RLG00000029928

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000326
Physical Location & Seq
Reverse (-)
51517540 .. 51518253
714 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029928

Sequence Viewer

Length: 597 bp
ATGGAGAACCGATTAAATACTACACGATTGTGCATTAGCTCTCAGAAGAGCTCATACGAAAAATGCAGTTTTAAACTGAGGCTAGGAGGCAATTGTTCTTTGGTTTTTGGTAAAATTGAATTTGATTTTCTGGTCCCATCTATGGAACTCTTGCCCAGTTCTCAAAGAAAGCTTCTTGGGGATCGGGAGAGAAATTTATGTAACAAGGCGGATGAACTTTCAATAGCAAAGCTGGGGATGAAGGACAATGACGTTGAAGGTATGAGTAGTCCTTCATCCCTGGGGGCAATCAGAGATGCCGCAGATGCTACTACTGCCCATTCTACTTCTAGTCATGAACCAGATATGAAGATTAAATTGGGTTTAAATATTTTTGATTCTTATGATTCCGAGATTAAAGGTAAGAAGTTGCATGTTGATCGCAATACTATAAATTCCGAAGACACCATGAAGATGGTGTTGCAGCACCTAACAAGGAGTGCAAGGCTTCCCGCGGATGAATTGATTGGAGATGATGAGGCAAAGCTTGCCTCACTGGAAGCTAAGCTGCAAGCTATAACCAAGAGAATTGCTTTAAGGGAAGCAACTAATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.92

Weight (kDa)

6.91

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 494
AciI CCGC 4 cut(s) 209, 300, 492, 494
AclWI GGATC 1 cut(s) 189
AcsI RAATTY 3 cut(s) 119, 193, 433
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 3 cut(s) 119, 222, 257
AjnI CCWGG 1 cut(s) 279
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AleI CACNNNNGTG 1 cut(s) 28
AluBI AGCT 8 cut(s) 39, 51, 172, 232, 526, 542, 547, 554
AluI AGCT 8 cut(s) 39, 51, 172, 232, 526, 542, 547, 554
Alw21I GWGCWC 1 cut(s) 53
AlwI GGATC 1 cut(s) 189
ApeKI GCWGC 2 cut(s) 463, 547
ApoI RAATTY 3 cut(s) 119, 193, 433
AspS9I GGNCC 1 cut(s) 133
AvaII GGWCC 1 cut(s) 133
BanII GRGCYC 1 cut(s) 53
BarI GAAGNNNNNNTAC 2 cut(s) 38, 70
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 475, 534
BccI CCATC 2 cut(s) 145, 448
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 1 cut(s) 281
BfaI CTAG 2 cut(s) 83, 330
BisI GCNGC 3 cut(s) 300, 464, 548
BlpI GCTNAGC 1 cut(s) 543
BlsI GCNGC 3 cut(s) 301, 465, 549
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 281
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 2 cut(s) 286, 295
BmuI ACTGGG 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 447
Bpu1102I GCTNAGC 1 cut(s) 543
BsaJI CCNNGG 3 cut(s) 279, 280, 492
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 2 cut(s) 156, 540
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 3 cut(s) 279, 280, 492
BseGI GGATG 4 cut(s) 217, 243, 275, 502
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 56, 68
BseNI ACTGG 2 cut(s) 156, 540
BseXI GCAGC 2 cut(s) 475, 534
BseYI CCCAGC 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 53
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 181, 418
Bsp1720I GCTNAGC 1 cut(s) 543
BspACI CCGC 4 cut(s) 209, 300, 492, 494
BspCNI CTCAG 2 cut(s) 55, 69
BspFNI CGCG 1 cut(s) 494
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 1 cut(s) 189
BspQI GCTCTTC 1 cut(s) 41
BsrI ACTGG 2 cut(s) 156, 540
BssECI CCNNGG 3 cut(s) 279, 280, 492
BssMI GATC 2 cut(s) 181, 418
Bst2UI CCWGG 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 527
BstC8I GCNNGC 2 cut(s) 528, 552
BstDEI CTNAG 3 cut(s) 42, 77, 543
BstDSI CCRYGG 1 cut(s) 492
BstF5I GGATG 4 cut(s) 217, 243, 275, 502
BstFNI CGCG 1 cut(s) 494
BstKTI GATC 2 cut(s) 184, 421
BstMBI GATC 2 cut(s) 181, 418
BstMWI GCNNNNNNNGC 3 cut(s) 305, 314, 527
BstNI CCWGG 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 279
BstUI CGCG 1 cut(s) 494
BstV1I GCAGC 2 cut(s) 475, 534
BstV2I GAAGAC 1 cut(s) 447
BstXI CCANNNNNNTGG 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 492
BtsCI GGATG 4 cut(s) 217, 243, 275, 502
BtsIMutI CAGTG 1 cut(s) 533
Cac8I GCNNGC 2 cut(s) 528, 552
CciI TCATGA 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 133
Cfr42I CCGCGG 1 cut(s) 495
CviAII CATG 3 cut(s) 335, 413, 448
DdeI CTNAG 3 cut(s) 42, 77, 543
DpnI GATC 2 cut(s) 183, 420
DpnII GATC 2 cut(s) 181, 418
DraI TTTAAA 2 cut(s) 73, 366
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 224
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 53
FaeI CATG 3 cut(s) 338, 416, 451
FaqI GGGAC 1 cut(s) 119
FatI CATG 3 cut(s) 334, 412, 447
FauI CCCGC 1 cut(s) 499
Fnu4HI GCNGC 3 cut(s) 300, 464, 548
FokI GGATG 4 cut(s) 224, 250, 262, 509
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 300, 464, 548
FspBI CTAG 2 cut(s) 83, 330
GluI GCNGC 3 cut(s) 300, 464, 548
GsaI CCCAGC 1 cut(s) 236
Hin1II CATG 3 cut(s) 338, 416, 451
HindIII AAGCTT 2 cut(s) 170, 524
HinfI GANTC 2 cut(s) 377, 386
Hpy188I TCNGA 4 cut(s) 45, 293, 391, 439
Hpy188III TCNNGA 2 cut(s) 185, 335
HpyAV CCTTC 3 cut(s) 235, 251, 282
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 6 cut(s) 33, 66, 412, 463, 482, 550
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 314, 527
HpyF3I CTNAG 3 cut(s) 42, 77, 543
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 3 cut(s) 338, 416, 451
KspI CCGCGG 1 cut(s) 495
Kzo9I GATC 2 cut(s) 181, 418
LguI GCTCTTC 1 cut(s) 41
LpnPI CCDG 7 cut(s) 116, 169, 218, 266, 293, 354, 521
Lsp1109I GCAGC 2 cut(s) 475, 534
LweI GCATC 2 cut(s) 286, 295
MaeI CTAG 2 cut(s) 83, 330
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 183, 420
MboI GATC 2 cut(s) 181, 418
MboII GAAGA 4 cut(s) 58, 361, 452, 463
MfeI CAATTG 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 8 cut(s) 91, 114, 119, 193, 356, 433, 500, 567
MnlI CCTC 4 cut(s) 72, 80, 511, 541
MseI TTAA 6 cut(s) 14, 72, 354, 365, 396, 575
MslI CAYNNNNRTG 2 cut(s) 28, 452
MspA1I CMGCKG 1 cut(s) 494
MspR9I CCNGG 1 cut(s) 281
MunI CAATTG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 3 cut(s) 305, 314, 527
NdeII GATC 2 cut(s) 181, 418
NlaIII CATG 3 cut(s) 338, 416, 451
NlaIV GGNNCC 1 cut(s) 135
NspI RCATGY 1 cut(s) 416
OliI CACNNNNGTG 1 cut(s) 28
PagI TCATGA 1 cut(s) 334
PasI CCCWGGG 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 41
PfeI GAWTC 2 cut(s) 377, 386
PkrI GCNGC 3 cut(s) 301, 465, 549
Psp124BI GAGCTC 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 133
RseI CAYNNNNRTG 2 cut(s) 28, 452
SacI GAGCTC 1 cut(s) 53
SacII CCGCGG 1 cut(s) 495
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 6 cut(s) 14, 72, 354, 365, 396, 575
SatI GCNGC 3 cut(s) 300, 464, 548
Sau3AI GATC 2 cut(s) 181, 418
Sau96I GGNCC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 1 cut(s) 53
SfaNI GCATC 2 cut(s) 286, 295
Sfr303I CCGCGG 1 cut(s) 495
SgrBI CCGCGG 1 cut(s) 495
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 2 cut(s) 28, 452
Sse9I AATT 8 cut(s) 91, 114, 119, 193, 356, 433, 500, 567
SsiI CCGC 4 cut(s) 209, 300, 492, 494
SspI AATATT 1 cut(s) 370
SspMI CTAG 2 cut(s) 83, 330
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 279
TaiI ACGT 1 cut(s) 255
TasI AATT 8 cut(s) 91, 114, 119, 193, 356, 433, 500, 567
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 2 cut(s) 377, 386
Tru1I TTAA 6 cut(s) 14, 72, 354, 365, 396, 575
Tru9I TTAA 6 cut(s) 14, 72, 354, 365, 396, 575
TscAI CASTG 1 cut(s) 540
TseI GCWGC 2 cut(s) 463, 547
TspDTI ATGAA 7 cut(s) 228, 254, 264, 351, 362, 464, 513
TspRI CASTG 1 cut(s) 540
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 3 cut(s) 119, 193, 433
XceI RCATGY 1 cut(s) 416
XspI CTAG 2 cut(s) 83, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.