Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

37967045 .. 37967920

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGTGGCTCCTACAAGAAGAAGCTTGGAACTCATACCCAATGACAGTGCTCGAAAGATGGCCTTCCGGAAGCGAAAGAAAAATGTATACAAGAAGGCCGACGAGCTTTCCAAACTTTGCGACATTGATGTAGCCTTGATTGTCTACGAAGCTGATCAAAACAAGGACATCAGGCCAATTCAACCGGAGACGTGGCCACAAGATCCAGTTGAATTCAATCGCATTCTCGACAGGTACAAGGCTTCCAGGGATACTGCTGCCCCTGGTTTTTCCAAGAGAAACTTCGATTTGTCTGACTTTTATGAGGCCAGGAAGAAGAAAGATGAGAAAGATGAGAAAGATGAGAAAGATGACAATAATGGTGACAACGATGATAATGATGATGGTGATGATAGTGATGACGATGATGATGCTCATGTTGATCCCGAACTTCATAAACCGGGCAATAAACAGATTTCTGAAGACAAGTACCCAACATGGGATCCTCGAATAGACCAGTTTTCACAAGATGAATTGACTATACTCATCGCTTCACTCGAAGCCAAGATACAAGCCTCGACACTGAGGATTGAATCCATGGACAGATATACGATATATGCTGAAAAACAAAATCGAAATTTATCCCGGCCTGAGTCAAGCTCAAGCAAAACACCGCATCATTTGAAGCCTGCGAATTTTGATGTGCAGAAGCCTCATGATGTGCATAAGCACCCCTCTCAAAACCCAATAAATACTATGACGACGACTACTACTAGTACTTCAGCCACTCAATCAAAGCCTCCGGCGTCTGTGAAATGTCCAATGCTTCCAAGTGCATGGATTTCAATCTCAGAATCACAGAAGACTCCATTAAGGACGTCATCATCTGGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

292

Amino Acids

33.09

Weight (kDa)

5.48

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	12 - 52	2.6e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	860
AccI	GTMKAC	2 cut(s)	87, 144
AccIII	TCCGGA	1 cut(s)	66
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	4 cut(s)	197, 416, 476, 489
AcoI	YGGCCR	1 cut(s)	194
AcsI	RAATTY	3 cut(s)	212, 616, 673
AcuI	CTGAAG	2 cut(s)	480, 744
AcyI	GRCGYC	2 cut(s)	785, 857
AfaI	GTAC	3 cut(s)	236, 470, 757
AfiI	CCNNNNNNNGG	1 cut(s)	478
AgsI	TTSAA	6 cut(s)	182, 212, 217, 572, 664, 825
AhlI	ACTAGT	1 cut(s)	752
AjiI	CACGTC	1 cut(s)	192
AjnI	CCWGG	3 cut(s)	245, 262, 308
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	24, 106, 152, 639
AluI	AGCT	4 cut(s)	24, 106, 152, 639
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	4 cut(s)	197, 416, 476, 489
Aor13HI	TCCGGA	1 cut(s)	66
AoxI	GGCC	6 cut(s)	60, 96, 173, 194, 306, 626
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	3 cut(s)	212, 616, 673
AsuC2I	CCSGG	2 cut(s)	441, 625
AsuHPI	GGTGA	2 cut(s)	374, 398
BalI	TGGCCA	1 cut(s)	196
BamHI	GGATCC	1 cut(s)	481
BarI	GAAGNNNNNNTAC	2 cut(s)	531, 563
BbsI	GAAGAC	2 cut(s)	468, 848
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	2 cut(s)	52, 377
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	3 cut(s)	247, 264, 310
BciVI	GTATCC	1 cut(s)	244
BclI	TGATCA	1 cut(s)	154
BcnI	CCSGG	2 cut(s)	441, 625
BcoDI	GTCTC	1 cut(s)	182
BcuI	ACTAGT	1 cut(s)	752
BfaI	CTAG	1 cut(s)	753
BfuI	GTATCC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
BmcAI	AGTACT	1 cut(s)	757
Bme1390I	CCNGG	5 cut(s)	247, 264, 310, 441, 625
BmgBI	CACGTC	1 cut(s)	192
BmiI	GGNNCC	2 cut(s)	9, 483
BmrFI	CCNGG	5 cut(s)	247, 264, 310, 441, 625
BmsI	GCATC	2 cut(s)	400, 664
BpiI	GAAGAC	2 cut(s)	468, 848
BplI	GAGNNNNNCTC	2 cut(s)	623, 655
BpuEI	CTTGAG	1 cut(s)	625
BpuMI	CCSGG	2 cut(s)	441, 625
BsaBI	GATNNNNATC	1 cut(s)	824
BsaHI	GRCGYC	2 cut(s)	785, 857
BsaJI	CCNNGG	3 cut(s)	246, 262, 576
BsaWI	WCCGGW	2 cut(s)	66, 184
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse1I	ACTGG	2 cut(s)	206, 496
Bse8I	GATNNNNATC	1 cut(s)	824
BseAI	TCCGGA	1 cut(s)	66
BseBI	CCWGG	3 cut(s)	247, 264, 310
BseDI	CCNNGG	3 cut(s)	246, 262, 576
BseJI	GATNNNNATC	1 cut(s)	824
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMII	CTCAG	3 cut(s)	554, 621, 843
BseNI	ACTGG	2 cut(s)	206, 496
BseXI	GCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	704
BshFI	GGCC	6 cut(s)	62, 98, 175, 196, 308, 628
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	5 cut(s)	67, 185, 440, 625, 782
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	1 cut(s)	182
BsmBI	CGTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	6 cut(s)	62, 98, 175, 196, 308, 628
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp13I	TCCGGA	1 cut(s)	66
Bsp143I	GATC	4 cut(s)	154, 202, 421, 481
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	1 cut(s)	653
BspANI	GGCC	6 cut(s)	62, 98, 175, 196, 308, 628
BspCNI	CTCAG	3 cut(s)	555, 622, 842
BspEI	TCCGGA	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	2 cut(s)	9, 483
BspPI	GGATC	4 cut(s)	197, 416, 476, 489
BsrI	ACTGG	2 cut(s)	206, 496
BssECI	CCNNGG	3 cut(s)	246, 262, 576
BssMI	GATC	4 cut(s)	154, 202, 421, 481
BssNAI	GTATAC	1 cut(s)	88
BssNI	GRCGYC	2 cut(s)	785, 857
BssT1I	CCWWGG	1 cut(s)	576
Bst1107I	GTATAC	1 cut(s)	88
Bst2UI	CCWGG	3 cut(s)	247, 264, 310
Bst4CI	ACNGT	1 cut(s)	47
BstACI	GRCGYC	2 cut(s)	785, 857
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	3 cut(s)	563, 630, 829
BstDSI	CCRYGG	1 cut(s)	576
BstKTI	GATC	4 cut(s)	157, 205, 424, 484
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	4 cut(s)	154, 202, 421, 481
BstNI	CCWGG	3 cut(s)	247, 264, 310
BstSCI	CCNGG	5 cut(s)	245, 262, 308, 439, 623
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	2 cut(s)	468, 848
BstX2I	RGATCY	2 cut(s)	202, 481
BstXI	CCANNNNNNTGG	1 cut(s)	816
BstYI	RGATCY	2 cut(s)	202, 481
BstZ17I	GTATAC	1 cut(s)	88
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	6 cut(s)	62, 98, 175, 196, 308, 628
BtgI	CCRYGG	1 cut(s)	576
BtgZI	GCGATG	1 cut(s)	511
BtrI	CACGTC	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	52, 560
Cac8I	GCNNGC	1 cut(s)	669
CciI	TCATGA	1 cut(s)	694
CseI	GACGC	1 cut(s)	774
Csp6I	GTAC	3 cut(s)	235, 469, 756
CviAII	CATG	5 cut(s)	416, 477, 577, 695, 816
CviQI	GTAC	3 cut(s)	235, 469, 756
DdeI	CTNAG	3 cut(s)	563, 630, 829
DpnI	GATC	4 cut(s)	156, 204, 423, 483
DpnII	GATC	4 cut(s)	154, 202, 421, 481
EaeI	YGGCCR	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	576
Eco57I	CTGAAG	2 cut(s)	480, 744
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	3 cut(s)	245, 262, 308
EcoT14I	CCWWGG	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	576
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	5 cut(s)	419, 480, 580, 698, 819
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 266, 298
FatI	CATG	5 cut(s)	415, 476, 576, 694, 815
FbaI	TGATCA	1 cut(s)	154
FblI	GTMKAC	2 cut(s)	87, 144
Fnu4HI	GCNGC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	753
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	6 cut(s)	62, 98, 175, 196, 308, 628
HapII	CCGG	5 cut(s)	67, 185, 440, 625, 782
HgaI	GACGC	1 cut(s)	774
Hin1I	GRCGYC	2 cut(s)	785, 857
Hin1II	CATG	5 cut(s)	419, 480, 580, 698, 819
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	4 cut(s)	572, 632, 833, 844
HpaII	CCGG	5 cut(s)	67, 185, 440, 625, 782
HphI	GGTGA	2 cut(s)	374, 398
Hpy166II	GTNNAC	2 cut(s)	88, 145
Hpy188I	TCNGA	3 cut(s)	295, 460, 832
Hpy188III	TCNNGA	4 cut(s)	67, 227, 425, 695
Hpy8I	GTNNAC	2 cut(s)	88, 145
Hpy99I	CGWCG	2 cut(s)	104, 745
HpyAV	CCTTC	2 cut(s)	73, 88
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	2 cut(s)	191, 857
HpyCH4V	TGCA	3 cut(s)	685, 703, 815
HpyF3I	CTNAG	3 cut(s)	563, 630, 829
HpySE526I	ACGT	2 cut(s)	191, 857
Hsp92I	GRCGYC	2 cut(s)	785, 857
Hsp92II	CATG	5 cut(s)	419, 480, 580, 698, 819
Kpn2I	TCCGGA	1 cut(s)	66
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	154, 202, 421, 481
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	2 cut(s)	400, 664
MaeI	CTAG	1 cut(s)	753
MaeII	ACGT	2 cut(s)	191, 857
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	4 cut(s)	156, 204, 423, 483
MboI	GATC	4 cut(s)	154, 202, 421, 481
MboII	GAAGA	5 cut(s)	30, 325, 328, 473, 853
MflI	RGATCY	2 cut(s)	202, 481
MhlI	GDGCHC	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	196
MluCI	AATT	5 cut(s)	177, 212, 512, 616, 673
MluNI	TGGCCA	1 cut(s)	196
MlyI	GAGTC	2 cut(s)	641, 838
MnlI	CCTC	7 cut(s)	298, 495, 558, 565, 702, 724, 789
Mox20I	TGGCCA	1 cut(s)	196
MroI	TCCGGA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	196
MseI	TTAA	1 cut(s)	851
Msp20I	TGGCCA	1 cut(s)	196
MspI	CCGG	5 cut(s)	67, 185, 440, 625, 782
MspR9I	CCNGG	5 cut(s)	247, 264, 310, 441, 625
Mva1269I	GAATGC	1 cut(s)	222
MvaI	CCWGG	3 cut(s)	247, 264, 310
NciI	CCSGG	2 cut(s)	441, 625
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	4 cut(s)	154, 202, 421, 481
NlaIII	CATG	5 cut(s)	419, 480, 580, 698, 819
NlaIV	GGNNCC	2 cut(s)	9, 483
NmuCI	GTSAC	1 cut(s)	362
PagI	TCATGA	1 cut(s)	694
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PctI	GAATGC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	572, 833
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	2 cut(s)	640, 838
PpsI	GAGTC	2 cut(s)	640, 838
Psp6I	CCWGG	3 cut(s)	245, 262, 308
PspGI	CCWGG	3 cut(s)	245, 262, 308
PspN4I	GGNNCC	2 cut(s)	9, 483
PsuI	RGATCY	2 cut(s)	202, 481
RsaI	GTAC	3 cut(s)	236, 470, 757
RsaNI	GTAC	3 cut(s)	235, 469, 756
SaqAI	TTAA	1 cut(s)	851
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	4 cut(s)	154, 202, 421, 481
ScaI	AGTACT	1 cut(s)	757
SchI	GAGTC	2 cut(s)	641, 838
ScrFI	CCNGG	5 cut(s)	247, 264, 310, 441, 625
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	7 cut(s)	26, 108, 154, 194, 236, 641, 860
SfaNI	GCATC	2 cut(s)	400, 664
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
SpeI	ACTAGT	1 cut(s)	752
Sse9I	AATT	5 cut(s)	177, 212, 512, 616, 673
SsiI	CCGC	1 cut(s)	653
SspMI	CTAG	1 cut(s)	753
StyD4I	CCNGG	5 cut(s)	245, 262, 308, 439, 623
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	2 cut(s)	194, 860
TaqI	TCGA	7 cut(s)	52, 228, 285, 487, 537, 557, 613
TasI	AATT	5 cut(s)	177, 212, 512, 616, 673
TatI	WGTACW	1 cut(s)	755
TfiI	GAWTC	2 cut(s)	572, 833
Tru1I	TTAA	1 cut(s)	851
Tru9I	TTAA	1 cut(s)	851
TscAI	CASTG	2 cut(s)	52, 567
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	2 cut(s)	422, 525
TspRI	CASTG	2 cut(s)	52, 567
XapI	RAATTY	3 cut(s)	212, 616, 673
XmiI	GTMKAC	2 cut(s)	87, 144
XspI	CTAG	1 cut(s)	753
ZraI	GACGTC	1 cut(s)	858
ZrmI	AGTACT	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.