FvH4_6g53490
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000326
Physical Location & Seq
Forward (+)
39200517 .. 39201914
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53490.t1

Sequence Viewer

Length: 927 bp
ATGTTTTCTCAGATCATGGGTCGGAGTAATACAAAGTTACCTTTAGAACTAATAAAGAACGAGAAGTCTCGCAATGTCACTTTTCGAAAGAGGAAGAAGGGATTGATGAAGAAGACTTTTGAACTAAATAAGTTGTGTGATGTGCAGTGTTCTGTTATCATTTACGAGAAGAAACCTAATGGCCAATTAGTTCGCCCAGAGACCTATCCTGAAAACCCTGAAGAGGTCAAGCAAATTATTGATAGGTTTGTCTCCAAATCTGCCAAAGTAAGGAAAGTCGAAAATTTGGCTGATTATTTCGGCAAACAAATCATGCAAGTGAAGAAAGAGACTGCAAAATTGCGCCAAAAGAACAATGAAACTCGATTTCCTTCATGGGATGATAGGCTAAACGACTTGTCATTAGATCAATTGCTTGATCTTTTGAAAAAGCTGGATCACAAAATAGAAGACGTTCATCAGCGTTTTGATAAGCAATATGCTATTGATGTTGGTATACTCTCACAAACGGCCTTGTTTTCGAACAACAACTTGGAGTATTCTCAGATGGTTGCGTTAAACGAATACCCTAATAGTGGTTCGATGATGTACATAAGTGATAGGGCTTTGCCTGAAGAGCAAAGTAATCTCCAAGTGTTTCAAAACAACCTAATCAATTATCCTCAGAGTTACAATAGCGGTTCGATTGTGATGAACAGAAACGGCATGCCATGGCAAAACTACAACATTCAGAGTGCTCCATCAGCATCAAACGGGTCAAATTACGATGAATCAATTACTTCTTTGAGGTTTGAAAATCGCCTGCAATATGGAAGCATGGATGATAATTTAACGTTATGTAATCAAGTTCCGCTGCAGACTGTGTATCCAATGTCTGCAAGTTACTTATGTGATAATGCTAACCAATTCTTGCATCTCAAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

309

Amino Acids

35.68

Weight (kDa)

8.82

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 18 - 63 7.5e-16 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 496
AciI CCGC 2 cut(s) 678, 851
AclI AACGTT 1 cut(s) 833
AclWI GGATC 1 cut(s) 444
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 2 cut(s) 240, 633
AfaI GTAC 1 cut(s) 590
AfiI CCNNNNNNNGG 3 cut(s) 223, 270, 575
AgsI TTSAA 4 cut(s) 122, 427, 641, 794
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AluBI AGCT 1 cut(s) 433
AluI AGCT 1 cut(s) 433
Alw21I GWGCWC 1 cut(s) 739
Alw26I GTCTC 4 cut(s) 72, 194, 256, 323
AlwI GGATC 1 cut(s) 444
AoxI GGCC 2 cut(s) 181, 510
ApeKI GCWGC 1 cut(s) 853
ApoI RAATTY 1 cut(s) 283
Asp700I GAANNNNTTC 1 cut(s) 453
AspLEI GCGC 1 cut(s) 345
AsuII TTCGAA 2 cut(s) 85, 521
BalI TGGCCA 1 cut(s) 183
BbsI GAAGAC 2 cut(s) 119, 456
Bbv12I GWGCWC 1 cut(s) 739
BbvI GCAGC 1 cut(s) 840
BccI CCATC 2 cut(s) 541, 748
BceAI ACGGC 2 cut(s) 525, 718
BciVI GTATCC 1 cut(s) 876
BcoDI GTCTC 4 cut(s) 72, 194, 256, 323
BfaI CTAG 1 cut(s) 925
BfmI CTRYAG 1 cut(s) 854
BfuI GTATCC 1 cut(s) 876
BisI GCNGC 1 cut(s) 854
BlsI GCNGC 1 cut(s) 855
BmsI GCATC 2 cut(s) 755, 922
BpiI GAAGAC 2 cut(s) 119, 456
Bpu14I TTCGAA 2 cut(s) 85, 521
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 710
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 270, 575
Bse3DI GCAATG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 710
BseGI GGATG 2 cut(s) 385, 826
BseLI CCNNNNNNNGG 3 cut(s) 223, 270, 575
BseMI GCAATG 1 cut(s) 79
BseMII CTCAG 3 cut(s) 23, 557, 677
BseXI GCAGC 1 cut(s) 840
BsgI GTGCAG 1 cut(s) 164
BshFI GGCC 2 cut(s) 183, 512
BsiHKAI GWGCWC 1 cut(s) 739
BslI CCNNNNNNNGG 3 cut(s) 223, 270, 575
BsmAI GTCTC 4 cut(s) 72, 194, 256, 323
BsnI GGCC 2 cut(s) 183, 512
Bso31I GGTCTC 1 cut(s) 194
Bsp119I TTCGAA 2 cut(s) 85, 521
Bsp1286I GDGCHC 1 cut(s) 739
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 4 cut(s) 12, 406, 418, 436
Bsp19I CCATGG 1 cut(s) 710
BspACI CCGC 2 cut(s) 678, 851
BspANI GGCC 2 cut(s) 183, 512
BspCNI CTCAG 3 cut(s) 22, 556, 676
BspMAI CTGCAG 1 cut(s) 858
BspPI GGATC 1 cut(s) 444
BspQI GCTCTTC 1 cut(s) 609
BspT104I TTCGAA 2 cut(s) 85, 521
BspTNI GGTCTC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 79
BsrGI TGTACA 1 cut(s) 588
BssECI CCNNGG 1 cut(s) 710
BssMI GATC 4 cut(s) 12, 406, 418, 436
BssNAI GTATAC 1 cut(s) 497
BssT1I CCWWGG 1 cut(s) 710
Bst1107I GTATAC 1 cut(s) 497
Bst4CI ACNGT 1 cut(s) 862
Bst6I CTCTTC 2 cut(s) 216, 609
BstAUI TGTACA 1 cut(s) 588
BstBI TTCGAA 2 cut(s) 85, 521
BstC8I GCNNGC 2 cut(s) 707, 803
BstDEI CTNAG 3 cut(s) 9, 543, 663
BstDSI CCRYGG 1 cut(s) 710
BstF5I GGATG 2 cut(s) 385, 826
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 4 cut(s) 15, 409, 421, 439
BstMAI GTCTC 4 cut(s) 72, 194, 256, 323
BstMBI GATC 4 cut(s) 12, 406, 418, 436
BstMWI GCNNNNNNNGC 2 cut(s) 616, 743
BstNSI RCATGY 1 cut(s) 709
BstSFI CTRYAG 1 cut(s) 854
BstV1I GCAGC 1 cut(s) 840
BstV2I GAAGAC 2 cut(s) 119, 456
BstZ17I GTATAC 1 cut(s) 497
BsuI GTATCC 1 cut(s) 876
BsuRI GGCC 2 cut(s) 183, 512
BtgI CCRYGG 1 cut(s) 710
BtsCI GGATG 2 cut(s) 385, 826
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 707, 803
CfoI GCGC 1 cut(s) 345
Csp6I GTAC 1 cut(s) 589
CviAII CATG 6 cut(s) 16, 313, 375, 706, 711, 817
CviJI RGCY 7 cut(s) 183, 290, 388, 433, 512, 605, 924
CviKI_1 RGCY 7 cut(s) 183, 290, 388, 433, 512, 605, 924
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 3 cut(s) 9, 543, 663
DpnI GATC 4 cut(s) 14, 408, 420, 438
DpnII GATC 4 cut(s) 12, 406, 418, 436
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 2 cut(s) 216, 609
EarI CTCTTC 2 cut(s) 216, 609
Eco130I CCWWGG 1 cut(s) 710
Eco31I GGTCTC 1 cut(s) 194
Eco57I CTGAAG 2 cut(s) 240, 633
EcoT14I CCWWGG 1 cut(s) 710
ErhI CCWWGG 1 cut(s) 710
FaeI CATG 6 cut(s) 19, 316, 378, 709, 714, 820
FatI CATG 6 cut(s) 15, 312, 374, 705, 710, 816
FblI GTMKAC 1 cut(s) 496
Fnu4HI GCNGC 1 cut(s) 854
FokI GGATG 2 cut(s) 392, 833
Fsp4HI GCNGC 1 cut(s) 854
FspBI CTAG 1 cut(s) 925
GlaI GCGC 1 cut(s) 344
GluI GCNGC 1 cut(s) 854
HaeIII GGCC 2 cut(s) 183, 512
HhaI GCGC 1 cut(s) 345
Hin1II CATG 6 cut(s) 19, 316, 378, 709, 714, 820
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HinfI GANTC 1 cut(s) 770
Hpy166II GTNNAC 1 cut(s) 497
Hpy188I TCNGA 5 cut(s) 12, 24, 546, 666, 732
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 497
HpyAV CCTTC 2 cut(s) 91, 381
HpyCH4III ACNGT 1 cut(s) 862
HpyCH4IV ACGT 2 cut(s) 453, 833
HpyCH4V TGCA 7 cut(s) 145, 316, 335, 805, 856, 878, 913
HpyF10VI GCNNNNNNNGC 2 cut(s) 616, 743
HpyF3I CTNAG 3 cut(s) 9, 543, 663
HpySE526I ACGT 2 cut(s) 453, 833
Hsp92II CATG 6 cut(s) 19, 316, 378, 709, 714, 820
HspAI GCGC 1 cut(s) 343
Kzo9I GATC 4 cut(s) 12, 406, 418, 436
LguI GCTCTTC 1 cut(s) 609
LmnI GCTCC 1 cut(s) 742
LpnPI CCDG 6 cut(s) 210, 222, 231, 419, 624, 815
Lsp1109I GCAGC 1 cut(s) 840
LweI GCATC 2 cut(s) 755, 922
MaeI CTAG 1 cut(s) 925
MaeII ACGT 2 cut(s) 453, 833
MaeIII GTNAC 4 cut(s) 36, 76, 668, 881
MalI GATC 4 cut(s) 14, 408, 420, 438
MboI GATC 4 cut(s) 12, 406, 418, 436
MboII GAAGA 8 cut(s) 106, 121, 124, 181, 233, 334, 461, 626
MfeI CAATTG 1 cut(s) 410
MhlI GDGCHC 1 cut(s) 739
MlsI TGGCCA 1 cut(s) 183
MluNI TGGCCA 1 cut(s) 183
MnlI CCTC 4 cut(s) 84, 217, 672, 780
Mox20I TGGCCA 1 cut(s) 183
MroXI GAANNNNTTC 1 cut(s) 453
MscI TGGCCA 1 cut(s) 183
MseI TTAA 2 cut(s) 557, 830
MslI CAYNNNNRTG 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 853
MunI CAATTG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 616, 743
NcoI CCATGG 1 cut(s) 710
NdeII GATC 4 cut(s) 12, 406, 418, 436
NlaIII CATG 6 cut(s) 19, 316, 378, 709, 714, 820
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 1 cut(s) 709
NspV TTCGAA 2 cut(s) 85, 521
PaeI GCATGC 1 cut(s) 709
PciSI GCTCTTC 1 cut(s) 609
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 1 cut(s) 770
PkrI GCNGC 1 cut(s) 855
Psp1406I AACGTT 1 cut(s) 833
PstI CTGCAG 1 cut(s) 858
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
RseI CAYNNNNRTG 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 609
SaqAI TTAA 2 cut(s) 557, 830
SatI GCNGC 1 cut(s) 854
Sau3AI GATC 4 cut(s) 12, 406, 418, 436
SduI GDGCHC 1 cut(s) 739
SfaNI GCATC 2 cut(s) 755, 922
SfcI CTRYAG 1 cut(s) 854
SfuI TTCGAA 2 cut(s) 85, 521
SmiMI CAYNNNNRTG 1 cut(s) 317
SphI GCATGC 1 cut(s) 709
SsiI CCGC 2 cut(s) 678, 851
SspMI CTAG 1 cut(s) 925
StyI CCWWGG 1 cut(s) 710
TaaI ACNGT 1 cut(s) 862
TaiI ACGT 2 cut(s) 456, 836
TaqI TCGA 6 cut(s) 85, 279, 364, 521, 581, 683
TatI WGTACW 1 cut(s) 588
TfiI GAWTC 1 cut(s) 770
Tru1I TTAA 2 cut(s) 557, 830
Tru9I TTAA 2 cut(s) 557, 830
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 853
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 6 cut(s) 122, 363, 372, 446, 707, 783
TspRI CASTG 1 cut(s) 152
XapI RAATTY 1 cut(s) 283
XceI RCATGY 1 cut(s) 709
XmiI GTMKAC 1 cut(s) 496
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.