pycom09g17250

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000326
Physical Location & Seq
Forward (+)
17707406 .. 17707889
484 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17250.2

Sequence Viewer

Length: 306 bp
ATGAAGAAGGCCTACGAGTTTTCAACTCTCTTCGAACTAGATGTGTGCATGACCATCTGTGGCCCGAAACAGACTGCAGGTCGGCCCCCTGAACTCCACACATGGCCAGAAAACCGGAATGAGGTCAATCCGCGTAAGAAGATGTACGAGGCCAAGTACCCAACATGGGATGAACGCATCGAAAGTTTGTCAGAAAATCGACTAGAGGCGCTTTTGAATTCGCTAGATGCTAAGCTCGAGTTTGGCAAGAGAACATTACTTCATAAGAGGAACCAGTCATTCATCAAGCCAAAATCGGCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.85

Weight (kDa)

9.17

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 68
AccII CGCG 1 cut(s) 133
AciI CCGC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 104
AcsI RAATTY 1 cut(s) 217
AfaI GTAC 2 cut(s) 146, 158
AfiI CCNNNNNNNGG 2 cut(s) 121, 166
AgsI TTSAA 2 cut(s) 24, 217
AhdI GACNNNNNGTC 1 cut(s) 78
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 6 cut(s) 9, 61, 83, 104, 150, 297
ApoI RAATTY 1 cut(s) 217
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 2 cut(s) 62, 84
AsuII TTCGAA 1 cut(s) 33
AvaI CYCGRG 1 cut(s) 236
BalI TGGCCA 1 cut(s) 106
BarI GAAGNNNNNNTAC 1 cut(s) 28
BccI CCATC 1 cut(s) 62
BfaI CTAG 3 cut(s) 38, 203, 224
BfmI CTRYAG 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 68
BlpI GCTNAGC 1 cut(s) 231
BmeRI GACNNNNNGTC 1 cut(s) 78
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 62, 84
BmiI GGNNCC 2 cut(s) 86, 272
BmsI GCATC 2 cut(s) 186, 217
Bpu1102I GCTNAGC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 166
Bse1I ACTGG 1 cut(s) 274
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 121, 166
BseNI ACTGG 1 cut(s) 274
Bsh1236I CGCG 1 cut(s) 133
BshFI GGCC 6 cut(s) 11, 63, 85, 106, 152, 299
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 121, 166
BsnI GGCC 6 cut(s) 11, 63, 85, 106, 152, 299
BsoBI CYCGRG 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 33
Bsp1720I GCTNAGC 1 cut(s) 231
BspACI CCGC 1 cut(s) 131
BspANI GGCC 6 cut(s) 11, 63, 85, 106, 152, 299
BspFNI CGCG 1 cut(s) 133
BspLI GGNNCC 2 cut(s) 86, 272
BspMAI CTGCAG 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 68
BspT104I TTCGAA 1 cut(s) 33
BsrI ACTGG 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 35
BstBI TTCGAA 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 1 cut(s) 133
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 1 cut(s) 133
BsuRI GGCC 6 cut(s) 11, 63, 85, 106, 152, 299
BtsCI GGATG 1 cut(s) 175
BveI ACCTGC 1 cut(s) 68
CfoI GCGC 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 62, 84
Csp6I GTAC 2 cut(s) 145, 157
CviAII CATG 3 cut(s) 49, 102, 165
CviJI RGCY 8 cut(s) 11, 63, 85, 106, 152, 235, 289, 299
CviKI_1 RGCY 8 cut(s) 11, 63, 85, 106, 152, 235, 289, 299
CviQI GTAC 2 cut(s) 145, 157
DdeI CTNAG 1 cut(s) 231
DriI GACNNNNNGTC 1 cut(s) 78
EaeI YGGCCR 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 35
Eam1105I GACNNNNNGTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 35
Eco147I AGGCCT 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 217
FaeI CATG 3 cut(s) 52, 105, 168
FaiI YATR 4 cut(s) 50, 103, 166, 264
FatI CATG 3 cut(s) 48, 101, 164
FokI GGATG 1 cut(s) 182
FspBI CTAG 3 cut(s) 38, 203, 224
GlaI GCGC 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 212
HaeIII GGCC 6 cut(s) 11, 63, 85, 106, 152, 299
HapII CCGG 1 cut(s) 115
HhaI GCGC 1 cut(s) 211
Hin1II CATG 3 cut(s) 52, 105, 168
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HpaII CCGG 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 48, 77
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 3 cut(s) 52, 105, 168
HspAI GCGC 1 cut(s) 209
LpnPI CCDG 5 cut(s) 63, 102, 120, 128, 287
LweI GCATC 2 cut(s) 186, 217
MaeI CTAG 3 cut(s) 38, 203, 224
MboII GAAGA 3 cut(s) 16, 22, 151
MlsI TGGCCA 1 cut(s) 106
MluCI AATT 1 cut(s) 217
MluNI TGGCCA 1 cut(s) 106
MnlI CCTC 4 cut(s) 115, 142, 199, 261
Mox20I TGGCCA 1 cut(s) 106
MscI TGGCCA 1 cut(s) 106
Msp20I TGGCCA 1 cut(s) 106
MspI CCGG 1 cut(s) 115
MvnI CGCG 1 cut(s) 133
NlaIII CATG 3 cut(s) 52, 105, 168
NlaIV GGNNCC 2 cut(s) 86, 272
NspV TTCGAA 1 cut(s) 33
PaeR7I CTCGAG 1 cut(s) 236
PceI AGGCCT 1 cut(s) 11
PspN4I GGNNCC 2 cut(s) 86, 272
PspPI GGNCC 2 cut(s) 62, 84
PspXI VCTCGAGB 1 cut(s) 236
PstI CTGCAG 1 cut(s) 79
RsaI GTAC 2 cut(s) 146, 158
RsaNI GTAC 2 cut(s) 145, 157
Sau96I GGNCC 2 cut(s) 62, 84
SetI ASST 3 cut(s) 82, 126, 237
SfaNI GCATC 2 cut(s) 186, 217
SfcI CTRYAG 1 cut(s) 75
Sfr274I CTCGAG 1 cut(s) 236
SfuI TTCGAA 1 cut(s) 33
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 1 cut(s) 217
SseBI AGGCCT 1 cut(s) 11
SsiI CCGC 1 cut(s) 131
SspMI CTAG 3 cut(s) 38, 203, 224
StuI AGGCCT 1 cut(s) 11
TaqI TCGA 4 cut(s) 33, 180, 199, 237
TasI AATT 1 cut(s) 217
TspDTI ATGAA 4 cut(s) 17, 186, 251, 271
XapI RAATTY 1 cut(s) 217
XhoI CTCGAG 1 cut(s) 236
XspI CTAG 3 cut(s) 38, 203, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.