Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

9975918 .. 9976592

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27944.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTATTCTTCAATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGCTTCAAGAAATCGTCTCTGTCTTCTTCTTCCACTGCAAAAAAGACCACGAATTTGTCTATGAGAGAACAGACCATGTTTAAGAAAGCCTTGGAGCTTTCGACTCTCTGCGACATCGAAGTCTGTGTCATACTTTATGGTCGTGACGGAGAACTCATCAAGACATGGCCGGAAGATCAATCAAAAGTTCGAGACATGGCTGAGAGGTTTAGCAGATTACACGAGAGAGAGCGATGCAAGAAAAGGACAAACCTTTCTCTGTTTCTACGTAAGAAGATCCTCGACGACAATAAATTGTCTGAGAAAGTCTTAGAGATGGAGGATTCGTTAGAAAGTGGTCTACGGGTACTGCAAAATAAGCTTCTGTTACTCCAACCCGAGAAAAACCAGACCAAGTTAGGTCAGAGCCGTGCGGTTTCTTCCACAACGAATCTATTGTCTTCTCCTGAGAATCACCATAATCAACAATGGACAGAACCATTGGAGAATGGTGTGTCAAACACAGAGCAAGAGCTATCGACTTCATCATTGAGTCAACATCAGAGCAAATATTCTGTCTTTCTTTATAACCATGACAACGGAAGCTTCTATCAAGTCCCTGACTCGATCTGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

224

Amino Acids

25.78

Weight (kDa)

9.12

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	30 - 71	7.9e-13	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
AasI	GACNNNNNNGTC	1 cut(s)	176
AccI	GTMKAC	2 cut(s)	17, 397
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	109
AfaI	GTAC	1 cut(s)	405
AgsI	TTSAA	2 cut(s)	12, 64
AluBI	AGCT	4 cut(s)	154, 418, 571, 642
AluI	AGCT	4 cut(s)	154, 418, 571, 642
Alw26I	GTCTC	2 cut(s)	78, 243
AlwI	GGATC	1 cut(s)	328
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	8 cut(s)	94, 126, 168, 200, 479, 511, 597, 629
AsuHPI	GGTGA	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	434
BauI	CACGAG	1 cut(s)	278
BbsI	GAAGAC	2 cut(s)	72, 489
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	1 cut(s)	450
BcoDI	GTCTC	2 cut(s)	78, 243
BfaI	CTAG	1 cut(s)	673
BmeT110I	CYCGRG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	281
BpiI	GAAGAC	2 cut(s)	72, 489
BsaAI	YACGTR	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
BseDI	CCNNGG	1 cut(s)	147
BseMII	CTCAG	3 cut(s)	249, 348, 495
BshFI	GGCC	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	638
BsmAI	GTCTC	2 cut(s)	78, 243
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	1 cut(s)	226
BsoBI	CYCGRG	1 cut(s)	434
Bsp143I	GATC	3 cut(s)	232, 333, 663
BspACI	CCGC	1 cut(s)	470
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	3 cut(s)	250, 349, 496
BspPI	GGATC	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	3 cut(s)	232, 333, 663
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	326
BstDEI	CTNAG	4 cut(s)	258, 357, 367, 504
BstKTI	GATC	3 cut(s)	235, 336, 666
BstMAI	GTCTC	2 cut(s)	78, 243
BstMBI	GATC	3 cut(s)	232, 333, 663
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstSNI	TACGTA	1 cut(s)	326
BstV2I	GAAGAC	2 cut(s)	72, 489
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	4 cut(s)	133, 222, 253, 629
CviJI	RGCY	8 cut(s)	146, 154, 226, 257, 418, 465, 571, 642
CviKI_1	RGCY	8 cut(s)	146, 154, 226, 257, 418, 465, 571, 642
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	4 cut(s)	258, 357, 367, 504
DpnI	GATC	3 cut(s)	234, 335, 665
DpnII	GATC	3 cut(s)	232, 333, 663
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	224
Eco105I	TACGTA	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	4 cut(s)	136, 225, 256, 632
FaiI	YATR	9 cut(s)	119, 134, 188, 195, 223, 254, 516, 624, 630
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	4 cut(s)	132, 221, 252, 628
FblI	GTMKAC	2 cut(s)	17, 397
FspBI	CTAG	1 cut(s)	673
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	4 cut(s)	136, 225, 256, 632
HincII	GTYRAC	2 cut(s)	18, 593
HindII	GTYRAC	2 cut(s)	18, 593
HindIII	AAGCTT	2 cut(s)	416, 640
HinfI	GANTC	6 cut(s)	160, 380, 487, 508, 589, 659
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	3 cut(s)	18, 398, 593
Hpy188I	TCNGA	3 cut(s)	358, 462, 600
Hpy188III	TCNNGA	5 cut(s)	64, 200, 217, 248, 503
Hpy8I	GTNNAC	3 cut(s)	18, 398, 593
Hpy99I	CGWCG	2 cut(s)	22, 344
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	3 cut(s)	95, 294, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpyF3I	CTNAG	4 cut(s)	258, 357, 367, 504
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	4 cut(s)	136, 225, 256, 632
Kzo9I	GATC	3 cut(s)	232, 333, 663
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	4 cut(s)	240, 458, 516, 669
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	673
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	200, 423
MalI	GATC	3 cut(s)	234, 335, 665
MboI	GATC	3 cut(s)	232, 333, 663
MboII	GAAGA	9 cut(s)	34, 37, 72, 75, 78, 242, 343, 468, 489
MflI	RGATCY	1 cut(s)	333
MluCI	AATT	3 cut(s)	35, 109, 350
MlyI	GAGTC	3 cut(s)	154, 598, 653
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	3 cut(s)	255, 347, 370
MseI	TTAA	1 cut(s)	138
MspI	CCGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	415
NdeII	GATC	3 cut(s)	232, 333, 663
NlaIII	CATG	4 cut(s)	136, 225, 256, 632
NmuCI	GTSAC	1 cut(s)	200
PfeI	GAWTC	3 cut(s)	380, 487, 508
PleI	GAGTC	3 cut(s)	154, 597, 653
PpsI	GAGTC	3 cut(s)	154, 597, 653
Ppu21I	YACGTR	1 cut(s)	326
PsiI	TTATAA	1 cut(s)	624
PsuI	RGATCY	1 cut(s)	333
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SalI	GTCGAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	232, 333, 663
SchI	GAGTC	3 cut(s)	154, 598, 653
SetI	ASST	8 cut(s)	156, 266, 312, 328, 420, 460, 573, 644
SfaNI	GCATC	1 cut(s)	281
SnaBI	TACGTA	1 cut(s)	326
Sse9I	AATT	3 cut(s)	35, 109, 350
SsiI	CCGC	1 cut(s)	470
SspI	AATATT	1 cut(s)	608
SspMI	CTAG	1 cut(s)	673
StyI	CCWWGG	1 cut(s)	147
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	7 cut(s)	17, 158, 174, 247, 339, 575, 662
TasI	AATT	3 cut(s)	35, 109, 350
TfiI	GAWTC	3 cut(s)	380, 487, 508
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	570
TspGWI	ACGGA	2 cut(s)	219, 651
TspRI	CASTG	1 cut(s)	97
XapI	RAATTY	1 cut(s)	109
XmiI	GTMKAC	2 cut(s)	17, 397
XspI	CTAG	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.