RchiOBHm_Chr2g0175531
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000326
Physical Location & Seq
Forward (+)
87701682 .. 87703036
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54260

Sequence Viewer

Length: 975 bp
ATGTTAGTTTTGGTTCGATCACTTATGCAATATCTTCTATGTATGTTTTCTCAGATCATGGGTCGAAGTAATACAAAGTTGCCTTTGGAACTAATAAAGAATGAGAAGTCTCGCAATGTCACTTTTCGAAAGAGGAAGAAGGGATTGATGAAGAAGACGTATGAATTGAACAAGCTTTGTGATGTGCAGTGTTCTGTTATCATTTATGAGAACAAAAACGGCCAACTGGTCCGGCCGGATACCTATCCTGAAAACCCTGAAGAGGTCAAGCAAATTATTGATAGATTTGTCTCCAAATCAGCCAAAGTAAGGAAAGTTGAAAACTTGGCTGATTTTTTCAGCAAACAAATCATGCAAGTGAAGAAAGAGACTGCCAAATTGCGCCAAAAGAACAATGAAGCTCGGTTTCCTTCATGGGATGACAGGTTAGATGACTTCTCATTAGATCAATTGCTTGCTCTTTTGAAAAAACTGGAGCACAAAATCGAAGACGTGCACAAGCATTATGATAAGCAATATGCTATTGATGACAGTATACTACAACAAACGGCCTTGTTTCCGAACAACAACGTAGACTATTCACAGATGGTTGCATTGAACCAATACCCTACTAGTGGTTCGATGATGTACACAAGTGATAGGGCTTTGCCTGAAGAACAAACTAATCTCCAAGGCTTGTTTCAGAACAACCTAATCAATTATCACCAGAATTACAATTACTGTTCTATCACGATGAACAACAGAAACGGCATGCCATGGCAGAACTACAACATTCAGAGTGCTCCATCAGCATCAAACGGATCAAATTACGACGAACAAAGTACATCTATGAAGTGTGAAAATCGTCTGCAATACGGAAACATCGATGAAAATTTGACATTATGTAATCACGTCCCACCACAACAGACTGTGTATCCAATGTCCGCAAGTTATTTGTTTGATAATGCAAACCAATTCTTGCATCTCAAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

324

Amino Acids

37.81

Weight (kDa)

8.7

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 32 - 76 2.1e-16 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 535, 573
AciI CCGC 1 cut(s) 924
AclWI GGATC 1 cut(s) 808
AcoI YGGCCR 2 cut(s) 220, 233
AcsI RAATTY 1 cut(s) 871
AcuI CTGAAG 2 cut(s) 279, 672
AfaI GTAC 2 cut(s) 629, 823
AfiI CCNNNNNNNGG 3 cut(s) 262, 309, 614
AgsI TTSAA 4 cut(s) 169, 320, 466, 598
AhlI ACTAGT 1 cut(s) 611
AjiI CACGTC 2 cut(s) 493, 892
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AluBI AGCT 2 cut(s) 175, 401
AluI AGCT 2 cut(s) 175, 401
Alw21I GWGCWC 3 cut(s) 480, 498, 784
Alw26I GTCTC 3 cut(s) 114, 295, 362
Alw44I GTGCAC 1 cut(s) 494
AlwI GGATC 1 cut(s) 808
AoxI GGCC 3 cut(s) 220, 233, 549
ApaLI GTGCAC 1 cut(s) 494
ApoI RAATTY 1 cut(s) 871
AspLEI GCGC 1 cut(s) 384
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 695
AsuII TTCGAA 1 cut(s) 127
AvaII GGWCC 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 498
BbsI GAAGAC 2 cut(s) 161, 495
Bbv12I GWGCWC 3 cut(s) 480, 498, 784
BccI CCATC 2 cut(s) 580, 793
BceAI ACGGC 3 cut(s) 235, 564, 763
BciVI GTATCC 2 cut(s) 232, 924
BcoDI GTCTC 3 cut(s) 114, 295, 362
BcuI ACTAGT 1 cut(s) 611
BfaI CTAG 2 cut(s) 612, 973
BfuI GTATCC 2 cut(s) 232, 924
Bme18I GGWCC 1 cut(s) 229
BmgBI CACGTC 2 cut(s) 493, 892
BmgT120I GGNCC 1 cut(s) 229
BmsI GCATC 2 cut(s) 800, 970
BpiI GAAGAC 2 cut(s) 161, 495
BpmI CTGGAG 1 cut(s) 494
Bpu14I TTCGAA 1 cut(s) 127
Bsa29I ATCGAT 1 cut(s) 864
BsaBI GATNNNNATC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 670, 755
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 309, 614
Bse1I ACTGG 2 cut(s) 231, 477
Bse3DI GCAATG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 243
BseCI ATCGAT 1 cut(s) 864
BseDI CCNNGG 2 cut(s) 670, 755
BseGI GGATG 1 cut(s) 424
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 3 cut(s) 262, 309, 614
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 65
BseNI ACTGG 2 cut(s) 231, 477
BseSI GKGCMC 1 cut(s) 498
BseX3I CGGCCG 1 cut(s) 233
BsgI GTGCAG 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 236
BshFI GGCC 3 cut(s) 222, 235, 551
BshVI ATCGAT 1 cut(s) 864
BsiEI CGRYCG 1 cut(s) 236
BsiHKAI GWGCWC 3 cut(s) 480, 498, 784
BsiSI CCGG 2 cut(s) 232, 236
BslFI GGGAC 1 cut(s) 878
BslI CCNNNNNNNGG 3 cut(s) 262, 309, 614
BsmAI GTCTC 3 cut(s) 114, 295, 362
BsmFI GGGAC 1 cut(s) 878
BsnI GGCC 3 cut(s) 222, 235, 551
Bsp119I TTCGAA 1 cut(s) 127
Bsp1286I GDGCHC 3 cut(s) 480, 498, 784
Bsp1407I TGTACA 1 cut(s) 627
Bsp143I GATC 4 cut(s) 17, 54, 445, 800
Bsp19I CCATGG 1 cut(s) 755
BspACI CCGC 1 cut(s) 924
BspANI GGCC 3 cut(s) 222, 235, 551
BspCNI CTCAG 1 cut(s) 64
BspDI ATCGAT 1 cut(s) 864
BspPI GGATC 1 cut(s) 808
BspT104I TTCGAA 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 2 cut(s) 231, 477
BssECI CCNNGG 2 cut(s) 670, 755
BssMI GATC 4 cut(s) 17, 54, 445, 800
BssNAI GTATAC 1 cut(s) 536
BssT1I CCWWGG 2 cut(s) 670, 755
Bst1107I GTATAC 1 cut(s) 536
Bst4CI ACNGT 3 cut(s) 533, 722, 910
Bst6I CTCTTC 1 cut(s) 255
BstAUI TGTACA 1 cut(s) 627
BstBI TTCGAA 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 456, 752
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 755
BstF5I GGATG 1 cut(s) 424
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 4 cut(s) 20, 57, 448, 803
BstMAI GTCTC 3 cut(s) 114, 295, 362
BstMBI GATC 4 cut(s) 17, 54, 445, 800
BstMCI CGRYCG 1 cut(s) 236
BstMWI GCNNNNNNNGC 1 cut(s) 788
BstNSI RCATGY 1 cut(s) 754
BstSLI GKGCMC 1 cut(s) 498
BstV2I GAAGAC 2 cut(s) 161, 495
BstZ17I GTATAC 1 cut(s) 536
BstZI CGGCCG 1 cut(s) 233
Bsu15I ATCGAT 1 cut(s) 864
BsuI GTATCC 2 cut(s) 232, 924
BsuRI GGCC 3 cut(s) 222, 235, 551
BsuTUI ATCGAT 1 cut(s) 864
BtgI CCRYGG 1 cut(s) 755
BtrI CACGTC 2 cut(s) 493, 892
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 2 cut(s) 456, 752
CfoI GCGC 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 229
ClaI ATCGAT 1 cut(s) 864
Csp6I GTAC 2 cut(s) 628, 822
CviAII CATG 5 cut(s) 58, 352, 414, 751, 756
CviQI GTAC 2 cut(s) 628, 822
DdeI CTNAG 1 cut(s) 51
DpnI GATC 4 cut(s) 19, 56, 447, 802
DpnII GATC 4 cut(s) 17, 54, 445, 800
EaeI YGGCCR 2 cut(s) 220, 233
EagI CGGCCG 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EclXI CGGCCG 1 cut(s) 233
Eco130I CCWWGG 2 cut(s) 670, 755
Eco47I GGWCC 1 cut(s) 229
Eco52I CGGCCG 1 cut(s) 233
Eco57I CTGAAG 2 cut(s) 279, 672
EcoT14I CCWWGG 2 cut(s) 670, 755
ErhI CCWWGG 2 cut(s) 670, 755
FaeI CATG 5 cut(s) 61, 355, 417, 754, 759
FaqI GGGAC 1 cut(s) 878
FatI CATG 5 cut(s) 57, 351, 413, 750, 755
FblI GTMKAC 2 cut(s) 535, 573
FokI GGATG 1 cut(s) 431
FspBI CTAG 2 cut(s) 612, 973
GlaI GCGC 1 cut(s) 383
GsuI CTGGAG 1 cut(s) 494
HaeIII GGCC 3 cut(s) 222, 235, 551
HapII CCGG 2 cut(s) 232, 236
HhaI GCGC 1 cut(s) 384
Hin1II CATG 5 cut(s) 61, 355, 417, 754, 759
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 173
HpaII CCGG 2 cut(s) 232, 236
HphI GGTGA 1 cut(s) 695
Hpy166II GTNNAC 4 cut(s) 496, 536, 574, 630
Hpy188I TCNGA 4 cut(s) 54, 561, 684, 777
Hpy188III TCNNGA 2 cut(s) 248, 730
Hpy8I GTNNAC 4 cut(s) 496, 536, 574, 630
Hpy99I CGWCG 1 cut(s) 815
HpyAV CCTTC 2 cut(s) 133, 420
HpyCH4III ACNGT 3 cut(s) 533, 722, 910
HpyCH4IV ACGT 4 cut(s) 158, 492, 570, 891
HpyCH4V TGCA 8 cut(s) 28, 187, 355, 496, 593, 850, 947, 961
HpyF10VI GCNNNNNNNGC 1 cut(s) 788
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 4 cut(s) 158, 492, 570, 891
Hsp92II CATG 5 cut(s) 61, 355, 417, 754, 759
HspAI GCGC 1 cut(s) 382
Kzo9I GATC 4 cut(s) 17, 54, 445, 800
LmnI GCTCC 2 cut(s) 475, 787
LpnPI CCDG 9 cut(s) 212, 245, 249, 261, 270, 409, 458, 663, 719
LweI GCATC 2 cut(s) 800, 970
MaeI CTAG 2 cut(s) 612, 973
MaeII ACGT 4 cut(s) 158, 492, 570, 891
MaeIII GTNAC 1 cut(s) 118
MalI GATC 4 cut(s) 19, 56, 447, 802
MboI GATC 4 cut(s) 17, 54, 445, 800
MboII GAAGA 8 cut(s) 26, 148, 163, 166, 272, 373, 500, 665
MfeI CAATTG 1 cut(s) 449
MhlI GDGCHC 3 cut(s) 480, 498, 784
MnlI CCTC 2 cut(s) 126, 256
MslI CAYNNNNRTG 1 cut(s) 356
MspI CCGG 2 cut(s) 232, 236
MunI CAATTG 1 cut(s) 449
MwoI GCNNNNNNNGC 1 cut(s) 788
NcoI CCATGG 1 cut(s) 755
NdeII GATC 4 cut(s) 17, 54, 445, 800
NlaIII CATG 5 cut(s) 61, 355, 417, 754, 759
NmuCI GTSAC 1 cut(s) 118
NspI RCATGY 1 cut(s) 754
NspV TTCGAA 1 cut(s) 127
PaeI GCATGC 1 cut(s) 754
PcsI WCGNNNNNNNCGW 1 cut(s) 861
PspPI GGNCC 1 cut(s) 229
RsaI GTAC 2 cut(s) 629, 823
RsaNI GTAC 2 cut(s) 628, 822
RseI CAYNNNNRTG 1 cut(s) 356
Sau3AI GATC 4 cut(s) 17, 54, 445, 800
Sau96I GGNCC 1 cut(s) 229
SduI GDGCHC 3 cut(s) 480, 498, 784
SfaNI GCATC 2 cut(s) 800, 970
SfuI TTCGAA 1 cut(s) 127
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 356
SpeI ACTAGT 1 cut(s) 611
SphI GCATGC 1 cut(s) 754
SsiI CCGC 1 cut(s) 924
SspMI CTAG 2 cut(s) 612, 973
StyI CCWWGG 2 cut(s) 670, 755
TaaI ACNGT 3 cut(s) 533, 722, 910
TaiI ACGT 4 cut(s) 161, 495, 573, 894
TaqI TCGA 6 cut(s) 16, 64, 127, 486, 620, 864
TatI WGTACW 2 cut(s) 627, 821
TscAI CASTG 1 cut(s) 194
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 7 cut(s) 164, 177, 402, 411, 749, 845, 882
TspGWI ACGGA 2 cut(s) 813, 870
TspRI CASTG 1 cut(s) 194
VneI GTGCAC 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 1 cut(s) 871
XceI RCATGY 1 cut(s) 754
XmiI GTMKAC 2 cut(s) 535, 573
XspI CTAG 2 cut(s) 612, 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.