Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

53101117 .. 53102120

Gene Structure 1004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1430800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCACCTCTTCCCAGAGATCGCAGAGAAGATCGAGCAGAAGAAGATGGTGGCTCCTACAAGAAGAAGCTTGGAACTCATACCCAACGAGAGTGCTCGAAAGATGGCCTTTCGGAAGCGAAAGAAAAATGTATACAAGAAGGCCGACGAGCTTTCCAAACTTTGCGACATTGATGTAGCCTTGATTGTCTACGAAGCTGATCAAAACAAGGGCATCAGGCCAATTCAACCGGAGACGTGGCCACAAGATCCAGTTGAATTCAATCGCATTCTCGACAGGTACAAGACTTCCAGGGAGACTGCTGCCCCTGGTTTTTCCAAGAGAAACTTCGATTTGTCTGATTTTTATGAGGCCAGGAAGAAGAAAGATGAGAAAGATTACAGTAATGGTGACGACAATAATGATGATGGTGATGATAGTGATGACGATGAGGATGCTCATGTTGATCCCGAACTTCATAAACCGGGCAATAAACAGATTTCTGAGGACAAGTACCCACCATGGGATCCTCGAATAGACCTGTTTTCACAAGATGAATTGACTAAACTCATCGCTTCACTCGAAGCCAAGATACAAGCCTCGACACTGAGGATTGACTCCATGGACAGATACAAGCTATATGCTGAAAAACAGAATCGAAATTTATCCCGGCCTGAGTCAAGCTCAGGAAAAACACTGCAACATCTGAAGCCTGCGAATTTTGATGTTCAGAAGCCCCCCTCTCAAAACCCAATGAATACTACGACGACTGCTTCTACTACTAGTACTTCAGCCACTCAATCAAAGCCTCCGACGTCTGTGAAATGTCCAATGCTTCCAAGTGCATGGATTTCATTCTCAGAATCACAGAAGACTTCATTAAGGACGTCATCATCTGGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

295

Amino Acids

33.42

Weight (kDa)

6.48

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	27 - 67	2.1e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	797, 869
AccI	GTMKAC	2 cut(s)	132, 189
AclWI	GGATC	4 cut(s)	242, 440, 500, 513
AcoI	YGGCCR	1 cut(s)	239
AcsI	RAATTY	3 cut(s)	257, 640, 697
AcuI	CTGAAG	2 cut(s)	707, 753
AcyI	GRCGYC	2 cut(s)	794, 866
AfaI	GTAC	3 cut(s)	281, 494, 766
AfiI	CCNNNNNNNGG	1 cut(s)	502
AgsI	TTSAA	3 cut(s)	227, 257, 262
AhlI	ACTAGT	1 cut(s)	761
AjiI	CACGTC	1 cut(s)	237
AjnI	CCWGG	3 cut(s)	290, 307, 353
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	5 cut(s)	69, 151, 197, 616, 663
AluI	AGCT	5 cut(s)	69, 151, 197, 616, 663
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	2 cut(s)	227, 290
AlwI	GGATC	4 cut(s)	242, 440, 500, 513
AoxI	GGCC	6 cut(s)	105, 141, 218, 239, 351, 650
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	3 cut(s)	257, 640, 697
AsuC2I	CCSGG	2 cut(s)	465, 649
AsuHPI	GGTGA	2 cut(s)	401, 422
BalI	TGGCCA	1 cut(s)	241
BamHI	GGATCC	1 cut(s)	505
BarI	GAAGNNNNNNTAC	2 cut(s)	555, 587
BbsI	GAAGAC	1 cut(s)	857
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	3 cut(s)	40, 97, 401
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	3 cut(s)	292, 309, 355
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	465, 649
BcoDI	GTCTC	2 cut(s)	227, 290
BcuI	ACTAGT	1 cut(s)	761
BfaI	CTAG	1 cut(s)	762
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
BmcAI	AGTACT	1 cut(s)	766
Bme1390I	CCNGG	5 cut(s)	292, 309, 355, 465, 649
BmgBI	CACGTC	1 cut(s)	237
BmiI	GGNNCC	2 cut(s)	54, 507
BmrFI	CCNGG	5 cut(s)	292, 309, 355, 465, 649
BmsI	GCATC	2 cut(s)	222, 424
BpiI	GAAGAC	1 cut(s)	857
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
Bpu10I	CCTNAGC	1 cut(s)	664
BpuMI	CCSGG	2 cut(s)	465, 649
BsaHI	GRCGYC	2 cut(s)	794, 866
BsaJI	CCNNGG	4 cut(s)	291, 307, 500, 600
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse1I	ACTGG	1 cut(s)	251
BseBI	CCWGG	3 cut(s)	292, 309, 355
BseDI	CCNNGG	4 cut(s)	291, 307, 500, 600
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMII	CTCAG	5 cut(s)	474, 578, 645, 678, 852
BseNI	ACTGG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	6 cut(s)	107, 143, 220, 241, 353, 652
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	230, 464, 649
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	2 cut(s)	227, 290
BsmBI	CGTCTC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	6 cut(s)	107, 143, 220, 241, 353, 652
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	6 cut(s)	18, 30, 199, 247, 445, 505
Bsp19I	CCATGG	2 cut(s)	500, 600
BspANI	GGCC	6 cut(s)	107, 143, 220, 241, 353, 652
BspCNI	CTCAG	5 cut(s)	475, 579, 646, 677, 851
BspLI	GGNNCC	2 cut(s)	54, 507
BspPI	GGATC	4 cut(s)	242, 440, 500, 513
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	4 cut(s)	291, 307, 500, 600
BssMI	GATC	6 cut(s)	18, 30, 199, 247, 445, 505
BssNAI	GTATAC	1 cut(s)	133
BssNI	GRCGYC	2 cut(s)	794, 866
BssT1I	CCWWGG	2 cut(s)	500, 600
Bst1107I	GTATAC	1 cut(s)	133
Bst2UI	CCWGG	3 cut(s)	292, 309, 355
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	2 cut(s)	794, 866
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	5 cut(s)	483, 587, 654, 664, 838
BstDSI	CCRYGG	2 cut(s)	500, 600
BstF5I	GGATG	1 cut(s)	439
BstKTI	GATC	6 cut(s)	21, 33, 202, 250, 448, 508
BstMAI	GTCTC	2 cut(s)	227, 290
BstMBI	GATC	6 cut(s)	18, 30, 199, 247, 445, 505
BstNI	CCWGG	3 cut(s)	292, 309, 355
BstSCI	CCNGG	5 cut(s)	290, 307, 353, 463, 647
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	857
BstX2I	RGATCY	2 cut(s)	247, 505
BstXI	CCANNNNNNTGG	1 cut(s)	825
BstYI	RGATCY	2 cut(s)	247, 505
BstZ17I	GTATAC	1 cut(s)	133
BsuRI	GGCC	6 cut(s)	107, 143, 220, 241, 353, 652
BtgI	CCRYGG	2 cut(s)	500, 600
BtgZI	GCGATG	1 cut(s)	535
BtrI	CACGTC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	439
BtsI	GCAGTG	1 cut(s)	674
BtsIMutI	CAGTG	2 cut(s)	584, 674
Cac8I	GCNNGC	1 cut(s)	693
Csp6I	GTAC	3 cut(s)	280, 493, 765
CviAII	CATG	4 cut(s)	440, 501, 601, 825
CviQI	GTAC	3 cut(s)	280, 493, 765
DdeI	CTNAG	5 cut(s)	483, 587, 654, 664, 838
DpnI	GATC	6 cut(s)	20, 32, 201, 249, 447, 507
DpnII	GATC	6 cut(s)	18, 30, 199, 247, 445, 505
EaeI	YGGCCR	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	500, 600
Eco57I	CTGAAG	2 cut(s)	707, 753
EcoRI	GAATTC	1 cut(s)	257
EcoRII	CCWGG	3 cut(s)	290, 307, 353
EcoT14I	CCWWGG	2 cut(s)	500, 600
ErhI	CCWWGG	2 cut(s)	500, 600
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	4 cut(s)	443, 504, 604, 828
FalI	AAGNNNNNCTT	4 cut(s)	92, 124, 311, 343
FatI	CATG	4 cut(s)	439, 500, 600, 824
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	2 cut(s)	132, 189
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	762
GluI	GCNGC	1 cut(s)	303
HaeIII	GGCC	6 cut(s)	107, 143, 220, 241, 353, 652
HapII	CCGG	3 cut(s)	230, 464, 649
Hin1I	GRCGYC	2 cut(s)	794, 866
Hin1II	CATG	4 cut(s)	443, 504, 604, 828
HindIII	AAGCTT	1 cut(s)	67
HinfI	GANTC	4 cut(s)	596, 634, 656, 842
HpaII	CCGG	3 cut(s)	230, 464, 649
HphI	GGTGA	2 cut(s)	401, 422
Hpy166II	GTNNAC	2 cut(s)	133, 190
Hpy188I	TCNGA	7 cut(s)	114, 340, 484, 687, 711, 792, 841
Hpy188III	TCNNGA	3 cut(s)	272, 449, 666
Hpy8I	GTNNAC	2 cut(s)	133, 190
Hpy99I	CGWCG	3 cut(s)	149, 748, 796
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	3 cut(s)	236, 794, 866
HpyCH4V	TGCA	3 cut(s)	4, 679, 824
HpyF3I	CTNAG	5 cut(s)	483, 587, 654, 664, 838
HpySE526I	ACGT	3 cut(s)	236, 794, 866
Hsp92I	GRCGYC	2 cut(s)	794, 866
Hsp92II	CATG	4 cut(s)	443, 504, 604, 828
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	6 cut(s)	18, 30, 199, 247, 445, 505
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	2 cut(s)	222, 424
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	3 cut(s)	236, 794, 866
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	6 cut(s)	20, 32, 201, 249, 447, 507
MboI	GATC	6 cut(s)	18, 30, 199, 247, 445, 505
MboII	GAAGA	7 cut(s)	40, 52, 55, 75, 370, 373, 862
MflI	RGATCY	2 cut(s)	247, 505
MhlI	GDGCHC	1 cut(s)	97
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	5 cut(s)	222, 257, 536, 640, 697
MluNI	TGGCCA	1 cut(s)	241
MlyI	GAGTC	2 cut(s)	590, 665
MmeI	TCCRAC	1 cut(s)	815
MnlI	CCTC	9 cut(s)	17, 343, 424, 478, 519, 582, 589, 730, 798
Mox20I	TGGCCA	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	241
MseI	TTAA	1 cut(s)	860
Msp20I	TGGCCA	1 cut(s)	241
MspI	CCGG	3 cut(s)	230, 464, 649
MspR9I	CCNGG	5 cut(s)	292, 309, 355, 465, 649
Mva1269I	GAATGC	1 cut(s)	267
MvaI	CCWGG	3 cut(s)	292, 309, 355
NciI	CCSGG	2 cut(s)	465, 649
NcoI	CCATGG	2 cut(s)	500, 600
NdeII	GATC	6 cut(s)	18, 30, 199, 247, 445, 505
NlaIII	CATG	4 cut(s)	443, 504, 604, 828
NlaIV	GGNNCC	2 cut(s)	54, 507
NmuCI	GTSAC	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	558
PctI	GAATGC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	634, 842
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	2 cut(s)	590, 664
PpsI	GAGTC	2 cut(s)	590, 664
Psp6I	CCWGG	3 cut(s)	290, 307, 353
PspGI	CCWGG	3 cut(s)	290, 307, 353
PspN4I	GGNNCC	2 cut(s)	54, 507
PsuI	RGATCY	2 cut(s)	247, 505
RsaI	GTAC	3 cut(s)	281, 494, 766
RsaNI	GTAC	3 cut(s)	280, 493, 765
SaqAI	TTAA	1 cut(s)	860
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	6 cut(s)	18, 30, 199, 247, 445, 505
ScaI	AGTACT	1 cut(s)	766
SchI	GAGTC	2 cut(s)	590, 665
ScrFI	CCNGG	5 cut(s)	292, 309, 355, 465, 649
SduI	GDGCHC	1 cut(s)	97
SfaNI	GCATC	2 cut(s)	222, 424
SpeI	ACTAGT	1 cut(s)	761
Sse9I	AATT	5 cut(s)	222, 257, 536, 640, 697
SspMI	CTAG	1 cut(s)	762
StyD4I	CCNGG	5 cut(s)	290, 307, 353, 463, 647
StyI	CCWWGG	2 cut(s)	500, 600
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	3 cut(s)	239, 797, 869
TaqI	TCGA	8 cut(s)	33, 97, 273, 330, 511, 561, 581, 637
TasI	AATT	5 cut(s)	222, 257, 536, 640, 697
TatI	WGTACW	1 cut(s)	764
TfiI	GAWTC	2 cut(s)	634, 842
Tru1I	TTAA	1 cut(s)	860
Tru9I	TTAA	1 cut(s)	860
TscAI	CASTG	2 cut(s)	591, 681
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	5 cut(s)	446, 549, 749, 822, 846
TspRI	CASTG	2 cut(s)	591, 681
XapI	RAATTY	3 cut(s)	257, 640, 697
XmiI	GTMKAC	2 cut(s)	132, 189
XspI	CTAG	1 cut(s)	762
ZraI	GACGTC	2 cut(s)	795, 867
ZrmI	AGTACT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.