Rw5G010930
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000326
Physical Location & Seq
Forward (+)
12033706 .. 12034913
1208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G010930.1

Sequence Viewer

Length: 894 bp
ATGTTTTCTCAGATCATGGGTCGCAGTAATACAAAGTTGCCTTTGGAACTAATAAAGAATGAGAAGTCTCGCAATGTCACTTTTCGAAAGAGGAAGAAGGGATTGATGAAGAAGACGTATGAATTGAACAAGCTTTGTGATGTGCAGTGTTCTGTTATCATTTATGAGAACAAAAATGGCCAACTGGTCCGGCCGGATGCCTATCCTGAAAACCATGAAGAGGTCAAGCAAATTATTGATAGATTTGTCTCCAAATCAGCCAAAGTAAGGAAAGTTGAAAACTTGGCTGATTTTTTCGGCAAACAAATCATGCAAGTGAAGAAAGAGACTGCCAAATTGCACCAAAGGAACAATGAAGCTCGGTTTCCTTCATGGCATGACATGCTAGATGACTTCTCATTAGATCAATTGCTTGCTCTTTTGAAAAAACTAGAGCACAAAATCGAAGACGTGCACAAGCATTATGATAAGCAATGTGTTATTGATGACAATATACTACGACAAACGGCCTTGTTTCCAAACAACAACGTAGACTATTCTCAAATGGTTGCATTGAACCAATACCTTACTAGTGAGCAAACTAATCTCCAAGCCTTGTTTCAGAACAATCTAATCAATTTTCACCATAATTACAATTACGGTTCTATCATGACGAACGGCAGAAACGGCATGCCGTGGCAGAACTACAGCATTCAGAGTGCTCCATCAGCATCAAACGGATCAAATTATGACGAACAAAGTACAGCTATGAAGTGTGAAAATCATCTGCAATACGGAAACATCAATGAAAATTTGACAGTATGTAATCACGTCCCGTCGCAGCAGACTGTGTATCCAATGTCCGCAAGTTATTTGTTTGATAATGCCAACCAATTCTTGCATCTCAAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

297

Amino Acids

34.54

Weight (kDa)

8.78

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 18 - 62 1.9e-16 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 531
AciI CCGC 1 cut(s) 843
AclWI GGATC 1 cut(s) 727
AcoI YGGCCR 2 cut(s) 178, 191
AcsI RAATTY 1 cut(s) 790
AfaI GTAC 1 cut(s) 742
AfiI CCNNNNNNNGG 2 cut(s) 220, 267
AgsI TTSAA 4 cut(s) 127, 278, 424, 556
AhlI ACTAGT 1 cut(s) 569
AjiI CACGTC 2 cut(s) 451, 811
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
AluBI AGCT 3 cut(s) 133, 359, 746
AluI AGCT 3 cut(s) 133, 359, 746
Alw21I GWGCWC 3 cut(s) 438, 456, 703
Alw26I GTCTC 3 cut(s) 72, 253, 320
Alw44I GTGCAC 1 cut(s) 452
AlwI GGATC 1 cut(s) 727
AoxI GGCC 3 cut(s) 178, 191, 507
ApaLI GTGCAC 1 cut(s) 452
ApeKI GCWGC 1 cut(s) 820
ApoI RAATTY 1 cut(s) 790
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 614
AsuII TTCGAA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 456
BalI TGGCCA 1 cut(s) 180
BbsI GAAGAC 2 cut(s) 119, 453
Bbv12I GWGCWC 3 cut(s) 438, 456, 703
BbvI GCAGC 1 cut(s) 832
BccI CCATC 1 cut(s) 712
BceAI ACGGC 4 cut(s) 522, 658, 673, 682
BciVI GTATCC 1 cut(s) 843
BcoDI GTCTC 3 cut(s) 72, 253, 320
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 4 cut(s) 386, 431, 570, 892
BfmI CTRYAG 1 cut(s) 685
BfuI GTATCC 1 cut(s) 843
BisI GCNGC 1 cut(s) 821
BlsI GCNGC 1 cut(s) 822
Bme18I GGWCC 1 cut(s) 187
BmgBI CACGTC 2 cut(s) 451, 811
BmgT120I GGNCC 1 cut(s) 187
BmsI GCATC 3 cut(s) 187, 719, 889
BpiI GAAGAC 2 cut(s) 119, 453
Bpu14I TTCGAA 1 cut(s) 85
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 674
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 267
Bse1I ACTGG 1 cut(s) 189
Bse3DI GCAATG 2 cut(s) 79, 479
Bse8I GATNNNNATC 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 674
BseGI GGATG 1 cut(s) 202
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 2 cut(s) 220, 267
BseMI GCAATG 2 cut(s) 79, 479
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 189
BseSI GKGCMC 1 cut(s) 456
BseX3I CGGCCG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 832
BsgI GTGCAG 1 cut(s) 164
Bsh1285I CGRYCG 1 cut(s) 194
BshFI GGCC 3 cut(s) 180, 193, 509
BsiEI CGRYCG 1 cut(s) 194
BsiHKAI GWGCWC 3 cut(s) 438, 456, 703
BsiSI CCGG 2 cut(s) 190, 194
BslFI GGGAC 1 cut(s) 797
BslI CCNNNNNNNGG 2 cut(s) 220, 267
BsmAI GTCTC 3 cut(s) 72, 253, 320
BsmFI GGGAC 1 cut(s) 797
BsmI GAATGC 1 cut(s) 690
BsnI GGCC 3 cut(s) 180, 193, 509
Bsp119I TTCGAA 1 cut(s) 85
Bsp1286I GDGCHC 3 cut(s) 438, 456, 703
Bsp143I GATC 3 cut(s) 12, 403, 719
BspACI CCGC 1 cut(s) 843
BspANI GGCC 3 cut(s) 180, 193, 509
BspCNI CTCAG 1 cut(s) 22
BspHI TCATGA 1 cut(s) 648
BspPI GGATC 1 cut(s) 727
BspT104I TTCGAA 1 cut(s) 85
BsrDI GCAATG 2 cut(s) 79, 479
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 674
BssMI GATC 3 cut(s) 12, 403, 719
Bst4CI ACNGT 3 cut(s) 641, 799, 829
Bst6I CTCTTC 1 cut(s) 213
BstAPI GCANNNNNTGC 1 cut(s) 382
BstBI TTCGAA 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 414, 671
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 1 cut(s) 674
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 3 cut(s) 15, 406, 722
BstMAI GTCTC 3 cut(s) 72, 253, 320
BstMBI GATC 3 cut(s) 12, 403, 719
BstMCI CGRYCG 1 cut(s) 194
BstMWI GCNNNNNNNGC 3 cut(s) 382, 666, 707
BstNSI RCATGY 2 cut(s) 385, 673
BstSFI CTRYAG 1 cut(s) 685
BstSLI GKGCMC 1 cut(s) 456
BstV1I GCAGC 1 cut(s) 832
BstV2I GAAGAC 2 cut(s) 119, 453
BstZI CGGCCG 1 cut(s) 191
BsuI GTATCC 1 cut(s) 843
BsuRI GGCC 3 cut(s) 180, 193, 509
BtgI CCRYGG 1 cut(s) 674
BtrI CACGTC 2 cut(s) 451, 811
BtsCI GGATG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 414, 671
CciI TCATGA 1 cut(s) 648
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 741
CviAII CATG 8 cut(s) 16, 215, 310, 372, 377, 382, 649, 670
CviQI GTAC 1 cut(s) 741
DdeI CTNAG 1 cut(s) 9
DpnI GATC 3 cut(s) 14, 405, 721
DpnII GATC 3 cut(s) 12, 403, 719
EaeI YGGCCR 2 cut(s) 178, 191
EagI CGGCCG 1 cut(s) 191
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EclXI CGGCCG 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 187
Eco52I CGGCCG 1 cut(s) 191
FaeI CATG 8 cut(s) 19, 218, 313, 375, 380, 385, 652, 673
FaqI GGGAC 1 cut(s) 797
FatI CATG 8 cut(s) 15, 214, 309, 371, 376, 381, 648, 669
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 1 cut(s) 821
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 821
FspBI CTAG 4 cut(s) 386, 431, 570, 892
GluI GCNGC 1 cut(s) 821
HaeIII GGCC 3 cut(s) 180, 193, 509
HapII CCGG 2 cut(s) 190, 194
Hin1II CATG 8 cut(s) 19, 218, 313, 375, 380, 385, 652, 673
HindIII AAGCTT 1 cut(s) 131
HpaII CCGG 2 cut(s) 190, 194
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 2 cut(s) 454, 532
Hpy188I TCNGA 3 cut(s) 12, 603, 696
Hpy188III TCNNGA 2 cut(s) 206, 649
Hpy8I GTNNAC 2 cut(s) 454, 532
Hpy99I CGWCG 1 cut(s) 820
HpyAV CCTTC 2 cut(s) 91, 378
HpyCH4III ACNGT 3 cut(s) 641, 799, 829
HpyCH4IV ACGT 4 cut(s) 116, 450, 528, 810
HpyCH4V TGCA 7 cut(s) 145, 313, 340, 454, 551, 769, 880
HpyF10VI GCNNNNNNNGC 3 cut(s) 382, 666, 707
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 4 cut(s) 116, 450, 528, 810
Hsp92II CATG 8 cut(s) 19, 218, 313, 375, 380, 385, 652, 673
Kzo9I GATC 3 cut(s) 12, 403, 719
LmnI GCTCC 1 cut(s) 706
LpnPI CCDG 4 cut(s) 170, 203, 207, 219
Lsp1109I GCAGC 1 cut(s) 832
LweI GCATC 3 cut(s) 187, 719, 889
MaeI CTAG 4 cut(s) 386, 431, 570, 892
MaeII ACGT 4 cut(s) 116, 450, 528, 810
MaeIII GTNAC 1 cut(s) 76
MalI GATC 3 cut(s) 14, 405, 721
MboI GATC 3 cut(s) 12, 403, 719
MboII GAAGA 6 cut(s) 106, 121, 124, 230, 331, 458
MfeI CAATTG 1 cut(s) 407
MhlI GDGCHC 3 cut(s) 438, 456, 703
MlsI TGGCCA 1 cut(s) 180
MluNI TGGCCA 1 cut(s) 180
MnlI CCTC 2 cut(s) 84, 214
Mox20I TGGCCA 1 cut(s) 180
MscI TGGCCA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 314
Msp20I TGGCCA 1 cut(s) 180
MspI CCGG 2 cut(s) 190, 194
MunI CAATTG 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 690
MwoI GCNNNNNNNGC 3 cut(s) 382, 666, 707
NdeII GATC 3 cut(s) 12, 403, 719
NlaIII CATG 8 cut(s) 19, 218, 313, 375, 380, 385, 652, 673
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 2 cut(s) 385, 673
NspV TTCGAA 1 cut(s) 85
PaeI GCATGC 1 cut(s) 673
PagI TCATGA 1 cut(s) 648
PctI GAATGC 1 cut(s) 690
PkrI GCNGC 1 cut(s) 822
PspPI GGNCC 1 cut(s) 187
RsaI GTAC 1 cut(s) 742
RsaNI GTAC 1 cut(s) 741
RseI CAYNNNNRTG 1 cut(s) 314
SatI GCNGC 1 cut(s) 821
Sau3AI GATC 3 cut(s) 12, 403, 719
Sau96I GGNCC 1 cut(s) 187
SduI GDGCHC 3 cut(s) 438, 456, 703
SetI ASST 9 cut(s) 119, 135, 225, 361, 453, 531, 567, 748, 813
SfaNI GCATC 3 cut(s) 187, 719, 889
SfcI CTRYAG 1 cut(s) 685
SfuI TTCGAA 1 cut(s) 85
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 314
SpeI ACTAGT 1 cut(s) 569
SphI GCATGC 1 cut(s) 673
SsiI CCGC 1 cut(s) 843
SspMI CTAG 4 cut(s) 386, 431, 570, 892
TaaI ACNGT 3 cut(s) 641, 799, 829
TaiI ACGT 4 cut(s) 119, 453, 531, 813
TaqI TCGA 2 cut(s) 85, 444
TatI WGTACW 1 cut(s) 740
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 820
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 7 cut(s) 122, 135, 231, 360, 369, 764, 801
TspGWI ACGGA 2 cut(s) 732, 789
TspRI CASTG 1 cut(s) 152
VneI GTGCAC 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 790
XceI RCATGY 2 cut(s) 385, 673
XmiI GTMKAC 1 cut(s) 531
XspI CTAG 4 cut(s) 386, 431, 570, 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.