Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

9527741 .. 9528604

Gene Structure 864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGATTCTTCAATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGTTTCAAGAAATCGTCCCTGTCTTCTTCTTCTACTGCAAAAAAGACCACGAATTTGTCTATGAGAGAACAGACCATGTTCAAGAAAGCCTTGGAGCTTTCAACTCTGTGCAACATCGATGTCTGTGTCATATACTATGGTCGTGACGGAAAACTCATCAAGACATGGCCGGAGGATCAATCAAAAGTTCGAGACATGGCTGAGAGGTTTAGCAGATTACACGAGAGAGAGCGATGCAAGAAAAGAACCAACCTTTCTCTGTTTCTACGTAAGAAGATCCTCGACGACACTAAATTGTCGGAGAAAGTCTTAGAGATGGAGGATTCGTTAGAAAGTGGTCTACGAGTACTACAAGATAAGCTTCTGTTACTCCAACCCGAGAAAAACCAGACCGAGTTTGGTCAGACCCGTGCGGTTTCTTCCACAACGAATCCATTGTCTCCTCCTCCTTCGCTAATTGAGGATCATCGTCATCAACAATGGACAGAACCATTGATGAGTGGTGTGTCAAACACAGAGCAAGACCTATCGACGTCATCATTGAGTCAAAATCAGAGCAGAATTTCAGTCTTTCTCTATAACCATGACAACCGTAGCTTCTATCAAGTCCCTGACTCAGTTTCTAGCTTTGACCAATCGGCTTTACTTGGGGAACAAGGATCTGGTCTAGGAAGTAACTTTGATCTTCCTCCCATGGTTTTTCCTCCTCAGATGCAGACACAAACCCCACTTGTCCCCTTTGATCAGTTTGCGGCATGGAATCAAGCACCGTCGTTTGCAGATCCAATGATGTTCCCTTATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

287

Amino Acids

32.68

Weight (kDa)

8.57

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	30 - 71	6.2e-13	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	858
AatII	GACGTC	1 cut(s)	593
AccI	GTMKAC	2 cut(s)	17, 397
AciI	CCGC	2 cut(s)	470, 809
AclWI	GGATC	5 cut(s)	240, 328, 528, 724, 833
AcoI	YGGCCR	1 cut(s)	224
AcsI	RAATTY	2 cut(s)	109, 618
AcyI	GRCGYC	1 cut(s)	590
AfaI	GTAC	1 cut(s)	405
AgsI	TTSAA	4 cut(s)	12, 64, 139, 159
AluBI	AGCT	4 cut(s)	154, 418, 654, 684
AluI	AGCT	4 cut(s)	154, 418, 654, 684
Alw26I	GTCTC	2 cut(s)	243, 501
AlwI	GGATC	5 cut(s)	240, 328, 528, 724, 833
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	1 cut(s)	224
ApoI	RAATTY	2 cut(s)	109, 618
ArsI	GACNNNNNNTTYG	4 cut(s)	94, 126, 479, 511
AvaI	CYCGRG	1 cut(s)	434
BauI	CACGAG	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	72
BccI	CCATC	1 cut(s)	367
BclI	TGATCA	1 cut(s)	799
BcoDI	GTCTC	2 cut(s)	243, 501
BfaI	CTAG	2 cut(s)	681, 725
BisI	GCNGC	1 cut(s)	810
BlsI	GCNGC	1 cut(s)	811
BmcAI	AGTACT	1 cut(s)	405
BmeT110I	CYCGRG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	281, 759
BpiI	GAAGAC	1 cut(s)	72
Bsa29I	ATCGAT	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	326
BsaHI	GRCGYC	1 cut(s)	590
BsaJI	CCNNGG	2 cut(s)	147, 750
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	147, 750
BseMII	CTCAG	3 cut(s)	249, 687, 779
BseRI	GAGGAG	3 cut(s)	489, 492, 753
BshFI	GGCC	1 cut(s)	226
BshVI	ATCGAT	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	3 cut(s)	58, 650, 776
BsmAI	GTCTC	2 cut(s)	243, 501
BsmFI	GGGAC	3 cut(s)	58, 650, 776
BsnI	GGCC	1 cut(s)	226
BsoBI	CYCGRG	1 cut(s)	434
Bsp143I	GATC	7 cut(s)	232, 333, 520, 716, 739, 799, 838
Bsp19I	CCATGG	1 cut(s)	750
BspACI	CCGC	2 cut(s)	470, 809
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	3 cut(s)	250, 686, 778
BspDI	ATCGAT	1 cut(s)	174
BspPI	GGATC	5 cut(s)	240, 328, 528, 724, 833
BssECI	CCNNGG	2 cut(s)	147, 750
BssMI	GATC	7 cut(s)	232, 333, 520, 716, 739, 799, 838
BssNI	GRCGYC	1 cut(s)	590
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	2 cut(s)	147, 750
Bst2BI	CACGAG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	650, 828
BstACI	GRCGYC	1 cut(s)	590
BstBAI	YACGTR	1 cut(s)	326
BstDEI	CTNAG	4 cut(s)	258, 367, 673, 765
BstDSI	CCRYGG	1 cut(s)	750
BstKTI	GATC	7 cut(s)	235, 336, 523, 719, 742, 802, 841
BstMAI	GTCTC	2 cut(s)	243, 501
BstMBI	GATC	7 cut(s)	232, 333, 520, 716, 739, 799, 838
BstSNI	TACGTA	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	3 cut(s)	333, 716, 838
BstYI	RGATCY	3 cut(s)	333, 716, 838
Bsu15I	ATCGAT	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	226
BsuTUI	ATCGAT	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	750
BtgZI	GCGATG	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	6 cut(s)	133, 222, 253, 641, 751, 813
CviJI	RGCY	8 cut(s)	146, 154, 226, 257, 418, 654, 684, 698
CviKI_1	RGCY	8 cut(s)	146, 154, 226, 257, 418, 654, 684, 698
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	4 cut(s)	258, 367, 673, 765
DpnI	GATC	7 cut(s)	234, 335, 522, 718, 741, 801, 840
DpnII	GATC	7 cut(s)	232, 333, 520, 716, 739, 799, 838
EaeI	YGGCCR	1 cut(s)	224
Eco105I	TACGTA	1 cut(s)	326
Eco130I	CCWWGG	2 cut(s)	147, 750
Eco88I	CYCGRG	1 cut(s)	434
EcoT14I	CCWWGG	2 cut(s)	147, 750
ErhI	CCWWGG	2 cut(s)	147, 750
FaeI	CATG	6 cut(s)	136, 225, 256, 644, 754, 816
FalI	AAGNNNNNCTT	4 cut(s)	131, 163, 402, 434
FaqI	GGGAC	3 cut(s)	58, 650, 776
FatI	CATG	6 cut(s)	132, 221, 252, 640, 750, 812
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	2 cut(s)	17, 397
Fnu4HI	GCNGC	1 cut(s)	810
Fsp4HI	GCNGC	1 cut(s)	810
FspBI	CTAG	2 cut(s)	681, 725
GluI	GCNGC	1 cut(s)	810
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	590
Hin1II	CATG	6 cut(s)	136, 225, 256, 644, 754, 816
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	6 cut(s)	5, 380, 487, 601, 671, 817
HpaII	CCGG	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	18, 398
Hpy188I	TCNGA	4 cut(s)	358, 462, 612, 768
Hpy188III	TCNNGA	5 cut(s)	64, 139, 200, 217, 248
Hpy8I	GTNNAC	2 cut(s)	18, 398
Hpy99I	CGWCG	4 cut(s)	22, 344, 592, 832
HpyAV	CCTTC	1 cut(s)	516
HpyCH4III	ACNGT	2 cut(s)	650, 828
HpyCH4IV	ACGT	2 cut(s)	325, 590
HpyCH4V	TGCA	5 cut(s)	95, 168, 294, 772, 836
HpyF3I	CTNAG	4 cut(s)	258, 367, 673, 765
HpySE526I	ACGT	2 cut(s)	325, 590
Hsp92I	GRCGYC	1 cut(s)	590
Hsp92II	CATG	6 cut(s)	136, 225, 256, 644, 754, 816
Ksp22I	TGATCA	1 cut(s)	799
Kzo9I	GATC	7 cut(s)	232, 333, 520, 716, 739, 799, 838
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	89, 240, 458, 681, 705
LweI	GCATC	2 cut(s)	281, 759
MaeI	CTAG	2 cut(s)	681, 725
MaeII	ACGT	2 cut(s)	325, 590
MaeIII	GTNAC	3 cut(s)	200, 423, 731
MalI	GATC	7 cut(s)	234, 335, 522, 718, 741, 801, 840
MboI	GATC	7 cut(s)	232, 333, 520, 716, 739, 799, 838
MboII	GAAGA	8 cut(s)	34, 37, 72, 75, 78, 343, 468, 734
MflI	RGATCY	3 cut(s)	333, 716, 838
MluCI	AATT	6 cut(s)	35, 109, 350, 513, 618, 859
MlyI	GAGTC	2 cut(s)	610, 665
MmeI	TCCRAC	2 cut(s)	336, 454
MspI	CCGG	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	750
NdeII	GATC	7 cut(s)	232, 333, 520, 716, 739, 799, 838
NlaIII	CATG	6 cut(s)	136, 225, 256, 644, 754, 816
NmuCI	GTSAC	1 cut(s)	200
PfeI	GAWTC	4 cut(s)	5, 380, 487, 817
PkrI	GCNGC	1 cut(s)	811
PleI	GAGTC	2 cut(s)	609, 665
PpsI	GAGTC	2 cut(s)	609, 665
Ppu21I	YACGTR	1 cut(s)	326
PsiI	TTATAA	1 cut(s)	858
PsuI	RGATCY	3 cut(s)	333, 716, 838
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SalI	GTCGAC	1 cut(s)	16
SatI	GCNGC	1 cut(s)	810
Sau3AI	GATC	7 cut(s)	232, 333, 520, 716, 739, 799, 838
ScaI	AGTACT	1 cut(s)	405
SchI	GAGTC	2 cut(s)	610, 665
SetI	ASST	9 cut(s)	156, 266, 312, 328, 420, 585, 593, 656, 686
SfaNI	GCATC	2 cut(s)	281, 759
SnaBI	TACGTA	1 cut(s)	326
Sse9I	AATT	6 cut(s)	35, 109, 350, 513, 618, 859
SsiI	CCGC	2 cut(s)	470, 809
SspMI	CTAG	2 cut(s)	681, 725
StyI	CCWWGG	2 cut(s)	147, 750
TaaI	ACNGT	2 cut(s)	650, 828
TaiI	ACGT	2 cut(s)	328, 593
TaqI	TCGA	5 cut(s)	17, 174, 247, 339, 587
TaqII	GACCGA	1 cut(s)	464
TasI	AATT	6 cut(s)	35, 109, 350, 513, 618, 859
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	1 cut(s)	812
TfiI	GAWTC	4 cut(s)	5, 380, 487, 817
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
TspGWI	ACGGA	1 cut(s)	219
XapI	RAATTY	2 cut(s)	109, 618
XcmI	CCANNNNNNNNNTGG	1 cut(s)	452
XmiI	GTMKAC	2 cut(s)	17, 397
XspI	CTAG	2 cut(s)	681, 725
ZraI	GACGTC	1 cut(s)	591
ZrmI	AGTACT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.