Rh5DG124900
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000326
Physical Location & Seq
Forward (+)
11320532 .. 11320919
388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG124900.1

Sequence Viewer

Length: 207 bp
ATGCTAGATGACTTCTCATTAGATCAATTGCTTGCTCTTTTGAAAAAACTAGAGCACAAAATCGAAGACGTGCACAAGCATTATGATAAGCAATGTGTTATTGATGACAATATACTACGACAAACGGCCTTGTTTCCAAACAACAACGTAGACTATTCTCAAATGGTTGCATTGAACCAATACCTTACTAGTGGTTCAATTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

68

Amino Acids

7.93

Weight (kDa)

5.36

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 150
AgsI TTSAA 3 cut(s) 43, 175, 198
AhlI ACTAGT 1 cut(s) 188
AjiI CACGTC 1 cut(s) 70
Alw21I GWGCWC 2 cut(s) 57, 75
Alw44I GTGCAC 1 cut(s) 71
AoxI GGCC 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 57, 75
BceAI ACGGC 1 cut(s) 141
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 3 cut(s) 5, 50, 189
BmgBI CACGTC 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 75
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 2 cut(s) 57, 75
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 57, 75
Bsp143I GATC 1 cut(s) 22
BspANI GGCC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 98
BssMI GATC 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 33
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 72
BsuRI GGCC 1 cut(s) 128
BtrI CACGTC 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 33
CviJI RGCY 1 cut(s) 128
CviKI_1 RGCY 1 cut(s) 128
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
FaiI YATR 2 cut(s) 84, 113
FblI GTMKAC 1 cut(s) 150
FspBI CTAG 3 cut(s) 5, 50, 189
FspEI CC 7 cut(s) 110, 142, 149, 150, 177, 191, 197
HaeIII GGCC 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 73, 151
Hpy8I GTNNAC 2 cut(s) 73, 151
HpyCH4IV ACGT 2 cut(s) 69, 147
HpyCH4V TGCA 2 cut(s) 73, 170
HpySE526I ACGT 2 cut(s) 69, 147
Kzo9I GATC 1 cut(s) 22
MaeI CTAG 3 cut(s) 5, 50, 189
MaeII ACGT 2 cut(s) 69, 147
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 1 cut(s) 77
MfeI CAATTG 1 cut(s) 26
MhlI GDGCHC 2 cut(s) 57, 75
MluCI AATT 2 cut(s) 26, 198
MunI CAATTG 1 cut(s) 26
NdeII GATC 1 cut(s) 22
Sau3AI GATC 1 cut(s) 22
SduI GDGCHC 2 cut(s) 57, 75
SetI ASST 3 cut(s) 72, 150, 186
SgeI CNNG 7 cut(s) 17, 44, 62, 82, 88, 142, 201
SpeI ACTAGT 1 cut(s) 188
Sse9I AATT 2 cut(s) 26, 198
SspMI CTAG 3 cut(s) 5, 50, 189
TaiI ACGT 2 cut(s) 72, 150
TaqI TCGA 2 cut(s) 63, 202
TasI AATT 2 cut(s) 26, 198
VneI GTGCAC 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 3 cut(s) 5, 50, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.