Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

16078390 .. 16079364

Gene Structure 975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGACTATGCGATCATCTTTACCTTCTTCCTCTTCCGCTTATTCACTCGCTTCAACAAGTTTGAGCAACAGACTTGAGACCATCTTCAAGAAAGCTTCAGAGCTTTGCACTCTCTGTGATATTGAAGCCTGCGTCATCTATTACGGACCAGACGGAGAACTCAAGACATGGCCTCCGGAGCGAGAGAAAGTGAGAGACATTGCTCTTAGGTATAGTCAATTAAACGAAGCATTGAGACGCAAGAAAAGCGTTAATCTTCATGGGTTCCTGAACAAGAAGAAGAAGAACAAGGGTTTGAAGAATACGGACAAGAAGAGGAAGACGAGTCTTAAGAAGGTGAATGTTTTAAAGTATCCACTCGCTGATCATTACCCTCCCGACCAAGTTTCTCCACTGATTCAGTCCTTGGAACTCCATGTCTCTAAATTCCACGAAAGGCTTGAATTTCTTGAGTCGCGGAAACAGAATGAGACACAACCGGATCACCACAGTTTAGCATCATCCTCTCTGAATCATCAGACCCAATCTTTGAACCCTAGCCAGTTCTCGCTGTTTATGTATAATCATGGAGACAATACTCTGTCTCAGATCCCAGTCTCTGCATCAAATTTCAATCAGGATTATTTCTCAGCGTTACTTGAACAATCTGAGTTGAAGAATCAGTTAATGAAGCAGGAGATTTGTGGTAATGATCAGAATCAGAACATGTGGATGGGTAACATCACCAACAACAATTTTCAACTTCCTTGCGTCTCAGTACAAGAATCTGTGAACAACTTTGGGTTGATGCACAAGGAGTTTTATGGTTGTGATCATAACATGTCTGTGGGTAACATCAATAGCAACAGCTGTGAACATCCTTGCGTCTCAAGCACACAACATTACTCGGCGGTAGAAGAATCTGTGAATAACCCCTGGTTGAATCAGTTGATGCAGAATGAACTTTATGGTTACGGTTATGCAGACTTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

324

Amino Acids

37.01

Weight (kDa)

7.17

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	18 - 57	1e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	457
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	3 cut(s)	36, 457, 890
AclWI	GGATC	2 cut(s)	489, 583
AcsI	RAATTY	3 cut(s)	425, 443, 607
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	1 cut(s)	759
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	2 cut(s)	705, 819
AjnI	CCWGG	1 cut(s)	914
AluBI	AGCT	3 cut(s)	95, 103, 849
AluI	AGCT	3 cut(s)	95, 103, 849
AlwI	GGATC	2 cut(s)	489, 583
AlwNI	CAGNNNCTG	1 cut(s)	599
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	1 cut(s)	170
ApoI	RAATTY	3 cut(s)	425, 443, 607
ArsI	GACNNNNNNTTYG	2 cut(s)	511, 543
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	3 cut(s)	349, 476, 715
AvaII	GGWCC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	326
BccI	CCATC	2 cut(s)	89, 706
BciT130I	CCWGG	1 cut(s)	916
BciVI	GTATCC	1 cut(s)	363
BclI	TGATCA	3 cut(s)	364, 691, 811
BfaI	CTAG	1 cut(s)	537
BfrI	CTTAAG	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	916
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	916
BmrI	ACTGGG	1 cut(s)	587
BmsI	GCATC	4 cut(s)	506, 611, 777, 921
BmuI	ACTGGG	1 cut(s)	587
BpiI	GAAGAC	1 cut(s)	326
BpuEI	CTTGAG	4 cut(s)	95, 146, 470, 853
BsaBI	GATNNNNATC	1 cut(s)	696
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	405, 914
BsaWI	WCCGGW	2 cut(s)	175, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bse1I	ACTGG	2 cut(s)	541, 593
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	696
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	916
BseDI	CCNNGG	2 cut(s)	405, 914
BseGI	GGATG	3 cut(s)	500, 717, 856
BseJI	GATNNNNATC	1 cut(s)	696
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	4 cut(s)	599, 639, 642, 768
BseNI	ACTGG	2 cut(s)	541, 593
Bsh1236I	CGCG	1 cut(s)	457
BshFI	GGCC	1 cut(s)	172
BsiSI	CCGG	2 cut(s)	176, 479
BsmBI	CGTCTC	3 cut(s)	229, 757, 871
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	71
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	6 cut(s)	11, 364, 481, 588, 691, 811
BspACI	CCGC	3 cut(s)	36, 457, 890
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	4 cut(s)	598, 640, 641, 767
BspEI	TCCGGA	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	457
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	2 cut(s)	489, 583
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	541, 593
BssECI	CCNNGG	2 cut(s)	405, 914
BssMI	GATC	6 cut(s)	11, 364, 481, 588, 691, 811
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	916
Bst4CI	ACNGT	2 cut(s)	491, 956
Bst6I	CTCTTC	2 cut(s)	37, 308
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	5 cut(s)	206, 585, 628, 648, 754
BstF5I	GGATG	3 cut(s)	500, 717, 856
BstFNI	CGCG	1 cut(s)	457
BstKTI	GATC	6 cut(s)	14, 367, 484, 591, 694, 814
BstMBI	GATC	6 cut(s)	11, 364, 481, 588, 691, 811
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 246, 870
BstNI	CCWGG	1 cut(s)	916
BstNSI	RCATGY	2 cut(s)	709, 823
BstSCI	CCNGG	1 cut(s)	914
BstUI	CGCG	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	588
BsuI	GTATCC	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	172
BtsCI	GGATG	3 cut(s)	500, 717, 856
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr13I	GGNCC	1 cut(s)	146
CseI	GACGC	4 cut(s)	121, 246, 739, 853
Csp6I	GTAC	1 cut(s)	758
CviAII	CATG	6 cut(s)	168, 260, 416, 566, 706, 820
CviJI	RGCY	7 cut(s)	95, 103, 128, 172, 439, 540, 849
CviKI_1	RGCY	7 cut(s)	95, 103, 128, 172, 439, 540, 849
CviQI	GTAC	1 cut(s)	758
DdeI	CTNAG	5 cut(s)	206, 585, 628, 648, 754
DpnI	GATC	6 cut(s)	13, 366, 483, 590, 693, 813
DpnII	GATC	6 cut(s)	11, 364, 481, 588, 691, 811
DraI	TTTAAA	1 cut(s)	348
Eam1104I	CTCTTC	2 cut(s)	37, 308
EarI	CTCTTC	2 cut(s)	37, 308
Eco130I	CCWWGG	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	914
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
Esp3I	CGTCTC	3 cut(s)	229, 757, 871
FaeI	CATG	6 cut(s)	171, 263, 419, 569, 709, 823
FatI	CATG	6 cut(s)	167, 259, 415, 565, 705, 819
FbaI	TGATCA	3 cut(s)	364, 691, 811
FokI	GGATG	3 cut(s)	487, 724, 843
FspBI	CTAG	1 cut(s)	537
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	2 cut(s)	176, 479
HgaI	GACGC	4 cut(s)	121, 246, 739, 853
Hin1II	CATG	6 cut(s)	171, 263, 419, 569, 709, 823
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	9 cut(s)	325, 397, 452, 511, 658, 697, 764, 899, 922
HpaII	CCGG	2 cut(s)	176, 479
HphI	GGTGA	3 cut(s)	349, 476, 715
Hpy166II	GTNNAC	2 cut(s)	772, 854
Hpy188I	TCNGA	7 cut(s)	100, 510, 519, 588, 649, 696, 702
Hpy188III	TCNNGA	7 cut(s)	88, 163, 176, 268, 377, 449, 617
Hpy8I	GTNNAC	2 cut(s)	772, 854
HpyAV	CCTTC	2 cut(s)	33, 328
HpyCH4III	ACNGT	2 cut(s)	491, 956
HpyCH4V	TGCA	5 cut(s)	108, 602, 790, 934, 962
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 246, 870
HpyF3I	CTNAG	5 cut(s)	206, 585, 628, 648, 754
Hsp92II	CATG	6 cut(s)	171, 263, 419, 569, 709, 823
Kpn2I	TCCGGA	1 cut(s)	175
Ksp22I	TGATCA	3 cut(s)	364, 691, 811
Kzo9I	GATC	6 cut(s)	11, 364, 481, 588, 691, 811
LmnI	GCTCC	1 cut(s)	178
LweI	GCATC	4 cut(s)	506, 611, 777, 921
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	4 cut(s)	633, 716, 830, 950
MalI	GATC	6 cut(s)	13, 366, 483, 590, 693, 813
MboI	GATC	6 cut(s)	11, 364, 481, 588, 691, 811
MflI	RGATCY	1 cut(s)	588
MluCI	AATT	5 cut(s)	218, 425, 443, 607, 733
MlyI	GAGTC	2 cut(s)	334, 461
MnlI	CCTC	5 cut(s)	40, 183, 309, 384, 514
MroI	TCCGGA	1 cut(s)	175
MseI	TTAA	6 cut(s)	221, 252, 330, 347, 665, 973
MslI	CAYNNNNRTG	2 cut(s)	710, 824
MspA1I	CMGCKG	1 cut(s)	849
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	2 cut(s)	176, 479
MspR9I	CCNGG	1 cut(s)	916
MvaI	CCWGG	1 cut(s)	916
MvnI	CGCG	1 cut(s)	457
MwoI	GCNNNNNNNGC	3 cut(s)	178, 246, 870
NdeII	GATC	6 cut(s)	11, 364, 481, 588, 691, 811
NlaIII	CATG	6 cut(s)	171, 263, 419, 569, 709, 823
NlaIV	GGNNCC	1 cut(s)	266
NmeAIII	GCCGAG	1 cut(s)	866
NspI	RCATGY	2 cut(s)	709, 823
PciI	ACATGT	2 cut(s)	705, 819
PfeI	GAWTC	7 cut(s)	397, 511, 658, 697, 764, 899, 922
PleI	GAGTC	2 cut(s)	333, 460
PpsI	GAGTC	2 cut(s)	333, 460
PscI	ACATGT	2 cut(s)	705, 819
Psp6I	CCWGG	1 cut(s)	914
PspGI	CCWGG	1 cut(s)	914
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	1 cut(s)	588
PvuII	CAGCTG	1 cut(s)	849
RsaI	GTAC	1 cut(s)	759
RsaNI	GTAC	1 cut(s)	758
RseI	CAYNNNNRTG	2 cut(s)	710, 824
SaqAI	TTAA	6 cut(s)	221, 252, 330, 347, 665, 973
Sau3AI	GATC	6 cut(s)	11, 364, 481, 588, 691, 811
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	2 cut(s)	334, 461
ScrFI	CCNGG	1 cut(s)	916
SetI	ASST	6 cut(s)	25, 97, 105, 212, 339, 851
SfaNI	GCATC	4 cut(s)	506, 611, 777, 921
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	2 cut(s)	710, 824
SmlI	CTYRAG	5 cut(s)	74, 161, 329, 449, 868
SmoI	CTYRAG	5 cut(s)	74, 161, 329, 449, 868
Sse9I	AATT	5 cut(s)	218, 425, 443, 607, 733
SsiI	CCGC	3 cut(s)	36, 457, 890
SspMI	CTAG	1 cut(s)	537
StyD4I	CCNGG	1 cut(s)	914
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	491, 956
TasI	AATT	5 cut(s)	218, 425, 443, 607, 733
TatI	WGTACW	1 cut(s)	757
TfiI	GAWTC	7 cut(s)	397, 511, 658, 697, 764, 899, 922
Tru1I	TTAA	6 cut(s)	221, 252, 330, 347, 665, 973
Tru9I	TTAA	6 cut(s)	221, 252, 330, 347, 665, 973
TscAI	CASTG	1 cut(s)	399
TspDTI	ATGAA	3 cut(s)	248, 683, 954
TspGWI	ACGGA	3 cut(s)	159, 168, 320
TspRI	CASTG	1 cut(s)	399
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	3 cut(s)	425, 443, 607
XceI	RCATGY	2 cut(s)	709, 823
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.