(s)	355
AluBI	AGCT	4 cut(s)	28, 100, 424, 431
AluI	AGCT	4 cut(s)	28, 100, 424, 431
Alw26I	GTCTC	3 cut(s)	158, 251, 302
AlwI	GGATC	4 cut(s)	12, 72, 127, 173
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	76
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AspS9I	GGNCC	2 cut(s)	58, 171
AsuC2I	CCSGG	3 cut(s)	62, 224, 225
AsuII	TTCGAA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	58
BamHI	GGATCC	1 cut(s)	4
BcnI	CCSGG	3 cut(s)	62, 224, 225
BcoDI	GTCTC	3 cut(s)	158, 251, 302
BfaI	CTAG	2 cut(s)	36, 425
BfmI	CTRYAG	2 cut(s)	156, 312
Bme1390I	CCNGG	3 cut(s)	62, 224, 225
Bme18I	GGWCC	1 cut(s)	58
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	58, 171
BmiI	GGNNCC	2 cut(s)	6, 173
BmrFI	CCNGG	3 cut(s)	62, 224, 225
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	226, 406
BmuI	ACTGGG	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	104
BpuMI	CCSGG	3 cut(s)	62, 224, 225
Bsa29I	ATCGAT	1 cut(s)	364
BsaJI	CCNNGG	4 cut(s)	93, 223, 279, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	211
BseCI	ATCGAT	1 cut(s)	364
BseDI	CCNNGG	4 cut(s)	93, 223, 279, 411
BseGI	GGATG	2 cut(s)	364, 421
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	2 cut(s)	110, 344
BshFI	GGCC	1 cut(s)	172
BshVI	ATCGAT	1 cut(s)	364
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	61, 224
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	3 cut(s)	158, 251, 302
BsmFI	GGGAC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	172
BsoBI	CYCGRG	1 cut(s)	223
Bsp119I	TTCGAA	1 cut(s)	104
Bsp143I	GATC	6 cut(s)	4, 46, 64, 132, 178, 361
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	373
BspDI	ATCGAT	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	6, 173
BspPI	GGATC	4 cut(s)	12, 72, 127, 173
BspT104I	TTCGAA	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	4 cut(s)	93, 223, 279, 411
BssMI	GATC	6 cut(s)	4, 46, 64, 132, 178, 361
BssT1I	CCWWGG	2 cut(s)	279, 411
Bst4CI	ACNGT	2 cut(s)	313, 377
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	364, 421
BstKTI	GATC	6 cut(s)	7, 49, 67, 135, 181, 364
BstMAI	GTCTC	3 cut(s)	158, 251, 302
BstMBI	GATC	6 cut(s)	4, 46, 64, 132, 178, 361
BstSCI	CCNGG	3 cut(s)	60, 222, 223
BstSFI	CTRYAG	2 cut(s)	156, 312
BstX2I	RGATCY	2 cut(s)	4, 178
BstYI	RGATCY	2 cut(s)	4, 178
Bsu15I	ATCGAT	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	172
BsuTUI	ATCGAT	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	364, 421
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	58, 171
Cfr9I	CCCGGG	1 cut(s)	223
ClaI	ATCGAT	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	211, 346
CviAII	CATG	1 cut(s)	354
CviJI	RGCY	8 cut(s)	28, 92, 100, 172, 284, 407, 424, 431
CviKI_1	RGCY	8 cut(s)	28, 92, 100, 172, 284, 407, 424, 431
CviQI	GTAC	2 cut(s)	211, 346
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	6 cut(s)	6, 48, 66, 134, 180, 363
DpnII	GATC	6 cut(s)	4, 46, 64, 132, 178, 361
Eco130I	CCWWGG	2 cut(s)	279, 411
Eco47I	GGWCC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	223
EcoT14I	CCWWGG	2 cut(s)	279, 411
ErhI	CCWWGG	2 cut(s)	279, 411
FaeI	CATG	1 cut(s)	357
FaiI	YATR	6 cut(s)	20, 127, 150, 158, 297, 355
FalI	AAGNNNNNCTT	2 cut(s)	232, 264
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	1 cut(s)	353
FokI	GGATG	2 cut(s)	371, 428
FspBI	CTAG	2 cut(s)	36, 425
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	2 cut(s)	61, 224
Hin1II	CATG	1 cut(s)	357
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	1 cut(s)	228
HpaII	CCGG	2 cut(s)	61, 224
Hpy188I	TCNGA	4 cut(s)	233, 256, 325, 382
Hpy188III	TCNNGA	2 cut(s)	85, 305
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	2 cut(s)	313, 377
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	239, 419
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	357
Kzo9I	GATC	6 cut(s)	4, 46, 64, 132, 178, 361
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	4 cut(s)	74, 192, 237, 270
LweI	GCATC	2 cut(s)	226, 406
MaeI	CTAG	2 cut(s)	36, 425
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	6 cut(s)	6, 48, 66, 134, 180, 363
MboI	GATC	6 cut(s)	4, 46, 64, 132, 178, 361
MboII	GAAGA	2 cut(s)	85, 284
MflI	RGATCY	2 cut(s)	4, 178
MluCI	AATT	4 cut(s)	76, 319, 389, 439
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	6 cut(s)	18, 88, 146, 322, 327, 376
MseI	TTAA	2 cut(s)	80, 318
MspI	CCGG	2 cut(s)	61, 224
MspR9I	CCNGG	3 cut(s)	62, 224, 225
Mva1269I	GAATGC	1 cut(s)	243
NciI	CCSGG	3 cut(s)	62, 224, 225
NdeII	GATC	6 cut(s)	4, 46, 64, 132, 178, 361
NlaIII	CATG	1 cut(s)	357
NlaIV	GGNNCC	2 cut(s)	6, 173
NmeAIII	GCCGAG	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	104
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	228
PfoI	TCCNGGA	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	6, 173
PspPI	GGNCC	2 cut(s)	58, 171
PsuI	RGATCY	2 cut(s)	4, 178
RsaI	GTAC	2 cut(s)	212, 347
RsaNI	GTAC	2 cut(s)	211, 346
SaqAI	TTAA	2 cut(s)	80, 318
Sau3AI	GATC	6 cut(s)	4, 46, 64, 132, 178, 361
Sau96I	GGNCC	2 cut(s)	58, 171
ScrFI	CCNGG	3 cut(s)	62, 224, 225
SetI	ASST	7 cut(s)	30, 60, 102, 148, 373, 426, 433
SfaNI	GCATC	2 cut(s)	226, 406
SfcI	CTRYAG	2 cut(s)	156, 312
SfuI	TTCGAA	1 cut(s)	104
SinI	GGWCC	1 cut(s)	58
SmaI	CCCGGG	1 cut(s)	225
Sse9I	AATT	4 cut(s)	76, 319, 389, 439
SspMI	CTAG	2 cut(s)	36, 425
StyD4I	CCNGG	3 cut(s)	60, 222, 223
StyI	CCWWGG	2 cut(s)	279, 411
TaaI	ACNGT	2 cut(s)	313, 377
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	67, 104, 364
TasI	AATT	4 cut(s)	76, 319, 389, 439
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	2 cut(s)	80, 318
Tru9I	TTAA	2 cut(s)	80, 318
TscAI	CASTG	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	1 cut(s)	200
TspMI	CCCGGG	1 cut(s)	223
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	1 cut(s)	76
XmaI	CCCGGG	1 cut(s)	223
XspI	CTAG	2 cut(s)	36, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.