Rh1BG072700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000326
Physical Location & Seq
Reverse (-)
11243685 .. 11244134
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG072700.1

Sequence Viewer

Length: 450 bp
ATGAGTAGTCCTTCATCCCTGGGGGCAATCAGAGACACCGCAGATGCTACTACTGCCCATTCTACTTCTAGTCATGAACCAAATAAGAAGATTAAATTAGATTTAAATCTTACTGATTCTTATGATTCCGGGATTAAAGGTAAAAAGTTGCATGCTGATTACAATACTATAAATTCCGAAGACGCCATGAAGATGGAGCTGCAGTACCTAACAAGGAGTGCAAAGCTTCCCGAGGACGAATTGATTAGAGATGATGAGGAAAATCTTGCTTCACTGGAAGCTAAGCTGCAAGCTATAACCAAGAGAATTGCTTTACGGGGTAACATAGGCAATGCTAGATTATATGTATATAGAGCTTTTCTTTTATGCATCTTTTTTTTTCCAAGTGTTGGTGCCGGTGTAGAGAAAGAACACGATAGGGTTAGTATGAAGCTTGTAAACAACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.58

Weight (kDa)

6.42

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 392
AccB7I CCANNNNNTGG 1 cut(s) 389
AciI CCGC 1 cut(s) 39
AcsI RAATTY 1 cut(s) 172
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 389
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 7 cut(s) 199, 226, 281, 286, 293, 356, 433
AluI AGCT 7 cut(s) 199, 226, 281, 286, 293, 356, 433
Alw26I GTCTC 1 cut(s) 27
Ama87I CYCGRG 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 199, 286
ApoI RAATTY 1 cut(s) 172
AsuC2I CCSGG 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 230
BanI GGYRCC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 186, 273
BccI CCATC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 20
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 2 cut(s) 69, 336
BfmI CTRYAG 1 cut(s) 200
BisI GCNGC 2 cut(s) 200, 287
BlpI GCTNAGC 1 cut(s) 282
BlsI GCNGC 2 cut(s) 201, 288
Bme1390I CCNGG 2 cut(s) 20, 130
BmeT110I CYCGRG 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 2 cut(s) 20, 130
BmsI GCATC 2 cut(s) 34, 378
BpiI GAAGAC 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 282
BpuMI CCSGG 1 cut(s) 130
BsaBI GATNNNNATC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 18, 19, 231
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 105
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 18, 19, 231
BseGI GGATG 1 cut(s) 14
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMI GCAATG 1 cut(s) 337
BseNI ACTGG 1 cut(s) 279
BseXI GCAGC 2 cut(s) 186, 273
BshNI GGYRCC 1 cut(s) 392
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 2 cut(s) 129, 396
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 1 cut(s) 27
BsoBI CYCGRG 1 cut(s) 230
Bsp1720I GCTNAGC 1 cut(s) 282
BspACI CCGC 1 cut(s) 39
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 394
BspMAI CTGCAG 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 395
BsrI ACTGG 1 cut(s) 279
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 3 cut(s) 18, 19, 231
BssNI GRCGYC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 20
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 153, 291
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 14
BstMAI GTCTC 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 18, 128
BstSFI CTRYAG 1 cut(s) 200
BstV1I GCAGC 2 cut(s) 186, 273
BstV2I GAAGAC 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 2 cut(s) 153, 291
CciI TCATGA 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 395
CseI GACGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 205
CviAII CATG 3 cut(s) 74, 152, 187
CviJI RGCY 7 cut(s) 199, 226, 281, 286, 293, 356, 433
CviKI_1 RGCY 7 cut(s) 199, 226, 281, 286, 293, 356, 433
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 282
DraI TTTAAA 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 371
FaeI CATG 3 cut(s) 77, 155, 190
FatI CATG 3 cut(s) 73, 151, 186
Fnu4HI GCNGC 2 cut(s) 200, 287
Fsp4HI GCNGC 2 cut(s) 200, 287
FspBI CTAG 2 cut(s) 69, 336
GluI GCNGC 2 cut(s) 200, 287
HapII CCGG 2 cut(s) 129, 396
HgaI GACGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 3 cut(s) 77, 155, 190
HindIII AAGCTT 2 cut(s) 224, 431
HinfI GANTC 2 cut(s) 116, 125
HpaII CCGG 2 cut(s) 129, 396
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 2 cut(s) 32, 178
Hpy188III TCNNGA 2 cut(s) 74, 230
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 1 cut(s) 21
HpyCH4V TGCA 5 cut(s) 151, 202, 221, 289, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 282
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 3 cut(s) 77, 155, 190
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 5 cut(s) 5, 32, 142, 260, 409
Lsp1109I GCAGC 2 cut(s) 186, 273
LweI GCATC 2 cut(s) 34, 378
MaeI CTAG 2 cut(s) 69, 336
MaeIII GTNAC 1 cut(s) 320
MboII GAAGA 3 cut(s) 100, 191, 202
MluCI AATT 4 cut(s) 95, 172, 239, 306
MnlI CCTC 2 cut(s) 226, 250
Mph1103I ATGCAT 1 cut(s) 371
MseI TTAA 3 cut(s) 93, 104, 135
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 2 cut(s) 129, 396
MspR9I CCNGG 2 cut(s) 20, 130
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 53
NciI CCSGG 1 cut(s) 130
NlaIII CATG 3 cut(s) 77, 155, 190
NlaIV GGNNCC 1 cut(s) 394
NsiI ATGCAT 1 cut(s) 371
NspI RCATGY 1 cut(s) 155
PaeI GCATGC 1 cut(s) 155
PagI TCATGA 1 cut(s) 73
PasI CCCWGGG 1 cut(s) 19
PfeI GAWTC 2 cut(s) 116, 125
PflMI CCANNNNNTGG 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 2 cut(s) 201, 288
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 394
PstI CTGCAG 1 cut(s) 204
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 3 cut(s) 93, 104, 135
SatI GCNGC 2 cut(s) 200, 287
ScrFI CCNGG 2 cut(s) 20, 130
SetI ASST 9 cut(s) 142, 201, 210, 228, 283, 288, 295, 358, 435
SfaNI GCATC 2 cut(s) 34, 378
SfcI CTRYAG 1 cut(s) 200
SmiI ATTTAAAT 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 191
SphI GCATGC 1 cut(s) 155
Sse9I AATT 4 cut(s) 95, 172, 239, 306
SsiI CCGC 1 cut(s) 39
SspMI CTAG 2 cut(s) 69, 336
StyD4I CCNGG 2 cut(s) 18, 128
SwaI ATTTAAAT 1 cut(s) 105
TasI AATT 4 cut(s) 95, 172, 239, 306
TfiI GAWTC 2 cut(s) 116, 125
Tru1I TTAA 3 cut(s) 93, 104, 135
Tru9I TTAA 3 cut(s) 93, 104, 135
TscAI CASTG 1 cut(s) 279
TseI GCWGC 2 cut(s) 199, 286
TspDTI ATGAA 3 cut(s) 90, 203, 443
TspRI CASTG 1 cut(s) 279
Van91I CCANNNNNTGG 1 cut(s) 389
XapI RAATTY 1 cut(s) 172
XceI RCATGY 1 cut(s) 155
XspI CTAG 2 cut(s) 69, 336
Zsp2I ATGCAT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.