transcription regulatory region sequence-specific DNA binding
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SRF-TF | PF00319 | 2 - 32 | 7.5e-12 | SRF-type transcription factor (DNA-binding and dimerisation domain) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 280 |
| AclWI | GGATC | 3 cut(s) | 123, 211, 340 |
| AcoI | YGGCCR | 1 cut(s) | 107 |
| AfaI | GTAC | 1 cut(s) | 288 |
| AgsI | TTSAA | 1 cut(s) | 42 |
| AluBI | AGCT | 3 cut(s) | 37, 235, 301 |
| AluI | AGCT | 3 cut(s) | 37, 235, 301 |
| Alw26I | GTCTC | 1 cut(s) | 126 |
| AlwI | GGATC | 3 cut(s) | 123, 211, 340 |
| Ama87I | CYCGRG | 2 cut(s) | 32, 317 |
| AoxI | GGCC | 1 cut(s) | 107 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 51, 83 |
| AvaI | CYCGRG | 2 cut(s) | 32, 317 |
| BauI | CACGAG | 1 cut(s) | 161 |
| BcoDI | GTCTC | 1 cut(s) | 126 |
| BmeT110I | CYCGRG | 2 cut(s) | 32, 317 |
| BsaAI | YACGTR | 1 cut(s) | 209 |
| BsaJI | CCNNGG | 1 cut(s) | 123 |
| BseDI | CCNNGG | 1 cut(s) | 123 |
| BshFI | GGCC | 1 cut(s) | 109 |
| BsiHKCI | CYCGRG | 2 cut(s) | 32, 317 |
| BsiSI | CCGG | 1 cut(s) | 110 |
| BsmAI | GTCTC | 1 cut(s) | 126 |
| BsnI | GGCC | 1 cut(s) | 109 |
| BsoBI | CYCGRG | 2 cut(s) | 32, 317 |
| Bsp143I | GATC | 3 cut(s) | 115, 216, 345 |
| BspANI | GGCC | 1 cut(s) | 109 |
| BspPI | GGATC | 3 cut(s) | 123, 211, 340 |
| BssECI | CCNNGG | 1 cut(s) | 123 |
| BssMI | GATC | 3 cut(s) | 115, 216, 345 |
| BssSI | CACGAG | 1 cut(s) | 161 |
| BssT1I | CCWWGG | 1 cut(s) | 123 |
| Bst2BI | CACGAG | 1 cut(s) | 161 |
| Bst4CI | ACNGT | 1 cut(s) | 230 |
| BstBAI | YACGTR | 1 cut(s) | 209 |
| BstDEI | CTNAG | 1 cut(s) | 250 |
| BstKTI | GATC | 3 cut(s) | 118, 219, 348 |
| BstMAI | GTCTC | 1 cut(s) | 126 |
| BstMBI | GATC | 3 cut(s) | 115, 216, 345 |
| BstSNI | TACGTA | 1 cut(s) | 209 |
| BstX2I | RGATCY | 2 cut(s) | 216, 345 |
| BstYI | RGATCY | 2 cut(s) | 216, 345 |
| BsuRI | GGCC | 1 cut(s) | 109 |
| CseI | GACGC | 1 cut(s) | 183 |
| Csp6I | GTAC | 1 cut(s) | 287 |
| CviAII | CATG | 2 cut(s) | 105, 136 |
| CviJI | RGCY | 5 cut(s) | 29, 37, 109, 235, 301 |
| CviKI_1 | RGCY | 5 cut(s) | 29, 37, 109, 235, 301 |
| CviQI | GTAC | 1 cut(s) | 287 |
| DdeI | CTNAG | 1 cut(s) | 250 |
| DpnI | GATC | 3 cut(s) | 117, 218, 347 |
| DpnII | GATC | 3 cut(s) | 115, 216, 345 |
| EaeI | YGGCCR | 1 cut(s) | 107 |
| Eco105I | TACGTA | 1 cut(s) | 209 |
| Eco130I | CCWWGG | 1 cut(s) | 123 |
| Eco32I | GATATC | 1 cut(s) | 55 |
| Eco88I | CYCGRG | 2 cut(s) | 32, 317 |
| EcoRV | GATATC | 1 cut(s) | 55 |
| EcoT14I | CCWWGG | 1 cut(s) | 123 |
| ErhI | CCWWGG | 1 cut(s) | 123 |
| FaeI | CATG | 2 cut(s) | 108, 139 |
| FaiI | YATR | 4 cut(s) | 71, 78, 106, 137 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 285, 317 |
| FatI | CATG | 2 cut(s) | 104, 135 |
| FblI | GTMKAC | 1 cut(s) | 280 |
| HaeIII | GGCC | 1 cut(s) | 109 |
| HapII | CCGG | 1 cut(s) | 110 |
| HgaI | GACGC | 1 cut(s) | 183 |
| Hin1II | CATG | 2 cut(s) | 108, 139 |
| HindIII | AAGCTT | 1 cut(s) | 299 |
| HinfI | GANTC | 1 cut(s) | 263 |
| HpaII | CCGG | 1 cut(s) | 110 |
| Hpy166II | GTNNAC | 1 cut(s) | 281 |
| Hpy188I | TCNGA | 2 cut(s) | 241, 345 |
| Hpy188III | TCNNGA | 3 cut(s) | 83, 100, 131 |
| Hpy8I | GTNNAC | 1 cut(s) | 281 |
| Hpy99I | CGWCG | 1 cut(s) | 177 |
| HpyAV | CCTTC | 1 cut(s) | 253 |
| HpyCH4III | ACNGT | 1 cut(s) | 230 |
| HpyCH4IV | ACGT | 1 cut(s) | 208 |
| HpyF3I | CTNAG | 1 cut(s) | 250 |
| HpySE526I | ACGT | 1 cut(s) | 208 |
| Hsp92II | CATG | 2 cut(s) | 108, 139 |
| Kzo9I | GATC | 3 cut(s) | 115, 216, 345 |
| LpnPI | CCDG | 2 cut(s) | 123, 341 |
| MaeII | ACGT | 1 cut(s) | 208 |
| MaeIII | GTNAC | 2 cut(s) | 83, 306 |
| MalI | GATC | 3 cut(s) | 117, 218, 347 |
| MboI | GATC | 3 cut(s) | 115, 216, 345 |
| MboII | GAAGA | 2 cut(s) | 20, 226 |
| MflI | RGATCY | 2 cut(s) | 216, 345 |
| MnlI | CCTC | 4 cut(s) | 41, 106, 138, 230 |
| MseI | TTAA | 1 cut(s) | 21 |
| MspI | CCGG | 1 cut(s) | 110 |
| NdeII | GATC | 3 cut(s) | 115, 216, 345 |
| NlaIII | CATG | 2 cut(s) | 108, 139 |
| NmuCI | GTSAC | 1 cut(s) | 83 |
| PaeR7I | CTCGAG | 1 cut(s) | 32 |
| PfeI | GAWTC | 1 cut(s) | 263 |
| Ppu21I | YACGTR | 1 cut(s) | 209 |
| PspXI | VCTCGAGB | 1 cut(s) | 32 |
| PsuI | RGATCY | 2 cut(s) | 216, 345 |
| RsaI | GTAC | 1 cut(s) | 288 |
| RsaNI | GTAC | 1 cut(s) | 287 |
| SaqAI | TTAA | 1 cut(s) | 21 |
| Sau3AI | GATC | 3 cut(s) | 115, 216, 345 |
| SetI | ASST | 8 cut(s) | 39, 129, 149, 195, 211, 237, 303, 343 |
| Sfr274I | CTCGAG | 1 cut(s) | 32 |
| SlaI | CTCGAG | 1 cut(s) | 32 |
| SmlI | CTYRAG | 1 cut(s) | 32 |
| SmoI | CTYRAG | 1 cut(s) | 32 |
| SnaBI | TACGTA | 1 cut(s) | 209 |
| StyI | CCWWGG | 1 cut(s) | 123 |
| TaaI | ACNGT | 1 cut(s) | 230 |
| TaiI | ACGT | 1 cut(s) | 211 |
| TaqI | TCGA | 4 cut(s) | 33, 57, 130, 222 |
| TaqII | GACCGA | 1 cut(s) | 347 |
| TfiI | GAWTC | 1 cut(s) | 263 |
| Tru1I | TTAA | 1 cut(s) | 21 |
| Tru9I | TTAA | 1 cut(s) | 21 |
| TseFI | GTSAC | 1 cut(s) | 83 |
| Tsp45I | GTSAC | 1 cut(s) | 83 |
| TspDTI | ATGAA | 2 cut(s) | 255, 272 |
| TspGWI | ACGGA | 1 cut(s) | 102 |
| XhoI | CTCGAG | 1 cut(s) | 32 |
| XmiI | GTMKAC | 1 cut(s) | 280 |