Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

18366522 .. 18367820

Gene Structure 1299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGACTTTCAGAAATATGGACCCTCAACGAAACAAACAACAATTATCGTCAAGCAAGAGTGATCGTAAAAAGGTTCGGGATCGAAAGAAGAATGTGTTCAAGAAAGCCGAGGAGCTTTCGAAACTTTGTGGTGTTGATGTATGCTTGATCCTCTACCAACGTCAAAGCAATATAGCAGAGACTTGGCCCCAAGATCCTGAACAAGTCAAACGCATTGTTGCTGGGTACAAGGCAAACCCAGCAATCAGAGATGCTAGCCTTCCTTCATCTGAGATAAAGGGTTTGAAAGAATCTAGGGCTCGAGAGTCAGATGGTGGTCATTGGATAAAGGGTTTGAAAGAATCTAGGGCTCGAAAGTCATCTAGGGAGATGTTGTACCCGACATGGGATGATAGATTAGATTACTGTACTGAGAAAGAACTGATTAGACTGGTGGCTTCCTTGGATGCAAAGCTAGAAGCTTCAACAAAGAGGATTGATTCACTATCGAGGAAAAGCAGCAAAAGTGGTGCACTTGATCATCATCCCATGGTGAATTCGAACTTGAACTCTGTTCCTTTTCGTGAGATTAATGATCTTCGAAGATCATCCAGAAATTATATTCCAAGCATGCAATTGAAGAGGTCTTCTAATATGCAATACCCGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

217

Amino Acids

24.91

Weight (kDa)

9.95

Isoelectric Point (pI)

55.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	28 - 56	1.1e-09	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	87, 142, 188
AcsI	RAATTY	1 cut(s)	535
AfaI	GTAC	3 cut(s)	227, 377, 409
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	6 cut(s)	100, 286, 337, 465, 547, 619
AluBI	AGCT	3 cut(s)	115, 454, 461
AluI	AGCT	3 cut(s)	115, 454, 461
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	1 cut(s)	173
Alw44I	GTGCAC	1 cut(s)	510
AlwI	GGATC	3 cut(s)	87, 142, 188
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	1 cut(s)	185
ApaLI	GTGCAC	1 cut(s)	510
ApeKI	GCWGC	1 cut(s)	498
ApoI	RAATTY	1 cut(s)	535
AseI	ATTAAT	1 cut(s)	570
Asp700I	GAANNNNTTC	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	19, 186
AsuHPI	GGTGA	1 cut(s)	544
AsuII	TTCGAA	3 cut(s)	119, 539, 580
AsuNHI	GCTAGC	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	19
BaeGI	GKGCMC	1 cut(s)	514
BanII	GRGCYC	2 cut(s)	301, 352
BbsI	GAAGAC	1 cut(s)	618
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	1 cut(s)	305
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	5 cut(s)	255, 294, 345, 363, 455
BisI	GCNGC	1 cut(s)	499
BlsI	GCNGC	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	19, 186
BmiI	GGNNCC	2 cut(s)	21, 188
BmsI	GCATC	2 cut(s)	241, 436
BmtI	GCTAGC	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	618
Bpu14I	TTCGAA	3 cut(s)	119, 539, 580
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	3 cut(s)	108, 441, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	1 cut(s)	435
Bse8I	GATNNNNATC	1 cut(s)	522
BseDI	CCNNGG	3 cut(s)	108, 441, 528
BseGI	GGATG	4 cut(s)	394, 451, 523, 587
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	2 cut(s)	261, 402
BseNI	ACTGG	1 cut(s)	435
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	1 cut(s)	510
BseYI	CCCAGC	2 cut(s)	221, 238
BshFI	GGCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	300
Bsp119I	TTCGAA	3 cut(s)	119, 539, 580
Bsp1286I	GDGCHC	3 cut(s)	301, 352, 514
Bsp143I	GATC	7 cut(s)	61, 79, 147, 193, 517, 574, 584
Bsp19I	CCATGG	1 cut(s)	528
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	2 cut(s)	262, 403
BspLI	GGNNCC	2 cut(s)	21, 188
BspOI	GCTAGC	1 cut(s)	258
BspPI	GGATC	3 cut(s)	87, 142, 188
BspT104I	TTCGAA	3 cut(s)	119, 539, 580
BsrI	ACTGG	1 cut(s)	435
BssECI	CCNNGG	3 cut(s)	108, 441, 528
BssMI	GATC	7 cut(s)	61, 79, 147, 193, 517, 574, 584
BssT1I	CCWWGG	2 cut(s)	441, 528
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	1 cut(s)	614
BstBI	TTCGAA	3 cut(s)	119, 539, 580
BstC8I	GCNNGC	2 cut(s)	256, 611
BstDEI	CTNAG	2 cut(s)	270, 411
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	4 cut(s)	394, 451, 523, 587
BstKTI	GATC	7 cut(s)	64, 82, 150, 196, 520, 577, 587
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	7 cut(s)	61, 79, 147, 193, 517, 574, 584
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	613
BstSLI	GKGCMC	1 cut(s)	514
BstV1I	GCAGC	1 cut(s)	510
BstV2I	GAAGAC	1 cut(s)	618
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	4 cut(s)	394, 451, 523, 587
Cac8I	GCNNGC	2 cut(s)	256, 611
Cfr13I	GGNCC	2 cut(s)	19, 186
Csp6I	GTAC	3 cut(s)	226, 376, 408
CviAII	CATG	3 cut(s)	384, 529, 610
CviJI	RGCY	9 cut(s)	107, 115, 187, 258, 299, 350, 437, 454, 461
CviKI_1	RGCY	9 cut(s)	107, 115, 187, 258, 299, 350, 437, 454, 461
CviQI	GTAC	3 cut(s)	226, 376, 408
DdeI	CTNAG	2 cut(s)	270, 411
DpnI	GATC	7 cut(s)	63, 81, 149, 195, 519, 576, 586
DpnII	GATC	7 cut(s)	61, 79, 147, 193, 517, 574, 584
Eam1104I	CTCTTC	1 cut(s)	614
EarI	CTCTTC	1 cut(s)	614
Eco130I	CCWWGG	2 cut(s)	441, 528
Eco24I	GRGCYC	2 cut(s)	301, 352
Eco47I	GGWCC	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	535
EcoT14I	CCWWGG	2 cut(s)	441, 528
EcoT38I	GRGCYC	2 cut(s)	301, 352
ErhI	CCWWGG	2 cut(s)	441, 528
FaeI	CATG	3 cut(s)	387, 532, 613
FaiI	YATR	9 cut(s)	17, 142, 173, 385, 530, 600, 611, 635, 649
FatI	CATG	3 cut(s)	383, 528, 609
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	1 cut(s)	499
FokI	GGATG	4 cut(s)	401, 458, 510, 574
FriOI	GRGCYC	2 cut(s)	301, 352
Fsp4HI	GCNGC	1 cut(s)	499
FspBI	CTAG	5 cut(s)	255, 294, 345, 363, 455
GluI	GCNGC	1 cut(s)	499
GsaI	CCCAGC	2 cut(s)	225, 242
HaeIII	GGCC	1 cut(s)	187
Hin1II	CATG	3 cut(s)	387, 532, 613
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	4 cut(s)	290, 305, 341, 479
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188I	TCNGA	4 cut(s)	11, 248, 271, 310
Hpy188III	TCNNGA	6 cut(s)	77, 100, 197, 302, 563, 591
Hpy8I	GTNNAC	1 cut(s)	512
HpyAV	CCTTC	2 cut(s)	269, 273
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	4 cut(s)	449, 512, 613, 637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	2 cut(s)	270, 411
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	3 cut(s)	387, 532, 613
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	7 cut(s)	61, 79, 147, 193, 517, 574, 584
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	5 cut(s)	207, 210, 252, 416, 604
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	2 cut(s)	241, 436
MaeI	CTAG	5 cut(s)	255, 294, 345, 363, 455
MaeII	ACGT	1 cut(s)	160
MalI	GATC	7 cut(s)	63, 81, 149, 195, 519, 576, 586
MboI	GATC	7 cut(s)	61, 79, 147, 193, 517, 574, 584
MboII	GAAGA	5 cut(s)	100, 569, 594, 618, 631
MfeI	CAATTG	1 cut(s)	614
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	3 cut(s)	301, 352, 514
MluCI	AATT	4 cut(s)	41, 535, 595, 614
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	6 cut(s)	33, 103, 161, 465, 483, 615
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	1 cut(s)	570
MunI	CAATTG	1 cut(s)	614
MwoI	GCNNNNNNNGC	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	7 cut(s)	61, 79, 147, 193, 517, 574, 584
NheI	GCTAGC	1 cut(s)	254
NlaIII	CATG	3 cut(s)	387, 532, 613
NlaIV	GGNNCC	2 cut(s)	21, 188
NmeAIII	GCCGAG	1 cut(s)	133
NspI	RCATGY	1 cut(s)	613
NspV	TTCGAA	3 cut(s)	119, 539, 580
PaeI	GCATGC	1 cut(s)	613
PaeR7I	CTCGAG	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	3 cut(s)	290, 341, 479
PkrI	GCNGC	1 cut(s)	500
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PshBI	ATTAAT	1 cut(s)	570
PspFI	CCCAGC	2 cut(s)	221, 238
PspN4I	GGNNCC	2 cut(s)	21, 188
PspPI	GGNCC	2 cut(s)	19, 186
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	3 cut(s)	227, 377, 409
RsaNI	GTAC	3 cut(s)	226, 376, 408
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	1 cut(s)	499
Sau3AI	GATC	7 cut(s)	61, 79, 147, 193, 517, 574, 584
Sau96I	GGNCC	2 cut(s)	19, 186
SchI	GAGTC	1 cut(s)	314
SduI	GDGCHC	3 cut(s)	301, 352, 514
SetI	ASST	6 cut(s)	75, 117, 163, 456, 463, 626
SfaNI	GCATC	2 cut(s)	241, 436
Sfr274I	CTCGAG	1 cut(s)	300
SfuI	TTCGAA	3 cut(s)	119, 539, 580
SinI	GGWCC	1 cut(s)	19
SlaI	CTCGAG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
SphI	GCATGC	1 cut(s)	613
Sse9I	AATT	4 cut(s)	41, 535, 595, 614
SspMI	CTAG	5 cut(s)	255, 294, 345, 363, 455
StyI	CCWWGG	2 cut(s)	441, 528
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	7 cut(s)	82, 119, 301, 352, 488, 539, 580
TasI	AATT	4 cut(s)	41, 535, 595, 614
TatI	WGTACW	1 cut(s)	407
TfiI	GAWTC	3 cut(s)	290, 341, 479
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TseI	GCWGC	1 cut(s)	498
TspDTI	ATGAA	1 cut(s)	255
VneI	GTGCAC	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	19
VspI	ATTAAT	1 cut(s)	570
XapI	RAATTY	1 cut(s)	535
XceI	RCATGY	1 cut(s)	613
XhoI	CTCGAG	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	5 cut(s)	255, 294, 345, 363, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.