Rh1AG093000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000326
Physical Location & Seq
Forward (+)
16197274 .. 16197525
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG093000.1

Sequence Viewer

Length: 252 bp
ATGAAGGACAATGACATCAAAGGTACAAGAAGTCCTTCATCCCTGGGGGAAATCAGAGACGCCACAGATGCTACTACTGCCCATTCTACTTGTAGTCATGAAACAAATAACAAGATAAAATTGGACTTAAATCTTTCTGATTCTTATGATTCCGAATTGATTGGAGATGAAGAGGCAAAGCTTGCTTCACTGGAAGCTAAGCTACAAGCTATAACCAACAGAATTGCTTTACGGGAGGCAACGCATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.06

Weight (kDa)

4.9

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 1 cut(s) 25
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 4 cut(s) 181, 197, 202, 209
AluI AGCT 4 cut(s) 181, 197, 202, 209
Alw26I GTCTC 1 cut(s) 51
Asp700I GAANNNNTTC 1 cut(s) 34
BarI GAAGNNNNNNTAC 2 cut(s) 186, 218
BciT130I CCWGG 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 51
BlpI GCTNAGC 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 58
Bpu1102I GCTNAGC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 42, 43
Bse1I ACTGG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 42, 43
BseGI GGATG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 51
BsmBI CGTCTC 1 cut(s) 51
Bsp1720I GCTNAGC 1 cut(s) 198
BspHI TCATGA 1 cut(s) 97
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 42, 43
BssNI GRCGYC 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 38
BstMAI GTCTC 1 cut(s) 51
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 182
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 183
CciI TCATGA 1 cut(s) 97
CseI GACGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 24
CviAII CATG 2 cut(s) 98, 245
CviJI RGCY 4 cut(s) 181, 197, 202, 209
CviKI_1 RGCY 4 cut(s) 181, 197, 202, 209
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 2 cut(s) 101, 248
FaiI YATR 4 cut(s) 99, 147, 212, 246
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FatI CATG 2 cut(s) 97, 244
FokI GGATG 1 cut(s) 25
HgaI GACGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 2 cut(s) 101, 248
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 2 cut(s) 140, 149
Hpy188I TCNGA 3 cut(s) 56, 139, 154
Hpy188III TCNNGA 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 182
HpyF3I CTNAG 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 2 cut(s) 101, 248
LpnPI CCDG 3 cut(s) 29, 56, 176
LweI GCATC 1 cut(s) 58
MboII GAAGA 1 cut(s) 182
MluCI AATT 3 cut(s) 119, 155, 222
MnlI CCTC 2 cut(s) 166, 229
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 2 cut(s) 128, 250
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 182
NlaIII CATG 2 cut(s) 101, 248
PagI TCATGA 1 cut(s) 97
PasI CCCWGGG 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 2 cut(s) 140, 149
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 128, 250
ScrFI CCNGG 1 cut(s) 44
SetI ASST 5 cut(s) 25, 183, 199, 204, 211
SfaNI GCATC 1 cut(s) 58
Sse9I AATT 3 cut(s) 119, 155, 222
StyD4I CCNGG 1 cut(s) 42
TasI AATT 3 cut(s) 119, 155, 222
TfiI GAWTC 2 cut(s) 140, 149
Tru1I TTAA 2 cut(s) 128, 250
Tru9I TTAA 2 cut(s) 128, 250
TscAI CASTG 1 cut(s) 195
TspDTI ATGAA 4 cut(s) 17, 27, 114, 183
TspRI CASTG 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.